Wall clock time and date at job start Sun Mar 7 2021 05:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99565 * 2 1 4 4 C 1.38670 * 119.99783 * 0.02562 * 3 2 1 5 5 C 1.38154 * 119.99915 * 179.97438 * 4 3 2 6 6 C 1.38681 * 119.99691 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99886 * 180.02562 * 6 5 4 8 8 C 1.42905 * 117.00016 * 0.02562 * 7 6 5 9 9 C 1.50700 * 109.47021 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99684 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99976 * 179.97438 * 9 8 7 12 12 C 1.46399 * 118.75383 * 359.73596 * 11 9 8 13 13 C 1.53916 * 109.06614 * 253.44971 * 12 11 9 14 14 Si 1.85188 * 107.12374 * 308.57301 * 13 12 11 15 15 C 1.87450 * 111.52471 * 168.31502 * 14 13 12 16 16 C 1.55693 * 100.84780 * 114.79538 * 15 14 13 17 17 C 1.53783 * 111.39414 * 28.00315 * 16 15 14 18 18 C 1.56394 * 109.77040 * 312.17044 * 17 16 15 19 19 C 1.85199 * 110.14380 * 43.93479 * 14 13 12 20 20 C 1.46395 * 118.75135 * 180.02562 * 11 9 8 21 21 C 1.38712 * 120.00083 * 0.02562 * 6 5 4 22 22 C 1.50701 * 119.99957 * 179.97438 * 21 6 5 23 23 O 1.42895 * 109.47079 * 75.00898 * 22 21 6 24 24 Si 1.86301 * 109.47149 * 195.00393 * 22 21 6 25 25 H 1.48506 * 109.47302 * 59.99966 * 24 22 21 26 26 H 1.48503 * 109.47334 * 300.00099 * 24 22 21 27 27 H 1.48500 * 109.47376 * 180.02562 * 24 22 21 28 28 C 1.38110 * 119.99936 * 0.24058 * 21 6 5 29 29 H 1.08997 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46818 * 299.99390 * 1 2 3 31 31 H 1.08993 * 109.47435 * 59.99660 * 1 2 3 32 32 H 1.07996 * 120.00591 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.00545 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47003 * 300.00171 * 8 7 6 35 35 H 1.09004 * 109.46705 * 60.00512 * 8 7 6 36 36 H 1.09003 * 109.58584 * 13.19803 * 12 11 9 37 37 H 1.08996 * 109.58577 * 133.62481 * 12 11 9 38 38 H 1.09000 * 110.00080 * 189.12086 * 13 12 11 39 39 H 1.08999 * 109.84118 * 67.93239 * 13 12 11 40 40 H 1.08998 * 111.14678 * 232.69481 * 15 14 13 41 41 H 1.08998 * 111.14321 * 356.90339 * 15 14 13 42 42 H 1.08991 * 109.10466 * 267.48698 * 16 15 14 43 43 H 1.09005 * 109.09967 * 148.50560 * 16 15 14 44 44 H 1.09003 * 109.41594 * 192.07979 * 17 16 15 45 45 H 1.08999 * 109.42120 * 72.26538 * 17 16 15 46 46 H 1.09000 * 111.49493 * 281.94104 * 18 17 16 47 47 H 1.09002 * 111.49064 * 156.82934 * 18 17 16 48 48 H 1.08999 * 109.93129 * 196.56096 * 19 14 13 49 49 H 1.09005 * 109.92174 * 75.36505 * 19 14 13 50 50 H 1.09007 * 109.58629 * 226.37395 * 20 11 9 51 51 H 1.08994 * 109.59305 * 346.80161 * 20 11 9 52 52 H 1.09001 * 109.47380 * 315.00295 * 22 21 6 53 53 H 0.96708 * 113.99763 * 299.99687 * 23 22 21 54 54 H 1.08008 * 119.99731 * 179.72155 * 28 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2909 2.3746 0.0005 5 6 1.9180 3.6057 0.0011 6 6 3.3029 3.6783 0.0005 7 8 3.9202 4.8900 0.0016 8 6 3.0802 6.0461 0.0038 9 6 3.9343 7.2876 0.0053 10 8 5.1433 7.1918 0.0041 11 7 3.3546 8.5044 0.0070 12 6 1.8931 8.5881 0.0013 13 6 1.4205 9.0352 -1.3936 14 14 2.3758 10.5604 -1.8301 15 6 2.1611 11.0130 -3.6364 16 6 1.4128 12.3725 -3.5109 17 6 1.7635 13.0865 -2.1947 18 6 1.6508 12.0817 -1.0015 19 6 4.1619 10.3413 -1.3923 20 6 4.2105 9.6921 0.0079 21 6 4.0585 2.5150 -0.0011 22 6 5.5634 2.5940 -0.0022 23 8 6.0219 2.9658 1.2991 24 14 6.2721 0.9327 -0.4590 25 1 5.7957 0.5460 -1.8113 26 1 5.8305 -0.0829 0.5304 27 1 7.7551 1.0103 -0.4595 28 6 3.4315 1.2844 -0.0072 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.2125 2.3181 0.0005 33 1 1.3298 4.5114 0.0011 34 1 2.4502 6.0391 -0.8856 35 1 2.4517 6.0368 0.8944 36 1 1.4701 7.6101 0.2309 37 1 1.5658 9.3139 0.7458 38 1 0.3538 9.2584 -1.3720 39 1 1.6219 8.2496 -2.1218 40 1 3.1259 11.1392 -4.1276 41 1 1.5507 10.2750 -4.1568 42 1 0.3383 12.1927 -3.5439 43 1 1.6915 13.0118 -4.3487 44 1 1.0734 13.9153 -2.0370 45 1 2.7823 13.4699 -2.2507 46 1 0.6125 11.9216 -0.7109 47 1 2.2555 12.4005 -0.1525 48 1 4.6606 11.3102 -1.3702 49 1 4.6456 9.6901 -2.1205 50 1 3.8496 10.4020 0.7522 51 1 5.2353 9.4040 0.2415 52 1 5.8876 3.3394 -0.7285 53 1 5.6914 3.8225 1.6026 54 1 4.0199 0.3787 -0.0130 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_4974302.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:00:01 Heat of formation + Delta-G solvation = -141.553035 kcal Electronic energy + Delta-G solvation = -33450.558288 eV Core-core repulsion = 29090.892791 eV Total energy + Delta-G solvation = -4359.665496 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 379.182 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.88445 -41.10703 -39.90939 -38.18770 -37.35657 -36.90950 -36.14644 -32.98838 -32.73973 -31.18204 -30.55226 -29.68564 -28.94983 -27.95564 -26.59084 -24.98818 -24.34785 -23.97916 -23.11957 -22.40631 -21.04363 -20.21388 -19.62981 -18.89684 -18.26801 -18.03151 -17.65999 -17.46216 -16.95435 -16.64784 -16.26744 -16.05232 -15.92669 -15.65884 -15.60745 -15.56138 -15.31584 -14.85689 -14.77869 -14.35398 -14.28639 -14.18010 -14.11154 -13.85553 -13.57995 -13.53953 -13.42795 -13.32561 -13.00782 -12.67205 -12.53428 -12.43603 -12.29653 -12.28337 -12.26567 -12.12030 -11.94473 -11.82951 -11.45039 -11.36522 -11.23492 -11.10842 -10.94707 -10.44311 -10.37305 -10.22781 -10.10967 -9.74611 -8.82942 0.05109 0.32534 1.14908 1.41061 1.44298 1.46928 1.48840 1.76292 1.86921 1.90516 1.95158 2.31871 2.43837 2.54104 2.66510 3.30876 3.53524 3.70288 3.85834 3.89493 4.04202 4.08084 4.11147 4.12506 4.13137 4.14388 4.18491 4.21792 4.30840 4.33782 4.37393 4.42235 4.43252 4.44266 4.63220 4.65426 4.67690 4.69822 4.72568 4.76690 4.86191 4.97663 5.04518 5.11478 5.11877 5.12721 5.19283 5.20887 5.32217 5.36304 5.39831 5.41174 5.52670 5.55296 5.58257 6.09915 6.26146 6.43088 6.56615 7.04021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.159 4.159 5 C -0.157 4.157 6 C 0.096 3.904 7 O -0.313 6.313 8 C 0.035 3.965 9 C 0.507 3.493 10 O -0.570 6.570 11 N -0.604 5.604 12 C 0.099 3.901 13 C -0.430 4.430 14 Si 1.056 2.944 15 C -0.428 4.428 16 C -0.123 4.123 17 C -0.129 4.129 18 C -0.406 4.406 19 C -0.445 4.445 20 C 0.116 3.884 21 C -0.116 4.116 22 C -0.088 4.088 23 O -0.549 6.549 24 Si 1.035 2.965 25 H -0.239 1.239 26 H -0.260 1.260 27 H -0.271 1.271 28 C -0.137 4.137 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.171 0.829 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.090 0.910 49 H 0.060 0.940 50 H 0.104 0.896 51 H 0.066 0.934 52 H 0.078 0.922 53 H 0.375 0.625 54 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 3.766 -0.229 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.178 4.178 5 C -0.175 4.175 6 C 0.051 3.949 7 O -0.226 6.226 8 C -0.043 4.043 9 C 0.295 3.705 10 O -0.449 6.449 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.518 4.518 14 Si 1.246 2.754 15 C -0.512 4.512 16 C -0.160 4.160 17 C -0.166 4.166 18 C -0.492 4.492 19 C -0.529 4.529 20 C -0.005 4.005 21 C -0.117 4.117 22 C -0.196 4.196 23 O -0.356 6.356 24 Si 0.855 3.145 25 H -0.162 1.162 26 H -0.185 1.185 27 H -0.196 1.196 28 C -0.156 4.156 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.181 0.819 33 H 0.188 0.812 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.102 0.898 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.122 0.878 51 H 0.084 0.916 52 H 0.096 0.904 53 H 0.224 0.776 54 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.640 2.222 -0.484 9.904 hybrid contribution -0.335 1.496 -0.203 1.547 sum -9.974 3.718 -0.688 10.667 Atomic orbital electron populations 1.23360 0.76233 1.05566 1.02532 1.86083 1.23594 1.26635 1.89030 1.18974 0.91831 0.85442 0.99370 1.21408 1.01598 0.90773 1.03977 1.21403 0.92092 0.99966 1.04065 1.18727 0.91647 0.84183 1.00386 1.86098 1.35455 1.11771 1.89312 1.22861 0.92787 0.82042 1.06576 1.20640 0.88212 0.85736 0.75928 1.90749 1.16684 1.87101 1.50321 1.48148 1.08454 1.04764 1.72506 1.21821 0.76342 1.05633 0.98332 1.26518 1.10087 1.15063 1.00158 0.78719 0.64417 0.66664 0.65613 1.26734 1.02857 1.00941 1.20663 1.21886 1.00722 0.96021 0.97412 1.22078 1.01658 0.99080 0.93821 1.26735 1.07402 1.13771 1.01315 1.26917 1.22457 1.03648 0.99873 1.21360 0.95551 0.85931 0.97707 1.19412 0.96378 0.90707 1.05248 1.25287 0.92303 1.13399 0.88602 1.86632 1.74153 1.42548 1.32261 0.84213 0.78192 0.72343 0.79717 1.16215 1.18492 1.19646 1.20276 0.92888 0.97229 1.05174 0.86918 0.91349 0.91221 0.81919 0.81202 0.86011 0.85610 0.87234 0.87444 0.86448 0.89832 0.91638 0.90076 0.91423 0.93028 0.91847 0.92190 0.89095 0.89831 0.89091 0.92130 0.87824 0.91555 0.90436 0.77621 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.34 -1.38 10.50 -93.46 -0.98 -2.36 16 3 C 0.09 0.38 6.69 22.49 0.15 0.53 16 4 C -0.16 0.25 9.03 22.35 0.20 0.46 16 5 C -0.16 0.42 9.03 22.36 0.20 0.62 16 6 C 0.10 0.32 6.62 22.49 0.15 0.47 16 7 O -0.31 -1.32 8.56 -74.35 -0.64 -1.95 16 8 C 0.03 -0.13 3.52 71.24 0.25 0.12 16 9 C 0.51 1.34 7.71 87.66 0.68 2.01 16 10 O -0.57 -7.88 15.76 16.00 0.25 -7.62 16 11 N -0.60 2.23 2.56 -817.76 -2.09 0.14 16 12 C 0.10 -1.18 5.75 86.71 0.50 -0.68 16 13 C -0.43 5.11 5.19 72.29 0.38 5.49 16 14 Si 1.06 -8.79 10.74 68.60 0.74 -8.06 16 15 C -0.43 1.55 5.84 72.91 0.43 1.97 16 16 C -0.12 0.33 6.10 31.79 0.19 0.52 16 17 C -0.13 0.47 5.97 32.04 0.19 0.66 16 18 C -0.41 3.06 5.94 73.16 0.43 3.49 16 19 C -0.44 1.27 5.20 72.46 0.38 1.65 16 20 C 0.12 -0.21 5.93 86.88 0.51 0.31 16 21 C -0.12 -0.79 5.28 -19.78 -0.10 -0.89 16 22 C -0.09 -0.70 2.33 71.24 0.17 -0.54 16 23 O -0.55 -5.62 12.65 -148.98 -1.89 -7.50 16 24 Si 1.03 6.79 25.73 68.60 1.77 8.55 16 25 H -0.24 -1.13 7.11 99.48 0.71 -0.42 16 26 H -0.26 -2.02 6.74 99.48 0.67 -1.35 16 27 H -0.27 -2.38 7.11 99.48 0.71 -1.67 16 28 C -0.14 -0.95 8.59 22.35 0.19 -0.76 16 29 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 31 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 32 H 0.16 -1.27 6.29 -2.91 -0.02 -1.29 16 33 H 0.17 -1.86 6.29 -2.91 -0.02 -1.88 16 34 H 0.12 -1.18 7.48 -2.39 -0.02 -1.20 16 35 H 0.13 -1.33 7.02 -2.38 -0.02 -1.35 16 36 H 0.11 -1.80 5.75 -2.39 -0.01 -1.81 16 37 H 0.11 -1.66 8.08 -2.39 -0.02 -1.68 16 38 H 0.12 -1.79 7.97 -2.39 -0.02 -1.81 16 39 H 0.08 -0.92 7.97 -2.39 -0.02 -0.94 16 40 H 0.06 -0.09 8.03 -2.39 -0.02 -0.11 16 41 H 0.08 -0.35 8.03 -2.39 -0.02 -0.37 16 42 H 0.07 -0.27 8.14 -2.39 -0.02 -0.28 16 43 H 0.05 -0.04 8.14 -2.38 -0.02 -0.06 16 44 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.09 -0.84 8.04 -2.39 -0.02 -0.86 16 47 H 0.08 -0.67 8.04 -2.39 -0.02 -0.69 16 48 H 0.09 -0.32 7.97 -2.39 -0.02 -0.34 16 49 H 0.06 0.09 7.97 -2.38 -0.02 0.07 16 50 H 0.10 -0.74 8.08 -2.38 -0.02 -0.76 16 51 H 0.07 0.32 6.91 -2.39 -0.02 0.30 16 52 H 0.08 0.61 7.82 -2.39 -0.02 0.59 16 53 H 0.38 2.69 8.60 -74.05 -0.64 2.06 16 54 H 0.13 0.91 4.88 -2.91 -0.01 0.90 16 Total: 0.00 -23.81 419.25 4.16 -19.66 By element: Atomic # 1 Polarization: -18.29 SS G_CDS: 0.99 Total: -17.30 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.01 Total: 16.45 kcal Atomic # 7 Polarization: 2.23 SS G_CDS: -2.09 Total: 0.14 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -3.25 Total: -19.44 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: 2.50 Total: 0.50 kcal Total: -23.81 4.16 -19.66 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_4974302.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.894 kcal (2) G-P(sol) polarization free energy of solvation -23.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds