Wall clock time and date at job start Sun Mar 7 2021 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46806 * 2 1 4 4 H 1.48499 * 109.46961 * 299.99823 * 3 2 1 5 5 H 1.48504 * 109.47465 * 59.99994 * 3 2 1 6 6 H 1.48507 * 109.47284 * 179.97438 * 3 2 1 7 7 C 1.50693 * 109.47221 * 240.00010 * 2 1 3 8 8 C 1.38123 * 120.03116 * 104.97865 * 7 2 1 9 9 C 1.38281 * 120.05920 * 180.02562 * 8 7 2 10 10 C 1.38249 * 120.10916 * 359.74561 * 9 8 7 11 11 C 1.38161 * 120.05756 * 0.50906 * 10 9 8 12 12 C 1.38714 * 119.94312 * 359.48931 * 11 10 9 13 13 O 1.35892 * 120.05889 * 180.27992 * 12 11 10 14 14 C 1.42901 * 116.99992 * 359.97438 * 13 12 11 15 15 C 1.50701 * 109.47504 * 180.02562 * 14 13 12 16 16 O 1.21284 * 119.99875 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00095 * 180.02562 * 15 14 13 18 18 C 1.46391 * 118.75496 * 359.72634 * 17 15 14 19 19 C 1.53918 * 109.06551 * 253.45497 * 18 17 15 20 20 Si 1.85197 * 107.12362 * 308.57274 * 19 18 17 21 21 C 1.87452 * 111.52247 * 168.31865 * 20 19 18 22 22 C 1.55691 * 100.85031 * 114.79980 * 21 20 19 23 23 C 1.53778 * 111.39764 * 27.99327 * 22 21 20 24 24 C 1.56399 * 109.77387 * 312.17965 * 23 22 21 25 25 C 1.85196 * 110.14303 * 43.93557 * 20 19 18 26 26 C 1.46407 * 118.75253 * 179.97438 * 17 15 14 27 27 H 0.96698 * 113.99953 * 60.00484 * 1 2 3 28 28 H 1.09006 * 109.47138 * 119.99503 * 2 1 3 29 29 H 1.08006 * 119.96983 * 359.97438 * 8 7 2 30 30 H 1.08001 * 119.94768 * 179.97438 * 9 8 7 31 31 H 1.08004 * 119.97354 * 180.25064 * 10 9 8 32 32 H 1.08002 * 120.03267 * 179.77413 * 11 10 9 33 33 H 1.08998 * 109.47276 * 300.00247 * 14 13 12 34 34 H 1.08998 * 109.47191 * 60.00113 * 14 13 12 35 35 H 1.08997 * 109.58915 * 13.20445 * 18 17 15 36 36 H 1.09000 * 109.58591 * 133.62799 * 18 17 15 37 37 H 1.09009 * 110.00183 * 189.12622 * 19 18 17 38 38 H 1.08997 * 109.84102 * 67.93336 * 19 18 17 39 39 H 1.09004 * 111.14022 * 232.69318 * 21 20 19 40 40 H 1.08998 * 111.14448 * 356.90357 * 21 20 19 41 41 H 1.09005 * 109.09893 * 267.48594 * 22 21 20 42 42 H 1.08998 * 109.10522 * 148.50836 * 22 21 20 43 43 H 1.08998 * 109.42083 * 192.08651 * 23 22 21 44 44 H 1.09000 * 109.42374 * 72.26892 * 23 22 21 45 45 H 1.09005 * 111.49346 * 281.94259 * 24 23 22 46 46 H 1.09002 * 111.49565 * 156.82677 * 24 23 22 47 47 H 1.08992 * 109.92546 * 196.56067 * 25 20 19 48 48 H 1.09001 * 109.92388 * 75.36495 * 25 20 19 49 49 H 1.08996 * 109.58621 * 226.36728 * 26 17 15 50 50 H 1.09004 * 109.58375 * 346.79775 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4564 -1.2125 5 1 1.5549 2.4566 1.2125 6 1 3.5350 1.7566 0.0006 7 6 1.9314 -0.7104 -1.2304 8 6 2.4532 0.0157 -2.2832 9 6 2.9138 -0.6355 -3.4127 10 6 2.8582 -2.0148 -3.4892 11 6 2.3324 -2.7454 -2.4411 12 6 1.8697 -2.0945 -1.3069 13 8 1.3572 -2.8111 -0.2722 14 6 1.3248 -4.2320 -0.4204 15 6 0.7279 -4.8527 0.8164 16 8 0.3663 -4.1476 1.7346 17 7 0.5970 -6.1913 0.9026 18 6 1.0379 -7.0160 -0.2236 19 6 -0.1979 -7.5522 -0.9682 20 14 -1.3001 -8.3349 0.2975 21 6 -2.9945 -8.7166 -0.4078 22 6 -2.9962 -10.2720 -0.3408 23 6 -2.0968 -10.7856 0.7959 24 6 -0.7114 -10.0617 0.7426 25 6 -1.4161 -7.2548 1.7975 26 6 0.0140 -6.7651 2.1169 27 1 -0.3933 0.4416 -0.7651 28 1 1.7924 -0.5138 0.8901 29 1 2.5007 1.0931 -2.2244 30 1 3.3211 -0.0660 -4.2350 31 1 3.2223 -2.5214 -4.3708 32 1 2.2858 -3.8226 -2.5028 33 1 0.7174 -4.4933 -1.2869 34 1 2.3390 -4.6058 -0.5616 35 1 1.6381 -6.4132 -0.9051 36 1 1.6307 -7.8526 0.1462 37 1 0.1049 -8.2944 -1.7070 38 1 -0.7199 -6.7304 -1.4583 39 1 -3.7836 -8.2954 0.2152 40 1 -3.0798 -8.3673 -1.4367 41 1 -2.6351 -10.6703 -1.2891 42 1 -4.0154 -10.6208 -0.1746 43 1 -1.9489 -11.8597 0.6839 44 1 -2.5741 -10.5844 1.7549 45 1 -0.0725 -10.4788 -0.0358 46 1 -0.2153 -10.0768 1.7131 47 1 -1.8090 -7.8271 2.6378 48 1 -2.0637 -6.4024 1.5922 49 1 0.6219 -7.6054 2.4521 50 1 -0.0254 -6.0053 2.8975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_2989392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:54:02 Heat of formation + Delta-G solvation = -103.643953 kcal Electronic energy + Delta-G solvation = -29150.752635 eV Core-core repulsion = 25266.950811 eV Total energy + Delta-G solvation = -3883.801824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.167 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.72843 -40.83819 -38.61233 -37.51413 -37.32472 -36.14870 -33.03217 -32.61665 -31.30753 -30.67752 -29.68997 -28.89087 -26.66852 -24.99132 -24.31116 -23.97300 -23.02780 -22.56104 -21.04043 -20.20441 -19.61232 -18.18544 -18.11955 -17.51268 -17.23409 -16.97043 -16.48207 -16.04689 -15.98515 -15.81150 -15.72703 -15.52931 -15.08267 -14.93933 -14.78024 -14.57546 -14.28906 -14.20649 -14.07949 -13.76668 -13.46506 -13.45473 -13.33919 -13.00748 -12.68327 -12.53117 -12.45506 -12.32374 -12.23433 -12.12300 -12.07798 -11.94912 -11.83940 -11.62766 -11.36324 -10.98609 -10.45374 -10.39587 -10.34622 -10.23829 -9.97068 -9.77041 -9.21179 0.23242 0.41416 1.14379 1.39218 1.39920 1.46877 1.50348 1.75669 1.85007 1.88879 1.94522 2.44005 2.65345 2.70562 3.30376 3.55789 3.75250 3.83047 3.92773 4.00505 4.08619 4.10778 4.12857 4.14335 4.16242 4.28206 4.31276 4.36081 4.37586 4.43348 4.54163 4.62086 4.64141 4.66314 4.69848 4.71133 4.83463 4.98347 5.01818 5.11473 5.12639 5.20584 5.28939 5.30628 5.35665 5.36538 5.39244 5.52084 5.52302 5.52642 5.57893 5.75756 6.13816 6.37380 6.74521 7.02003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.081 4.081 3 Si 0.994 3.006 4 H -0.234 1.234 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.169 4.169 8 C -0.097 4.097 9 C -0.155 4.155 10 C -0.074 4.074 11 C -0.211 4.211 12 C 0.130 3.870 13 O -0.312 6.312 14 C 0.036 3.964 15 C 0.505 3.495 16 O -0.571 6.571 17 N -0.604 5.604 18 C 0.100 3.900 19 C -0.431 4.431 20 Si 1.055 2.945 21 C -0.427 4.427 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.404 4.404 25 C -0.446 4.446 26 C 0.116 3.884 27 H 0.384 0.616 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.058 0.942 49 H 0.106 0.894 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -5.320 -7.508 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.157 1.157 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.170 4.170 8 C -0.114 4.114 9 C -0.173 4.173 10 C -0.092 4.092 11 C -0.229 4.229 12 C 0.085 3.915 13 O -0.225 6.225 14 C -0.042 4.042 15 C 0.293 3.707 16 O -0.450 6.450 17 N -0.339 5.339 18 C -0.021 4.021 19 C -0.519 4.519 20 Si 1.245 2.755 21 C -0.511 4.511 22 C -0.160 4.160 23 C -0.166 4.166 24 C -0.490 4.490 25 C -0.530 4.530 26 C -0.006 4.006 27 H 0.232 0.768 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.076 0.924 49 H 0.124 0.876 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.104 -4.350 -6.247 8.648 hybrid contribution -0.886 -0.353 -0.020 0.954 sum 3.217 -4.704 -6.267 8.470 Atomic orbital electron populations 1.86566 1.17991 1.81984 1.49577 1.25035 0.84728 1.11460 0.97791 0.85131 0.79746 0.73283 0.80259 1.15696 1.20615 1.17674 1.19796 1.06786 0.91671 0.98757 1.21177 0.97066 1.00376 0.92829 1.21394 1.02070 0.95260 0.98597 1.21395 0.95446 0.94058 0.98270 1.21606 1.05457 1.01871 0.94014 1.19060 0.94018 0.91048 0.87391 1.86199 1.77980 1.18663 1.39622 1.22822 1.04284 0.79858 0.97237 1.20679 0.78505 0.83252 0.88253 1.90752 1.50587 1.62288 1.41359 1.48158 1.61639 1.04909 1.19151 1.21820 0.96932 0.96512 0.86830 1.26538 1.06521 1.08050 1.10776 0.78726 0.66160 0.65556 0.65022 1.26718 1.18635 0.99002 1.06776 1.21883 0.99706 0.95050 0.99355 1.22076 0.95221 1.00781 0.98523 1.26709 0.98680 1.17498 1.06130 1.26954 0.98125 1.09917 1.17972 1.21393 0.93949 0.99027 0.86196 0.76763 0.88832 0.84179 0.83281 0.82678 0.82654 0.86336 0.85845 0.87511 0.87244 0.86335 0.90094 0.91638 0.90091 0.91368 0.92943 0.91713 0.92172 0.88999 0.89769 0.88959 0.92350 0.87607 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.23 12.88 -148.98 -1.92 -7.15 16 2 C -0.08 -0.58 2.38 71.23 0.17 -0.41 16 3 Si 0.99 2.62 25.49 68.60 1.75 4.37 16 4 H -0.23 0.14 6.73 99.48 0.67 0.81 16 5 H -0.28 -1.92 7.11 99.48 0.71 -1.22 16 6 H -0.25 -0.73 7.11 99.48 0.71 -0.02 16 7 C -0.17 -0.93 5.27 -19.77 -0.10 -1.03 16 8 C -0.10 -0.12 8.66 22.25 0.19 0.08 16 9 C -0.16 0.28 10.04 22.28 0.22 0.50 16 10 C -0.07 0.23 10.04 22.25 0.22 0.45 16 11 C -0.21 0.24 9.04 22.37 0.20 0.45 16 12 C 0.13 0.72 6.66 22.51 0.15 0.87 16 13 O -0.31 -2.91 9.00 -73.30 -0.66 -3.57 16 14 C 0.04 0.02 3.52 71.24 0.25 0.27 16 15 C 0.51 3.37 7.71 87.66 0.68 4.05 16 16 O -0.57 -10.62 15.76 15.99 0.25 -10.37 16 17 N -0.60 0.49 2.56 -817.57 -2.09 -1.60 16 18 C 0.10 -0.95 5.75 86.71 0.50 -0.45 16 19 C -0.43 4.24 5.19 72.29 0.38 4.62 16 20 Si 1.06 -7.17 10.74 68.60 0.74 -6.43 16 21 C -0.43 1.04 5.84 72.91 0.43 1.46 16 22 C -0.12 0.24 6.10 31.79 0.19 0.43 16 23 C -0.13 0.38 5.97 32.04 0.19 0.57 16 24 C -0.40 2.67 5.95 73.17 0.44 3.11 16 25 C -0.45 0.39 5.21 72.49 0.38 0.77 16 26 C 0.12 0.06 5.93 86.91 0.52 0.57 16 27 H 0.38 0.37 8.70 -74.06 -0.64 -0.27 16 28 H 0.09 1.00 7.83 -2.38 -0.02 0.98 16 29 H 0.14 -0.28 4.89 -2.91 -0.01 -0.29 16 30 H 0.15 -0.97 8.06 -2.91 -0.02 -0.99 16 31 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 32 H 0.16 -1.19 6.30 -2.91 -0.02 -1.21 16 33 H 0.12 -0.63 7.48 -2.39 -0.02 -0.65 16 34 H 0.12 -0.81 7.01 -2.39 -0.02 -0.82 16 35 H 0.11 -1.44 5.75 -2.39 -0.01 -1.46 16 36 H 0.11 -1.49 8.08 -2.39 -0.02 -1.51 16 37 H 0.12 -1.61 7.97 -2.38 -0.02 -1.63 16 38 H 0.08 -0.69 7.97 -2.39 -0.02 -0.71 16 39 H 0.06 -0.01 8.03 -2.38 -0.02 -0.03 16 40 H 0.08 -0.25 8.03 -2.39 -0.02 -0.27 16 41 H 0.07 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.09 -0.78 8.04 -2.38 -0.02 -0.80 16 46 H 0.08 -0.60 8.04 -2.39 -0.02 -0.62 16 47 H 0.09 -0.18 7.97 -2.39 -0.02 -0.20 16 48 H 0.06 0.23 7.97 -2.39 -0.02 0.21 16 49 H 0.11 -0.57 8.08 -2.39 -0.02 -0.59 16 50 H 0.06 0.48 6.90 -2.39 -0.02 0.46 16 Total: 0.00 -25.37 390.37 4.07 -21.29 By element: Atomic # 1 Polarization: -13.86 SS G_CDS: 1.01 Total: -12.85 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 5.00 Total: 16.31 kcal Atomic # 7 Polarization: 0.49 SS G_CDS: -2.09 Total: -1.60 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -2.33 Total: -21.09 kcal Atomic # 14 Polarization: -4.55 SS G_CDS: 2.49 Total: -2.06 kcal Total: -25.37 4.07 -21.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_2989392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.350 kcal (2) G-P(sol) polarization free energy of solvation -25.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds