Wall clock time and date at job start Sun Mar 7 2021 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.47113 * 2 1 4 4 H 1.48502 * 109.46889 * 300.00295 * 3 2 1 5 5 H 1.48496 * 109.47105 * 59.99958 * 3 2 1 6 6 H 1.48496 * 109.47327 * 180.02562 * 3 2 1 7 7 C 1.50697 * 109.47561 * 119.99884 * 2 1 3 8 8 C 1.38247 * 119.94588 * 65.01780 * 7 2 1 9 9 C 1.38166 * 120.05881 * 179.72316 * 8 7 2 10 10 N 1.48001 * 120.03005 * 180.25798 * 9 8 7 11 11 O 1.21805 * 119.99609 * 0.23515 * 10 9 8 12 12 O 1.21795 * 120.00179 * 180.23198 * 10 9 8 13 13 C 1.38714 * 119.93822 * 0.49398 * 9 8 7 14 14 O 1.35903 * 120.04853 * 179.78901 * 13 9 8 15 15 C 1.42906 * 116.99522 * 179.72437 * 14 13 9 16 16 C 1.50706 * 109.46702 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00072 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99762 * 179.97438 * 16 15 14 19 19 C 1.46403 * 118.75163 * 359.73648 * 18 16 15 20 20 C 1.53915 * 109.06374 * 253.44369 * 19 18 16 21 21 Si 1.85195 * 107.12498 * 308.57566 * 20 19 18 22 22 C 1.87456 * 111.52308 * 168.31424 * 21 20 19 23 23 C 1.55682 * 100.84923 * 114.79709 * 22 21 20 24 24 C 1.53786 * 111.39582 * 27.99620 * 23 22 21 25 25 C 1.56393 * 109.77380 * 312.17481 * 24 23 22 26 26 C 1.85191 * 110.14385 * 43.93713 * 21 20 19 27 27 C 1.46393 * 118.75699 * 179.97438 * 18 16 15 28 28 C 1.38744 * 119.89149 * 359.50934 * 13 9 8 29 29 C 1.38121 * 119.94701 * 0.25890 * 28 13 9 30 30 H 0.96697 * 114.00183 * 59.99889 * 1 2 3 31 31 H 1.08998 * 109.47150 * 240.00043 * 2 1 3 32 32 H 1.08006 * 119.96983 * 359.97438 * 8 7 2 33 33 H 1.09000 * 109.46890 * 59.99975 * 15 14 13 34 34 H 1.09000 * 109.47141 * 299.99618 * 15 14 13 35 35 H 1.08990 * 109.59153 * 13.19587 * 19 18 16 36 36 H 1.09011 * 109.58426 * 133.62298 * 19 18 16 37 37 H 1.08998 * 110.00404 * 189.12326 * 20 19 18 38 38 H 1.09005 * 109.83739 * 67.93599 * 20 19 18 39 39 H 1.09001 * 111.14546 * 232.69814 * 22 21 20 40 40 H 1.09004 * 111.14563 * 356.90495 * 22 21 20 41 41 H 1.09000 * 109.10510 * 267.49000 * 23 22 21 42 42 H 1.09003 * 109.10794 * 148.50983 * 23 22 21 43 43 H 1.08995 * 109.41950 * 192.07706 * 24 23 22 44 44 H 1.08996 * 109.41623 * 72.26989 * 24 23 22 45 45 H 1.08996 * 111.49368 * 281.94464 * 25 24 23 46 46 H 1.09003 * 111.49053 * 156.82640 * 25 24 23 47 47 H 1.08997 * 109.92808 * 196.56355 * 26 21 20 48 48 H 1.09003 * 109.92632 * 75.36143 * 26 21 20 49 49 H 1.08995 * 109.59532 * 226.37714 * 27 18 16 50 50 H 1.09002 * 109.58582 * 346.80561 * 27 18 16 51 51 H 1.08002 * 120.02699 * 180.27111 * 28 13 9 52 52 H 1.08001 * 119.97900 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4565 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5349 1.7566 -0.0006 7 6 1.9314 -0.7104 1.2304 8 6 1.6845 -2.0603 1.3971 9 6 2.1490 -2.7152 2.5215 10 7 1.8893 -4.1617 2.6965 11 8 1.2694 -4.7762 1.8469 12 8 2.2953 -4.7375 3.6900 13 6 2.8548 -2.0146 3.4886 14 8 3.3090 -2.6556 4.5976 15 6 4.0333 -1.8725 5.5485 16 6 4.4534 -2.7459 6.7026 17 8 4.1609 -3.9228 6.7102 18 7 5.1542 -2.2190 7.7262 19 6 5.4975 -0.7963 7.6860 20 6 6.9988 -0.6499 7.3798 21 14 7.9080 -1.7255 8.5823 22 6 9.7104 -1.9195 8.1051 23 6 10.4083 -1.2061 9.2999 24 6 9.5562 -1.2878 10.5775 25 6 8.0790 -0.8884 10.2546 26 6 7.0648 -3.3674 8.7335 27 6 5.5478 -3.0920 8.8334 28 6 3.1012 -0.6598 3.3191 29 6 2.6389 -0.0108 2.1909 30 1 -0.3933 0.4417 -0.7650 31 1 1.7923 -0.5138 -0.8900 32 1 1.1315 -2.6045 0.6456 33 1 3.3973 -1.0670 5.9155 34 1 4.9176 -1.4490 5.0722 35 1 4.9188 -0.3026 6.9055 36 1 5.2773 -0.3399 8.6512 37 1 7.3053 0.3886 7.5049 38 1 7.2021 -0.9780 6.3604 39 1 9.9931 -2.9711 8.0556 40 1 9.9250 -1.4121 7.1645 41 1 10.5695 -0.1586 9.0451 42 1 11.3731 -1.6790 9.4837 43 1 9.9603 -0.6070 11.3267 44 1 9.5800 -2.3065 10.9643 45 1 7.9662 0.1927 10.1734 46 1 7.3841 -1.3060 10.9832 47 1 7.4090 -3.8805 9.6314 48 1 7.2749 -3.9753 7.8534 49 1 5.3269 -2.6019 9.7816 50 1 5.0003 -4.0324 8.7697 51 1 3.6543 -0.1132 4.0685 52 1 2.8308 1.0437 2.0582 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_4549638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:06 Heat of formation + Delta-G solvation = -99.533068 kcal Electronic energy + Delta-G solvation = -35235.733440 eV Core-core repulsion = 30521.093442 eV Total energy + Delta-G solvation = -4714.639998 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 394.161 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.30110 -41.87117 -40.96528 -39.42405 -37.59036 -37.49222 -37.27066 -36.14570 -33.59875 -32.85899 -32.29143 -30.92910 -29.68831 -29.22445 -27.82928 -26.53669 -24.99081 -24.42997 -24.01913 -23.42146 -22.64928 -21.05100 -20.50637 -20.29129 -19.79808 -19.17337 -18.67534 -18.48581 -18.23940 -17.68068 -17.62053 -16.83319 -16.48070 -16.14562 -15.98644 -15.90799 -15.67564 -15.60030 -15.22043 -14.81651 -14.64027 -14.47164 -14.30983 -14.22812 -13.99403 -13.86496 -13.67609 -13.47353 -13.36179 -13.11589 -12.70539 -12.67903 -12.65515 -12.46113 -12.35642 -12.28948 -12.26899 -12.14614 -12.11963 -11.96789 -11.94170 -11.79426 -11.36407 -11.00823 -10.85001 -10.44480 -10.38749 -10.38176 -10.22371 -9.79505 -9.74551 -1.31827 -0.25097 0.14625 0.34127 1.14887 1.19892 1.40984 1.49869 1.58265 1.76257 1.86737 1.94714 1.95267 2.01062 2.18304 2.66008 3.07628 3.11285 3.32288 3.40365 3.59654 3.67118 3.78617 3.91799 3.96048 4.10525 4.12598 4.14464 4.16190 4.23652 4.30502 4.33784 4.37253 4.44128 4.50745 4.59741 4.63427 4.65908 4.69960 4.71154 4.82633 4.85925 5.04217 5.06820 5.11640 5.12774 5.18868 5.21095 5.31926 5.36542 5.41580 5.52801 5.53301 5.58533 5.74224 6.19635 6.43247 6.78731 7.03389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.091 4.091 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.250 1.250 6 H -0.241 1.241 7 C -0.114 4.114 8 C 0.001 3.999 9 C -0.104 4.104 10 N 0.035 4.965 11 O -0.193 6.193 12 O -0.179 6.179 13 C 0.192 3.808 14 O -0.290 6.290 15 C 0.021 3.979 16 C 0.502 3.498 17 O -0.567 6.567 18 N -0.604 5.604 19 C 0.097 3.903 20 C -0.427 4.427 21 Si 1.055 2.945 22 C -0.428 4.428 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.405 4.405 26 C -0.448 4.448 27 C 0.116 3.884 28 C -0.190 4.190 29 C -0.019 4.019 30 H 0.402 0.598 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.205 0.795 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 16.175 -0.454 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.199 4.199 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.174 1.174 6 H -0.164 1.164 7 C -0.115 4.115 8 C -0.018 4.018 9 C -0.189 4.189 10 N 0.545 4.455 11 O -0.403 6.403 12 O -0.391 6.391 13 C 0.142 3.858 14 O -0.201 6.201 15 C -0.056 4.056 16 C 0.290 3.710 17 O -0.444 6.444 18 N -0.338 5.338 19 C -0.023 4.023 20 C -0.516 4.516 21 Si 1.245 2.755 22 C -0.512 4.512 23 C -0.160 4.160 24 C -0.167 4.167 25 C -0.492 4.492 26 C -0.531 4.531 27 C -0.006 4.006 28 C -0.208 4.208 29 C -0.037 4.037 30 H 0.253 0.747 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.077 0.923 49 H 0.123 0.877 50 H 0.081 0.919 51 H 0.221 0.779 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.657 16.470 0.115 17.116 hybrid contribution -0.123 -1.765 -0.330 1.799 sum 4.535 14.705 -0.215 15.390 Atomic orbital electron populations 1.86462 1.17356 1.82522 1.51265 1.24985 0.85959 1.12096 0.96899 0.85237 0.80440 0.72776 0.81231 1.18373 1.17430 1.16419 1.19527 1.01643 0.91783 0.98563 1.20886 0.92680 0.94969 0.93266 1.20861 1.15802 0.79825 1.02403 1.43850 0.97939 1.04166 0.99517 1.94488 1.40022 1.67823 1.37955 1.94688 1.53933 1.70862 1.19599 1.18944 0.89844 0.92089 0.84937 1.86483 1.67360 1.37864 1.28349 1.23272 0.99872 0.94013 0.88411 1.20605 0.78418 0.87890 0.84124 1.90822 1.55928 1.18875 1.78817 1.48156 1.53872 1.11756 1.20034 1.21887 0.96278 0.77962 1.06177 1.26476 1.01783 1.12065 1.11264 0.78738 0.64518 0.64875 0.67359 1.26739 1.21558 1.02291 1.00640 1.21882 0.98983 1.00995 0.94144 1.22080 0.95526 1.01451 0.97638 1.26731 0.97564 1.07430 1.17438 1.26989 1.01885 1.19533 1.04735 1.21372 0.94953 0.95048 0.89185 1.21726 1.06519 0.90140 1.02436 1.21690 0.90238 1.01496 0.90243 0.74697 0.88431 0.82379 0.83930 0.84047 0.86654 0.87325 0.86032 0.89534 0.91857 0.89909 0.91248 0.93130 0.91812 0.92385 0.88883 0.89950 0.89300 0.92342 0.87668 0.91945 0.77859 0.80787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.40 12.81 -148.98 -1.91 0.49 16 2 C -0.09 0.63 2.79 71.24 0.20 0.83 16 3 Si 0.98 -9.50 25.13 68.60 1.72 -7.78 16 4 H -0.26 2.00 7.11 99.48 0.71 2.71 16 5 H -0.25 2.14 7.04 99.48 0.70 2.84 16 6 H -0.24 2.48 7.11 99.48 0.71 3.19 16 7 C -0.11 0.33 5.39 -19.85 -0.11 0.23 16 8 C 0.00 0.00 9.19 22.25 0.20 0.21 16 9 C -0.10 -0.91 6.87 36.48 0.25 -0.66 16 10 N 0.03 0.62 4.45 -46.24 -0.21 0.41 16 11 O -0.19 -3.66 18.45 18.88 0.35 -3.31 16 12 O -0.18 -4.13 17.24 25.61 0.44 -3.69 16 13 C 0.19 0.57 6.67 22.50 0.15 0.72 16 14 O -0.29 -1.99 7.68 -63.43 -0.49 -2.48 16 15 C 0.02 -0.09 3.52 71.24 0.25 0.16 16 16 C 0.50 1.97 7.71 87.66 0.68 2.65 16 17 O -0.57 -9.92 15.76 16.01 0.25 -9.67 16 18 N -0.60 2.05 2.56 -817.56 -2.09 -0.04 16 19 C 0.10 -1.28 5.75 86.71 0.50 -0.78 16 20 C -0.43 5.67 5.19 72.29 0.38 6.04 16 21 Si 1.06 -8.94 10.74 68.60 0.74 -8.20 16 22 C -0.43 1.58 5.84 72.91 0.43 2.01 16 23 C -0.12 0.34 6.10 31.78 0.19 0.54 16 24 C -0.13 0.47 5.97 32.04 0.19 0.66 16 25 C -0.41 3.12 5.95 73.16 0.43 3.56 16 26 C -0.45 0.86 5.21 72.50 0.38 1.23 16 27 C 0.12 -0.09 5.93 86.91 0.52 0.43 16 28 C -0.19 1.46 9.04 22.36 0.20 1.66 16 29 C -0.02 0.15 8.66 22.25 0.19 0.34 16 30 H 0.40 -5.17 8.74 -74.06 -0.65 -5.81 16 31 H 0.10 -0.97 7.96 -2.39 -0.02 -0.99 16 32 H 0.16 0.56 7.61 -2.91 -0.02 0.54 16 33 H 0.14 -1.90 7.02 -2.39 -0.02 -1.92 16 34 H 0.14 -1.84 7.48 -2.39 -0.02 -1.86 16 35 H 0.12 -2.21 5.75 -2.39 -0.01 -2.22 16 36 H 0.11 -1.81 8.08 -2.38 -0.02 -1.83 16 37 H 0.12 -2.09 7.97 -2.39 -0.02 -2.11 16 38 H 0.09 -1.12 7.97 -2.38 -0.02 -1.14 16 39 H 0.06 -0.06 8.03 -2.39 -0.02 -0.08 16 40 H 0.08 -0.40 8.03 -2.38 -0.02 -0.42 16 41 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.09 -0.92 8.04 -2.39 -0.02 -0.94 16 46 H 0.08 -0.65 8.04 -2.39 -0.02 -0.67 16 47 H 0.09 -0.21 7.97 -2.39 -0.02 -0.23 16 48 H 0.06 0.16 7.97 -2.39 -0.02 0.15 16 49 H 0.11 -0.67 8.08 -2.39 -0.02 -0.69 16 50 H 0.06 0.43 6.91 -2.39 -0.02 0.41 16 51 H 0.20 -3.67 6.30 -2.91 -0.02 -3.69 16 52 H 0.18 -2.43 4.86 -2.91 -0.01 -2.45 16 Total: 0.00 -37.34 417.22 4.90 -32.43 By element: Atomic # 1 Polarization: -19.05 SS G_CDS: 1.06 Total: -17.99 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.03 Total: 19.81 kcal Atomic # 7 Polarization: 2.67 SS G_CDS: -2.30 Total: 0.37 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.35 Total: -18.65 kcal Atomic # 14 Polarization: -18.44 SS G_CDS: 2.46 Total: -15.98 kcal Total: -37.34 4.90 -32.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_4549638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.099 kcal (2) G-P(sol) polarization free energy of solvation -37.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds