Wall clock time and date at job start Sun Mar 7 2021 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86306 * 109.46725 * 2 1 4 4 H 1.48505 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47092 * 299.99500 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99860 * 3 2 1 7 7 C 1.50701 * 109.46773 * 119.99671 * 2 1 3 8 8 C 1.34494 * 125.49228 * 210.02544 * 7 2 1 9 9 C 1.46745 * 106.36674 * 179.97438 * 8 7 2 10 10 C 1.47268 * 126.97012 * 179.97438 * 9 8 7 11 11 O 1.21632 * 119.99822 * 230.07344 * 10 9 8 12 12 N 1.34772 * 119.99908 * 50.07364 * 10 9 8 13 13 C 1.46402 * 118.75467 * 175.64967 * 12 10 9 14 14 C 1.54444 * 108.77923 * 106.58949 * 13 12 10 15 15 Si 1.85195 * 107.11647 * 51.55414 * 14 13 12 16 16 C 1.87452 * 111.52197 * 191.58365 * 15 14 13 17 17 C 1.55693 * 100.84220 * 238.39908 * 16 15 14 18 18 C 1.53777 * 111.39886 * 27.99458 * 17 16 15 19 19 C 1.56399 * 109.77240 * 312.17459 * 18 17 16 20 20 C 1.85200 * 110.13805 * 315.95924 * 15 14 13 21 21 C 1.46387 * 118.75831 * 355.62096 * 12 10 9 22 22 C 1.36333 * 106.06010 * 0.25239 * 9 8 7 23 23 C 1.50999 * 126.79131 * 179.80343 * 22 9 8 24 24 C 1.53394 * 108.25056 * 164.25502 * 23 22 9 25 25 C 1.53157 * 109.03757 * 48.48337 * 24 23 22 26 26 C 1.53379 * 109.31411 * 290.19699 * 25 24 23 27 27 N 1.35213 * 108.66352 * 359.59707 * 22 9 8 28 28 H 0.96698 * 114.00471 * 299.99636 * 1 2 3 29 29 H 1.08995 * 109.47178 * 240.00237 * 2 1 3 30 30 H 1.08008 * 126.81638 * 359.97438 * 8 7 2 31 31 H 1.09002 * 109.58664 * 346.79567 * 13 12 10 32 32 H 1.09007 * 109.58105 * 226.37387 * 13 12 10 33 33 H 1.09004 * 109.92225 * 292.15685 * 14 13 12 34 34 H 1.08996 * 109.92986 * 170.96191 * 14 13 12 35 35 H 1.08990 * 111.14684 * 356.29274 * 16 15 14 36 36 H 1.08999 * 111.14521 * 120.50548 * 16 15 14 37 37 H 1.09001 * 109.10397 * 267.48140 * 17 16 15 38 38 H 1.09007 * 109.09788 * 148.50814 * 17 16 15 39 39 H 1.08995 * 109.41989 * 192.07773 * 18 17 16 40 40 H 1.09000 * 109.42021 * 72.26395 * 18 17 16 41 41 H 1.09001 * 111.49396 * 281.94313 * 19 18 17 42 42 H 1.08998 * 111.49020 * 156.82882 * 19 18 17 43 43 H 1.09003 * 109.92376 * 163.44221 * 20 15 14 44 44 H 1.09002 * 109.92276 * 284.63913 * 20 15 14 45 45 H 1.09001 * 109.58848 * 13.19744 * 21 12 10 46 46 H 1.09000 * 109.58468 * 133.62132 * 21 12 10 47 47 H 1.08999 * 109.70718 * 283.94652 * 23 22 9 48 48 H 1.09007 * 109.70905 * 44.56586 * 23 22 9 49 49 H 1.09000 * 109.54232 * 168.34903 * 24 23 22 50 50 H 1.09004 * 109.54029 * 288.52825 * 24 23 22 51 51 H 1.08994 * 109.46447 * 50.44232 * 25 24 23 52 52 H 1.08999 * 109.46116 * 170.40818 * 25 24 23 53 53 H 1.08998 * 110.12640 * 291.23741 * 26 25 24 54 54 H 1.09000 * 109.09161 * 170.84663 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 1 3.5349 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5548 2.4566 1.2125 7 6 1.9312 -0.7104 1.2305 8 6 3.0854 -0.4459 1.8684 9 6 3.1547 -1.3767 3.0008 10 6 4.2327 -1.4786 3.9989 11 8 4.7260 -2.5610 4.2529 12 7 4.6727 -0.3725 4.6308 13 6 5.6770 -0.5168 5.6862 14 6 7.0360 -0.0144 5.1513 15 14 6.7541 1.6758 4.4488 16 6 8.2317 2.2631 3.4561 17 6 8.5926 3.5735 4.2155 18 6 8.1736 3.4991 5.6932 19 6 6.7029 2.9781 5.8006 20 6 5.2040 1.6947 3.4354 21 6 4.1287 0.9278 4.2355 22 6 2.0216 -2.1324 2.9377 23 6 1.6208 -3.2416 3.8806 24 6 0.1289 -3.5324 3.6736 25 6 -0.1481 -3.6789 2.1744 26 6 -0.0051 -2.3107 1.4960 27 7 1.2883 -1.7250 1.8773 28 1 -0.3934 0.4416 0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 3.8161 0.3029 1.6005 31 1 5.7611 -1.5659 5.9696 32 1 5.3838 0.0757 6.5529 33 1 7.3993 -0.6846 4.3723 34 1 7.7593 0.0375 5.9651 35 1 9.0487 1.5433 3.5039 36 1 7.9537 2.4714 2.4229 37 1 8.0825 4.4123 3.7419 38 1 9.6692 3.7344 4.1575 39 1 8.2402 4.4914 6.1392 40 1 8.8388 2.8185 6.2247 41 1 5.9831 3.7639 5.5712 42 1 6.5069 2.5335 6.7763 43 1 4.8812 2.7225 3.2695 44 1 5.3789 1.2003 2.4799 45 1 3.2461 0.7808 3.6130 46 1 3.8601 1.4973 5.1253 47 1 2.2034 -4.1369 3.6637 48 1 1.7950 -2.9296 4.9104 49 1 -0.1367 -4.4573 4.1856 50 1 -0.4622 -2.7098 4.0763 51 1 0.5633 -4.3814 1.7405 52 1 -1.1619 -4.0514 2.0272 53 1 -0.8123 -1.6495 1.8113 54 1 -0.0411 -2.4434 0.4147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_16915396.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:53:49 Heat of formation + Delta-G solvation = -58.006172 kcal Electronic energy + Delta-G solvation = -32473.323945 eV Core-core repulsion = 28533.682166 eV Total energy + Delta-G solvation = -3939.641778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 362.194 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.84238 -40.66592 -37.94803 -37.23223 -36.80469 -36.13912 -33.71010 -32.45263 -31.15989 -30.54836 -29.68537 -29.19773 -26.59362 -25.05100 -24.65941 -24.52323 -23.97235 -22.53608 -21.71202 -20.99943 -20.33900 -19.44375 -18.64178 -17.67596 -17.00239 -16.83679 -16.53286 -16.26282 -15.97784 -15.81444 -15.65480 -15.49229 -15.33994 -15.10844 -14.79032 -14.75577 -14.62688 -14.58973 -14.22611 -14.12001 -13.97108 -13.84523 -13.46143 -13.31701 -13.15237 -12.69124 -12.59280 -12.45179 -12.36529 -12.26836 -12.11151 -12.05781 -12.03054 -11.99167 -11.92062 -11.76238 -11.73929 -11.35026 -10.99230 -10.66478 -10.44759 -10.39676 -10.23993 -9.67110 -9.45786 -9.03575 0.85764 1.00343 1.36164 1.54002 1.57425 1.75738 1.80412 1.85560 1.92943 1.99504 2.14028 2.25273 2.66669 3.36463 3.51583 3.55143 3.69434 3.78143 3.82041 3.91831 4.13565 4.14038 4.15661 4.25275 4.33015 4.34142 4.35028 4.40815 4.42875 4.47895 4.55349 4.61294 4.64654 4.68485 4.70911 4.73620 4.78114 4.80145 4.86812 4.90651 4.95622 4.97420 5.03529 5.12098 5.13489 5.14381 5.21451 5.22923 5.33826 5.36263 5.39903 5.52973 5.58188 5.65897 5.73077 6.04950 6.25318 6.39745 6.59394 7.22622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.052 4.052 3 Si 0.992 3.008 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.245 1.245 7 C -0.007 4.007 8 C -0.182 4.182 9 C -0.247 4.247 10 C 0.586 3.414 11 O -0.589 6.589 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.440 4.440 15 Si 1.049 2.951 16 C -0.422 4.422 17 C -0.122 4.122 18 C -0.127 4.127 19 C -0.401 4.401 20 C -0.439 4.439 21 C 0.103 3.897 22 C 0.091 3.909 23 C -0.057 4.057 24 C -0.120 4.120 25 C -0.136 4.136 26 C 0.105 3.895 27 N -0.424 5.424 28 H 0.389 0.611 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.062 0.938 52 H 0.109 0.891 53 H 0.105 0.895 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 4.606 0.046 7.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.162 4.162 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.168 1.168 7 C -0.117 4.117 8 C -0.206 4.206 9 C -0.257 4.257 10 C 0.376 3.624 11 O -0.471 6.471 12 N -0.336 5.336 13 C -0.005 4.005 14 C -0.525 4.525 15 Si 1.240 2.760 16 C -0.507 4.507 17 C -0.159 4.159 18 C -0.164 4.164 19 C -0.488 4.488 20 C -0.525 4.525 21 C -0.018 4.018 22 C -0.026 4.026 23 C -0.095 4.095 24 C -0.157 4.157 25 C -0.174 4.174 26 C -0.014 4.014 27 N -0.100 5.100 28 H 0.238 0.762 29 H 0.143 0.857 30 H 0.176 0.824 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.081 0.919 52 H 0.128 0.872 53 H 0.123 0.877 54 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.130 4.429 -0.488 6.795 hybrid contribution 0.586 -0.580 0.391 0.913 sum -4.544 3.848 -0.097 5.955 Atomic orbital electron populations 1.86478 1.16997 1.81609 1.50310 1.24822 0.84996 1.10750 0.95660 0.85117 0.80294 0.72611 0.80762 1.17434 1.19239 1.16767 1.20986 0.95677 0.95568 0.99428 1.21935 0.98732 1.03029 0.96905 1.19862 0.98216 1.05219 1.02364 1.17910 0.81160 0.83505 0.79804 1.90737 1.59858 1.29551 1.66918 1.48062 1.41464 1.07332 1.36735 1.21364 0.86899 1.02710 0.89539 1.26862 0.99346 1.19166 1.07104 0.78806 0.65715 0.64622 0.66877 1.26651 1.15220 1.02293 1.06535 1.21882 1.01209 0.97729 0.95107 1.22066 0.96437 1.01896 0.96022 1.26662 0.97842 1.12013 1.12275 1.26786 1.13871 1.04315 1.07564 1.21819 0.97396 0.81831 1.00799 1.20357 0.92225 0.98068 0.91940 1.20430 0.97721 0.94512 0.96792 1.21662 0.93865 1.03658 0.96542 1.21985 1.04514 0.95546 0.95339 1.22364 0.82043 0.95235 1.01769 1.43970 1.18034 1.26888 1.21102 0.76183 0.85702 0.82399 0.91401 0.88122 0.92244 0.88692 0.91283 0.90221 0.91508 0.92633 0.91596 0.91905 0.89265 0.89674 0.86972 0.90612 0.88305 0.88426 0.90716 0.90315 0.89429 0.90506 0.91895 0.87231 0.87735 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.49 10.68 -148.98 -1.59 0.90 16 2 C -0.05 0.17 2.99 71.24 0.21 0.39 16 3 Si 0.99 -3.72 26.55 68.60 1.82 -1.89 16 4 H -0.25 0.71 6.80 99.48 0.68 1.38 16 5 H -0.27 0.23 7.11 99.48 0.71 0.93 16 6 H -0.24 0.98 7.11 99.48 0.71 1.69 16 7 C -0.01 -0.01 6.15 40.99 0.25 0.25 16 8 C -0.18 -0.65 7.24 23.64 0.17 -0.48 16 9 C -0.25 -1.99 5.07 -19.12 -0.10 -2.08 16 10 C 0.59 6.66 7.32 86.62 0.63 7.29 16 11 O -0.59 -11.41 16.33 -4.13 -0.07 -11.47 16 12 N -0.60 -2.80 2.55 -820.76 -2.09 -4.89 16 13 C 0.12 0.38 5.90 86.89 0.51 0.90 16 14 C -0.44 -0.58 5.21 72.47 0.38 -0.20 16 15 Si 1.05 -3.73 10.74 68.60 0.74 -3.00 16 16 C -0.42 0.25 5.84 72.91 0.43 0.68 16 17 C -0.12 0.08 6.09 31.79 0.19 0.27 16 18 C -0.13 0.22 5.97 32.04 0.19 0.41 16 19 C -0.40 1.72 5.95 73.17 0.43 2.15 16 20 C -0.44 1.58 4.92 72.46 0.36 1.93 16 21 C 0.10 -0.15 5.39 86.88 0.47 0.32 16 22 C 0.09 0.52 6.57 41.69 0.27 0.79 16 23 C -0.06 -0.20 5.99 30.07 0.18 -0.02 16 24 C -0.12 0.36 5.97 30.78 0.18 0.54 16 25 C -0.14 0.62 5.94 30.77 0.18 0.80 16 26 C 0.11 -0.42 5.32 86.41 0.46 0.04 16 27 N -0.42 -0.62 3.11 -493.18 -1.53 -2.15 16 28 H 0.39 -4.03 8.63 -74.06 -0.64 -4.67 16 29 H 0.13 -0.51 7.96 -2.39 -0.02 -0.53 16 30 H 0.16 0.15 4.85 -2.91 -0.01 0.14 16 31 H 0.07 0.59 6.95 -2.39 -0.02 0.58 16 32 H 0.10 -0.24 8.08 -2.38 -0.02 -0.26 16 33 H 0.06 0.35 7.97 -2.39 -0.02 0.33 16 34 H 0.09 -0.07 7.97 -2.39 -0.02 -0.09 16 35 H 0.07 0.07 8.03 -2.39 -0.02 0.05 16 36 H 0.08 -0.08 8.03 -2.39 -0.02 -0.10 16 37 H 0.07 -0.12 8.14 -2.39 -0.02 -0.13 16 38 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 39 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.09 -0.51 8.04 -2.39 -0.02 -0.53 16 42 H 0.08 -0.43 8.04 -2.39 -0.02 -0.45 16 43 H 0.11 -0.85 7.97 -2.39 -0.02 -0.87 16 44 H 0.08 -0.14 6.67 -2.39 -0.02 -0.15 16 45 H 0.10 -0.06 4.67 -2.39 -0.01 -0.07 16 46 H 0.10 -0.57 8.08 -2.39 -0.02 -0.59 16 47 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 49 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 50 H 0.08 -0.32 8.12 -2.38 -0.02 -0.34 16 51 H 0.06 -0.10 8.11 -2.39 -0.02 -0.12 16 52 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 53 H 0.10 -0.80 7.94 -2.39 -0.02 -0.82 16 54 H 0.10 -0.37 7.70 -2.39 -0.02 -0.39 16 Total: 0.00 -18.04 403.76 3.66 -14.38 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: 0.97 Total: -5.85 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.41 Total: 13.98 kcal Atomic # 7 Polarization: -3.41 SS G_CDS: -3.63 Total: -7.04 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -1.66 Total: -10.57 kcal Atomic # 14 Polarization: -7.45 SS G_CDS: 2.56 Total: -4.89 kcal Total: -18.04 3.66 -14.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_16915396.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.629 kcal (2) G-P(sol) polarization free energy of solvation -18.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds