Wall clock time and date at job start Sun Mar 7 2021 04:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86304 * 109.47183 * 2 1 4 4 H 1.48500 * 109.46833 * 299.99978 * 3 2 1 5 5 H 1.48500 * 109.47193 * 60.00222 * 3 2 1 6 6 H 1.48503 * 109.47004 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.47319 * 239.99999 * 2 1 3 8 8 C 1.38125 * 119.97017 * 300.00329 * 7 2 1 9 9 C 1.38759 * 119.94334 * 179.97438 * 8 7 2 10 10 O 1.35893 * 120.05253 * 180.02562 * 9 8 7 11 11 C 1.42904 * 117.00067 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47636 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99833 * 359.97438 * 12 11 10 14 14 N 1.34771 * 119.99997 * 180.02562 * 12 11 10 15 15 C 1.46405 * 118.75550 * 179.97438 * 14 12 11 16 16 C 1.54441 * 108.77508 * 106.60111 * 15 14 12 17 17 Si 1.85203 * 107.11307 * 51.56103 * 16 15 14 18 18 C 1.87781 * 111.35874 * 191.90460 * 17 16 15 19 19 C 1.56400 * 98.97820 * 221.49497 * 18 17 16 20 20 C 1.53787 * 109.77241 * 39.37255 * 19 18 17 21 21 C 1.55681 * 111.39973 * 312.17800 * 20 19 18 22 22 C 1.85191 * 110.13768 * 315.95421 * 17 16 15 23 23 C 1.46399 * 118.75920 * 0.02562 * 14 12 11 24 24 C 1.38710 * 119.88596 * 0.27027 * 9 8 7 25 25 C 1.38163 * 119.94718 * 359.45413 * 24 9 8 26 26 C 1.38243 * 120.05232 * 0.56838 * 25 24 9 27 27 H 0.96702 * 113.99541 * 299.99884 * 1 2 3 28 28 H 1.09002 * 109.47715 * 120.00107 * 2 1 3 29 29 H 1.07995 * 120.02627 * 0.02562 * 8 7 2 30 30 H 1.08999 * 109.47182 * 59.99482 * 11 10 9 31 31 H 1.09005 * 109.46970 * 300.00038 * 11 10 9 32 32 H 1.09003 * 109.58360 * 346.81250 * 15 14 12 33 33 H 1.08998 * 109.58581 * 226.39211 * 15 14 12 34 34 H 1.09000 * 109.92939 * 292.16322 * 16 15 14 35 35 H 1.09006 * 109.92946 * 170.96253 * 16 15 14 36 36 H 1.08998 * 111.49541 * 104.05261 * 18 17 16 37 37 H 1.09004 * 111.49328 * 338.93289 * 18 17 16 38 38 H 1.09000 * 109.42104 * 279.28445 * 19 18 17 39 39 H 1.08997 * 109.42400 * 159.47017 * 19 18 17 40 40 H 1.09002 * 109.10218 * 72.69089 * 20 19 18 41 41 H 1.08998 * 109.10225 * 191.66532 * 20 19 18 42 42 H 1.09002 * 111.14271 * 145.90143 * 21 20 19 43 43 H 1.09002 * 111.14308 * 270.10946 * 21 20 19 44 44 H 1.09000 * 109.92700 * 163.44329 * 22 17 16 45 45 H 1.09001 * 109.93049 * 284.64068 * 22 17 16 46 46 H 1.08992 * 109.58322 * 13.17927 * 23 14 12 47 47 H 1.09002 * 109.58488 * 133.60650 * 23 14 12 48 48 H 1.08000 * 120.02503 * 179.72328 * 24 9 8 49 49 H 1.08000 * 119.97559 * 180.27911 * 25 24 9 50 50 H 1.08005 * 119.94611 * 179.70734 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5551 2.4565 1.2125 6 1 3.5351 1.7564 -0.0006 7 6 1.9314 -0.7104 -1.2305 8 6 1.5973 -2.0328 -1.4485 9 6 2.0597 -2.6862 -2.5819 10 8 1.7320 -3.9870 -2.7988 11 6 2.2439 -4.5958 -3.9861 12 6 1.7795 -6.0276 -4.0570 13 8 1.0794 -6.4823 -3.1771 14 7 2.1429 -6.8032 -5.0975 15 6 1.6767 -8.1904 -5.1386 16 6 0.5764 -8.3134 -6.2154 17 14 1.2558 -7.5811 -7.7749 18 6 -0.0915 -7.3385 -9.0602 19 6 0.6917 -7.8142 -10.3276 20 6 1.5626 -9.0315 -9.9745 21 6 2.3764 -8.7884 -8.6698 22 6 2.1291 -5.9905 -7.4048 23 6 2.9899 -6.2270 -6.1434 24 6 2.8613 -2.0108 -3.4904 25 6 3.1879 -0.6864 -3.2706 26 6 2.7263 -0.0378 -2.1404 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5138 0.8900 29 1 0.9760 -2.5574 -0.7378 30 1 3.3334 -4.5672 -3.9683 31 1 1.8805 -4.0527 -4.8585 32 1 1.2693 -8.4679 -4.1664 33 1 2.5088 -8.8482 -5.3896 34 1 -0.3118 -7.7640 -5.9033 35 1 0.3283 -9.3627 -6.3750 36 1 -0.3830 -6.2913 -9.1405 37 1 -0.9531 -7.9757 -8.8607 38 1 1.3281 -7.0048 -10.6853 39 1 -0.0164 -8.0896 -11.1091 40 1 0.9207 -9.9017 -9.8376 41 1 2.2535 -9.2258 -10.7949 42 1 2.4936 -9.7113 -8.1018 43 1 3.3447 -8.3380 -8.8885 44 1 2.7677 -5.7134 -8.2435 45 1 1.4006 -5.2021 -7.2151 46 1 3.4021 -5.2788 -5.7986 47 1 3.8007 -6.9166 -6.3781 48 1 3.2261 -2.5185 -4.3710 49 1 3.8083 -0.1588 -3.9800 50 1 2.9866 0.9961 -1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_4860298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:49 Heat of formation + Delta-G solvation = -104.173454 kcal Electronic energy + Delta-G solvation = -28487.353327 eV Core-core repulsion = 24603.528542 eV Total energy + Delta-G solvation = -3883.824785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 349.167 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.70114 -40.80046 -38.96886 -37.45329 -37.22299 -36.14389 -32.96888 -32.57824 -31.61865 -30.68249 -29.68762 -28.84857 -26.77870 -24.95971 -24.17173 -23.81207 -23.67691 -22.15058 -21.03513 -20.19195 -19.32964 -18.48900 -18.08535 -17.64412 -17.48699 -17.24796 -16.55683 -16.03870 -15.97780 -15.83196 -15.62686 -15.56849 -15.00313 -14.80872 -14.71122 -14.48785 -14.26983 -14.20096 -14.11091 -13.74950 -13.53898 -13.47941 -13.35985 -13.23360 -12.58441 -12.57189 -12.51821 -12.31849 -12.18567 -12.13428 -12.10126 -11.93681 -11.85843 -11.68370 -11.34731 -11.01000 -10.42967 -10.41311 -10.38290 -10.27113 -9.87442 -9.77068 -9.29942 0.19494 0.36765 1.14468 1.37375 1.44439 1.48695 1.53650 1.75270 1.85424 1.91217 1.95742 2.41562 2.63334 2.65935 3.28310 3.44868 3.77055 3.83471 3.94092 4.00192 4.06618 4.08335 4.11876 4.14768 4.15738 4.25464 4.27885 4.29498 4.35938 4.43777 4.49596 4.62859 4.63187 4.67141 4.67861 4.71379 4.83983 4.97249 5.01963 5.09818 5.14384 5.21558 5.22338 5.30837 5.33487 5.36934 5.39211 5.43772 5.51689 5.52873 5.58603 5.66954 6.12330 6.34265 6.79242 6.99603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.095 4.095 3 Si 0.993 3.007 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.251 1.251 7 C -0.049 4.049 8 C -0.146 4.146 9 C 0.114 3.886 10 O -0.322 6.322 11 C 0.036 3.964 12 C 0.506 3.494 13 O -0.575 6.575 14 N -0.603 5.603 15 C 0.115 3.885 16 C -0.446 4.446 17 Si 1.056 2.944 18 C -0.427 4.427 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.407 4.407 22 C -0.430 4.430 23 C 0.099 3.901 24 C -0.203 4.203 25 C -0.070 4.070 26 C -0.174 4.174 27 H 0.398 0.602 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.163 0.837 49 H 0.163 0.837 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 2.460 -5.157 8.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.203 4.203 3 Si 0.816 3.184 4 H -0.191 1.191 5 H -0.181 1.181 6 H -0.175 1.175 7 C -0.049 4.049 8 C -0.165 4.165 9 C 0.069 3.931 10 O -0.236 6.236 11 C -0.042 4.042 12 C 0.294 3.706 13 O -0.454 6.454 14 N -0.338 5.338 15 C -0.007 4.007 16 C -0.530 4.530 17 Si 1.246 2.754 18 C -0.512 4.512 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.493 4.493 22 C -0.518 4.518 23 C -0.022 4.022 24 C -0.222 4.222 25 C -0.087 4.087 26 C -0.192 4.192 27 H 0.248 0.752 28 H 0.109 0.891 29 H 0.136 0.864 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.181 0.819 49 H 0.180 0.820 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.557 2.580 -5.097 8.696 hybrid contribution -0.974 -0.614 0.486 1.250 sum 5.583 1.966 -4.611 7.503 Atomic orbital electron populations 1.86473 1.17600 1.82367 1.50970 1.25013 0.85632 1.11787 0.97915 0.85084 0.79798 0.73397 0.80130 1.19101 1.18123 1.17526 1.19342 0.96776 0.92829 0.95959 1.20302 1.03573 0.94825 0.97795 1.19206 0.95632 0.82935 0.95309 1.86128 1.71350 1.23231 1.42862 1.22864 1.01858 0.90915 0.88546 1.20674 0.79895 0.88151 0.81896 1.90738 1.39100 1.75247 1.40285 1.48166 1.51042 1.12104 1.22459 1.21397 0.98017 0.81076 1.00172 1.26946 1.02800 1.08289 1.14950 0.78737 0.66533 0.66940 0.63199 1.26878 1.09680 1.03499 1.11104 1.22067 0.98163 0.98149 0.97881 1.21888 0.98058 0.98007 0.98264 1.26567 1.07292 1.11529 1.03907 1.26632 1.07613 1.16068 1.01520 1.21975 0.92682 1.01354 0.86154 1.21606 1.02520 0.96709 1.01324 1.21274 0.97380 0.93653 0.96437 1.21187 1.01468 1.00646 0.95896 0.75154 0.89125 0.86411 0.85486 0.86006 0.91715 0.87574 0.92259 0.88890 0.90383 0.91458 0.90756 0.92689 0.92678 0.91858 0.90015 0.88957 0.86428 0.89946 0.87310 0.87174 0.81926 0.81986 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.91 12.74 -148.98 -1.90 -3.81 16 2 C -0.09 -0.16 2.81 71.24 0.20 0.04 16 3 Si 0.99 -0.92 25.07 68.60 1.72 0.80 16 4 H -0.27 -0.55 7.11 99.48 0.71 0.16 16 5 H -0.26 0.30 7.11 99.48 0.71 1.01 16 6 H -0.25 0.21 7.11 99.48 0.71 0.92 16 7 C -0.05 -0.28 5.42 -19.88 -0.11 -0.39 16 8 C -0.15 -1.34 9.55 22.37 0.21 -1.12 16 9 C 0.11 0.78 6.69 22.51 0.15 0.93 16 10 O -0.32 -3.04 9.67 -73.31 -0.71 -3.75 16 11 C 0.04 0.00 3.53 71.23 0.25 0.25 16 12 C 0.51 3.01 7.71 87.66 0.68 3.69 16 13 O -0.57 -10.18 15.76 16.00 0.25 -9.93 16 14 N -0.60 0.87 2.55 -816.49 -2.08 -1.21 16 15 C 0.11 -0.01 5.93 86.89 0.51 0.50 16 16 C -0.45 0.66 5.21 72.47 0.38 1.03 16 17 Si 1.06 -7.54 10.74 68.60 0.74 -6.80 16 18 C -0.43 1.12 5.94 73.17 0.43 1.55 16 19 C -0.13 0.33 5.97 32.04 0.19 0.52 16 20 C -0.12 0.40 6.09 31.78 0.19 0.60 16 21 C -0.41 2.75 5.84 72.91 0.43 3.17 16 22 C -0.43 4.42 5.21 72.50 0.38 4.79 16 23 C 0.10 -1.00 5.80 86.92 0.50 -0.50 16 24 C -0.20 0.05 9.04 22.36 0.20 0.25 16 25 C -0.07 0.07 10.04 22.25 0.22 0.29 16 26 C -0.17 -0.42 8.67 22.28 0.19 -0.23 16 27 H 0.40 -2.45 8.74 -74.06 -0.65 -3.10 16 28 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 29 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.13 -0.93 6.99 -2.39 -0.02 -0.95 16 31 H 0.12 -0.75 7.51 -2.38 -0.02 -0.76 16 32 H 0.06 0.43 6.90 -2.39 -0.02 0.42 16 33 H 0.11 -0.63 8.08 -2.39 -0.02 -0.65 16 34 H 0.06 0.19 7.97 -2.39 -0.02 0.17 16 35 H 0.09 -0.24 7.97 -2.38 -0.02 -0.26 16 36 H 0.08 -0.22 8.04 -2.39 -0.02 -0.24 16 37 H 0.07 -0.03 8.04 -2.39 -0.02 -0.05 16 38 H 0.07 -0.36 8.14 -2.39 -0.02 -0.37 16 39 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.08 -0.55 8.03 -2.39 -0.02 -0.57 16 43 H 0.09 -0.84 8.03 -2.39 -0.02 -0.86 16 44 H 0.12 -1.63 7.97 -2.39 -0.02 -1.65 16 45 H 0.08 -0.75 7.97 -2.39 -0.02 -0.77 16 46 H 0.11 -1.56 5.75 -2.39 -0.01 -1.57 16 47 H 0.11 -1.56 8.08 -2.39 -0.02 -1.58 16 48 H 0.16 -1.30 6.30 -2.91 -0.02 -1.32 16 49 H 0.16 -1.23 8.06 -2.91 -0.02 -1.26 16 50 H 0.13 -0.10 4.88 -2.91 -0.01 -0.11 16 Total: 0.00 -26.08 391.19 4.09 -22.00 By element: Atomic # 1 Polarization: -13.71 SS G_CDS: 1.04 Total: -12.66 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.02 Total: 15.37 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: -2.08 Total: -1.21 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -2.36 Total: -17.49 kcal Atomic # 14 Polarization: -8.46 SS G_CDS: 2.46 Total: -6.01 kcal Total: -26.08 4.09 -22.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_4860298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.176 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds