Wall clock time and date at job start Sun Mar 7 2021 05:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86292 * 109.47079 * 2 1 4 4 H 1.48500 * 109.47502 * 300.00592 * 3 2 1 5 5 H 1.48502 * 109.47289 * 60.00363 * 3 2 1 6 6 H 1.48508 * 109.47297 * 180.02562 * 3 2 1 7 7 C 1.50707 * 109.46644 * 240.00399 * 2 1 3 8 8 C 1.38249 * 119.93959 * 120.02054 * 7 2 1 9 9 C 1.38233 * 120.04380 * 179.97438 * 8 7 2 10 10 Br 1.89096 * 120.03722 * 179.97438 * 9 8 7 11 11 C 1.38795 * 119.92727 * 359.73068 * 9 8 7 12 12 O 1.35926 * 120.05906 * 180.29371 * 11 9 8 13 13 C 1.42900 * 117.00069 * 180.25142 * 12 11 9 14 14 C 1.50690 * 109.46915 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00319 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99950 * 180.02562 * 14 13 12 17 17 C 1.46400 * 118.75321 * 359.73035 * 16 14 13 18 18 C 1.53924 * 109.06328 * 253.45145 * 17 16 14 19 19 Si 1.85193 * 107.12337 * 308.56944 * 18 17 16 20 20 C 1.87461 * 111.51901 * 168.31737 * 19 18 17 21 21 C 1.55690 * 100.84330 * 114.80261 * 20 19 18 22 22 C 1.53776 * 111.39836 * 27.99205 * 21 20 19 23 23 C 1.56389 * 109.77576 * 312.17543 * 22 21 20 24 24 C 1.85201 * 110.14145 * 43.94020 * 19 18 17 25 25 C 1.46397 * 118.75733 * 179.97438 * 16 14 13 26 26 C 1.38715 * 119.88418 * 0.54724 * 11 9 8 27 27 C 1.38148 * 119.95325 * 359.44505 * 26 11 9 28 28 H 0.96697 * 114.00630 * 59.99627 * 1 2 3 29 29 H 1.08997 * 109.47411 * 120.00438 * 2 1 3 30 30 H 1.07997 * 119.97442 * 359.95422 * 8 7 2 31 31 H 1.09001 * 109.46730 * 300.00465 * 13 12 11 32 32 H 1.09003 * 109.47040 * 59.99673 * 13 12 11 33 33 H 1.09001 * 109.58487 * 13.19783 * 17 16 14 34 34 H 1.08993 * 109.59003 * 133.62599 * 17 16 14 35 35 H 1.09000 * 110.00207 * 189.12042 * 18 17 16 36 36 H 1.08998 * 109.84124 * 67.93436 * 18 17 16 37 37 H 1.09002 * 111.13922 * 232.69517 * 20 19 18 38 38 H 1.08995 * 111.14608 * 356.89970 * 20 19 18 39 39 H 1.09000 * 109.09701 * 267.47998 * 21 20 19 40 40 H 1.09003 * 109.10089 * 148.50590 * 21 20 19 41 41 H 1.09005 * 109.41382 * 192.08047 * 22 21 20 42 42 H 1.08996 * 109.41870 * 72.27510 * 22 21 20 43 43 H 1.09003 * 111.49425 * 281.94301 * 23 22 21 44 44 H 1.09004 * 111.49224 * 156.82719 * 23 22 21 45 45 H 1.08998 * 109.92105 * 196.56249 * 24 19 18 46 46 H 1.08998 * 109.92601 * 75.36546 * 24 19 18 47 47 H 1.08994 * 109.58862 * 226.37087 * 25 16 14 48 48 H 1.09000 * 109.58738 * 346.80505 * 25 16 14 49 49 H 1.08002 * 120.02748 * 179.72835 * 26 11 9 50 50 H 1.08001 * 119.96702 * 180.29890 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 1 1.5548 2.4565 -1.2124 5 1 1.5550 2.4564 1.2125 6 1 3.5350 1.7564 -0.0006 7 6 1.9312 -0.7104 -1.2306 8 6 2.7263 -0.0374 -2.1396 9 6 3.1885 -0.6870 -3.2688 10 35 4.2754 0.2339 -4.5124 11 6 2.8583 -2.0175 -3.4863 12 8 3.3163 -2.6606 -4.5927 13 6 2.9320 -4.0274 -4.7543 14 6 3.5295 -4.5700 -6.0269 15 8 4.2163 -3.8564 -6.7268 16 7 3.2997 -5.8481 -6.3878 17 6 2.4707 -6.6867 -5.5202 18 6 3.3721 -7.6946 -4.7847 19 14 4.4084 -8.5368 -6.0678 20 6 5.7932 -9.5316 -5.2888 21 6 5.3780 -10.9770 -5.6917 22 6 4.5709 -10.9846 -7.0006 23 6 3.4488 -9.8971 -6.9366 24 6 5.0610 -7.2946 -7.2765 25 6 3.8931 -6.3468 -7.6298 26 6 2.0556 -2.6882 -2.5752 27 6 1.5964 -2.0343 -1.4482 28 1 -0.3934 0.4417 -0.7650 29 1 1.7923 -0.5139 0.8899 30 1 2.9860 0.9966 -1.9675 31 1 3.2938 -4.6092 -3.9065 32 1 1.8453 -4.0958 -4.8046 33 1 1.9562 -6.0612 -4.7907 34 1 1.7396 -7.2254 -6.1229 35 1 2.7602 -8.4289 -4.2608 36 1 4.0123 -7.1696 -4.0758 37 1 6.7586 -9.2654 -5.7191 38 1 5.8016 -9.4124 -4.2054 39 1 4.7712 -11.4087 -4.8958 40 1 6.2750 -11.5825 -5.8221 41 1 4.1172 -11.9658 -7.1408 42 1 5.2356 -10.7708 -7.8375 43 1 2.6013 -10.2324 -6.3387 44 1 3.1336 -9.5893 -7.9336 45 1 5.4135 -7.8006 -8.1753 46 1 5.8753 -6.7284 -6.8242 47 1 3.1411 -6.8906 -8.2014 48 1 4.2673 -5.5090 -8.2181 49 1 1.7936 -3.7222 -2.7444 50 1 0.9754 -2.5577 -0.7363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_6201210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:06:10 Heat of formation + Delta-G solvation = -98.449876 kcal Electronic energy + Delta-G solvation = -30705.736158 eV Core-core repulsion = 26482.341563 eV Total energy + Delta-G solvation = -4223.394595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 427.077 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.79018 -40.89833 -39.19406 -37.42826 -37.14803 -36.14398 -33.54938 -32.87955 -32.10055 -30.96011 -30.29030 -29.68307 -29.01949 -26.36542 -24.98434 -24.38673 -24.01887 -23.35597 -22.36368 -21.04176 -20.24075 -19.66296 -18.50530 -17.96691 -17.57102 -17.53862 -16.72700 -16.56133 -16.20912 -16.03340 -15.95021 -15.70933 -15.58210 -15.17044 -15.03535 -14.80046 -14.48677 -14.36030 -14.31291 -14.18498 -13.88526 -13.72961 -13.50580 -13.38968 -13.33036 -12.67414 -12.46202 -12.40654 -12.31970 -12.29874 -12.22005 -12.15324 -12.11663 -11.94172 -11.88645 -11.68713 -11.36106 -11.24012 -10.98406 -10.44282 -10.42927 -10.37649 -10.22433 -10.01183 -9.75331 -9.31486 -0.04092 0.07735 0.61024 1.17005 1.37483 1.41866 1.42421 1.48762 1.76477 1.86880 1.90108 1.95493 2.34540 2.40331 2.66339 3.27115 3.48553 3.57040 3.74866 3.78663 3.98252 4.00646 4.07005 4.10686 4.12944 4.14728 4.17183 4.30584 4.33822 4.37545 4.44390 4.51090 4.63575 4.65884 4.69057 4.70178 4.72380 4.79524 4.85458 5.04293 5.05589 5.11826 5.13078 5.21174 5.30395 5.31708 5.36725 5.41279 5.46480 5.52978 5.55678 5.58630 6.03374 6.23408 6.71598 7.03138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.057 4.057 3 Si 0.951 3.049 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.151 4.151 8 C -0.068 4.068 9 C -0.142 4.142 10 Br -0.055 7.055 11 C 0.148 3.852 12 O -0.306 6.306 13 C 0.032 3.968 14 C 0.506 3.494 15 O -0.571 6.571 16 N -0.604 5.604 17 C 0.099 3.901 18 C -0.429 4.429 19 Si 1.056 2.944 20 C -0.428 4.428 21 C -0.123 4.123 22 C -0.129 4.129 23 C -0.406 4.406 24 C -0.446 4.446 25 C 0.116 3.884 26 C -0.193 4.193 27 C -0.026 4.026 28 H 0.390 0.610 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.176 0.824 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -7.332 4.229 10.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.169 4.169 3 Si 0.777 3.223 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.152 4.152 8 C -0.088 4.088 9 C -0.222 4.222 10 Br 0.030 6.970 11 C 0.100 3.900 12 O -0.219 6.219 13 C -0.046 4.046 14 C 0.293 3.707 15 O -0.449 6.449 16 N -0.338 5.338 17 C -0.022 4.022 18 C -0.518 4.518 19 Si 1.245 2.755 20 C -0.512 4.512 21 C -0.160 4.160 22 C -0.166 4.166 23 C -0.492 4.492 24 C -0.530 4.530 25 C -0.005 4.005 26 C -0.212 4.212 27 C -0.044 4.044 28 H 0.239 0.761 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.193 0.807 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.081 -5.977 3.738 8.690 hybrid contribution 0.478 -0.230 -0.718 0.892 sum -4.603 -6.207 3.020 8.297 Atomic orbital electron populations 1.86490 1.16905 1.81692 1.50220 1.24668 0.85085 1.08991 0.98130 0.85660 0.79813 0.76532 0.80310 1.18107 1.19254 1.18585 1.20348 1.00938 0.96225 0.97725 1.20935 0.96332 0.99785 0.91749 1.21117 1.07777 0.94149 0.99147 1.96759 1.66691 1.75436 1.58135 1.18825 0.93623 0.90493 0.87023 1.86252 1.70040 1.25707 1.39872 1.22974 1.02843 0.81255 0.97497 1.20637 0.80477 0.82673 0.86889 1.90763 1.40097 1.58983 1.55048 1.48157 1.51145 1.10268 1.24273 1.21844 0.92699 0.93725 0.93893 1.26508 1.08709 1.06012 1.10522 0.78728 0.66419 0.64429 0.65876 1.26732 1.12309 1.05522 1.06625 1.21883 0.99539 0.96899 0.97703 1.22076 0.97052 1.00145 0.97372 1.26729 1.03153 1.10859 1.08437 1.26951 1.02260 1.10376 1.13373 1.21377 0.95912 0.97987 0.85267 1.21656 1.01365 1.02691 0.95511 1.21253 0.94847 0.92614 0.95704 0.76125 0.84481 0.84942 0.85391 0.85087 0.87083 0.87365 0.86295 0.89768 0.91717 0.90018 0.91356 0.93051 0.91816 0.92254 0.89004 0.89864 0.89145 0.92234 0.87737 0.91749 0.80713 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.01 12.77 -148.98 -1.90 0.11 16 2 C -0.06 0.24 2.82 71.24 0.20 0.44 16 3 Si 0.95 -0.99 25.07 68.60 1.72 0.73 16 4 H -0.26 -0.08 7.11 99.48 0.71 0.63 16 5 H -0.27 -0.51 7.11 99.48 0.71 0.19 16 6 H -0.26 -0.32 7.11 99.48 0.71 0.38 16 7 C -0.15 0.33 5.39 -19.85 -0.11 0.23 16 8 C -0.07 -0.16 8.40 22.27 0.19 0.03 16 9 C -0.14 -0.85 6.24 22.40 0.14 -0.71 16 10 Br -0.06 -0.56 33.16 -20.37 -0.68 -1.23 16 11 C 0.15 0.42 6.68 22.52 0.15 0.57 16 12 O -0.31 -1.78 9.01 -73.68 -0.66 -2.44 16 13 C 0.03 -0.10 3.52 71.23 0.25 0.15 16 14 C 0.51 1.88 7.71 87.65 0.68 2.56 16 15 O -0.57 -8.98 15.76 16.01 0.25 -8.73 16 16 N -0.60 1.87 2.56 -817.58 -2.09 -0.22 16 17 C 0.10 -1.17 5.76 86.71 0.50 -0.67 16 18 C -0.43 5.12 5.19 72.29 0.38 5.49 16 19 Si 1.06 -8.55 10.74 68.60 0.74 -7.81 16 20 C -0.43 1.46 5.84 72.91 0.43 1.89 16 21 C -0.12 0.31 6.10 31.78 0.19 0.51 16 22 C -0.13 0.45 5.97 32.04 0.19 0.64 16 23 C -0.41 3.00 5.94 73.16 0.43 3.44 16 24 C -0.45 1.01 5.21 72.49 0.38 1.39 16 25 C 0.12 -0.13 5.93 86.91 0.52 0.39 16 26 C -0.19 0.95 9.04 22.36 0.20 1.15 16 27 C -0.03 0.14 9.60 22.26 0.21 0.35 16 28 H 0.39 -3.56 8.70 -74.06 -0.64 -4.21 16 29 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 30 H 0.13 0.25 4.87 -2.91 -0.01 0.24 16 31 H 0.13 -1.28 7.48 -2.39 -0.02 -1.30 16 32 H 0.13 -1.40 7.01 -2.39 -0.02 -1.42 16 33 H 0.11 -1.85 5.75 -2.39 -0.01 -1.87 16 34 H 0.11 -1.67 8.08 -2.39 -0.02 -1.69 16 35 H 0.12 -1.84 7.97 -2.39 -0.02 -1.86 16 36 H 0.08 -0.94 7.97 -2.39 -0.02 -0.96 16 37 H 0.06 -0.07 8.03 -2.39 -0.02 -0.09 16 38 H 0.08 -0.35 8.03 -2.39 -0.02 -0.37 16 39 H 0.07 -0.27 8.14 -2.39 -0.02 -0.28 16 40 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.06 -0.19 8.14 -2.38 -0.02 -0.21 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.09 -0.85 8.04 -2.39 -0.02 -0.87 16 44 H 0.08 -0.65 8.04 -2.39 -0.02 -0.67 16 45 H 0.09 -0.27 7.97 -2.39 -0.02 -0.29 16 46 H 0.06 0.13 7.97 -2.39 -0.02 0.11 16 47 H 0.10 -0.69 8.08 -2.39 -0.02 -0.71 16 48 H 0.06 0.38 6.90 -2.39 -0.02 0.36 16 49 H 0.18 -2.24 6.30 -2.91 -0.02 -2.26 16 50 H 0.16 -1.63 8.06 -2.91 -0.02 -1.66 16 Total: 0.00 -25.17 411.51 3.37 -21.79 By element: Atomic # 1 Polarization: -21.10 SS G_CDS: 1.07 Total: -20.03 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 4.93 Total: 17.83 kcal Atomic # 7 Polarization: 1.87 SS G_CDS: -2.09 Total: -0.22 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -2.31 Total: -11.06 kcal Atomic # 14 Polarization: -9.54 SS G_CDS: 2.46 Total: -7.08 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -0.68 Total: -1.23 kcal Total: -25.17 3.37 -21.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_6201210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.657 kcal (2) G-P(sol) polarization free energy of solvation -25.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds