Wall clock time and date at job start Sun Mar 7 2021 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00007 * 2 1 4 4 O 1.20825 * 120.00278 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00046 * 180.27725 * 3 2 1 6 6 C 1.53900 * 113.59500 * 278.91609 * 5 3 2 7 7 C 1.53316 * 86.83462 * 220.49201 * 6 5 3 8 8 C 1.53142 * 87.75966 * 25.01022 * 7 6 5 9 9 C 1.53749 * 114.69650 * 268.65807 * 7 6 5 10 10 C 1.55300 * 102.73327 * 251.57910 * 9 7 6 11 11 C 1.54974 * 101.66434 * 325.01059 * 10 9 7 12 12 N 1.46379 * 115.40974 * 142.16305 * 7 6 5 13 13 C 1.34777 * 125.79736 * 311.06359 * 12 7 6 14 14 O 1.21690 * 120.00105 * 358.88481 * 13 12 7 15 15 C 1.46684 * 119.99946 * 178.89236 * 13 12 7 16 16 C 1.37872 * 126.23304 * 8.10862 * 15 13 12 17 17 C 1.39832 * 107.08295 * 179.84802 * 16 15 13 18 18 C 1.35449 * 107.86545 * 0.42181 * 17 16 15 19 19 C 1.50703 * 125.56182 * 179.77831 * 18 17 16 20 20 O 1.42895 * 109.47120 * 149.95931 * 19 18 17 21 21 Si 1.86296 * 109.47440 * 29.95195 * 19 18 17 22 22 N 1.35531 * 108.87427 * 359.73662 * 18 17 16 23 23 C 1.46493 * 125.67896 * 180.02562 * 22 18 17 24 24 H 1.09009 * 109.47138 * 60.00201 * 1 2 3 25 25 H 1.08993 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47419 * 300.00381 * 1 2 3 27 27 H 1.09001 * 112.84276 * 50.05129 * 5 3 2 28 28 H 1.09000 * 113.64303 * 334.96442 * 6 5 3 29 29 H 1.09000 * 113.64686 * 105.96478 * 6 5 3 30 30 H 1.08999 * 113.64404 * 220.48901 * 8 7 6 31 31 H 1.09003 * 113.64222 * 89.49113 * 8 7 6 32 32 H 1.08998 * 110.75389 * 9.88746 * 9 7 6 33 33 H 1.08994 * 110.75496 * 133.08083 * 9 7 6 34 34 H 1.08991 * 110.99403 * 83.10696 * 10 9 7 35 35 H 1.09004 * 110.98714 * 206.88991 * 10 9 7 36 36 H 1.09005 * 110.35511 * 155.52789 * 11 10 9 37 37 H 1.08992 * 110.36400 * 277.83543 * 11 10 9 38 38 H 1.07997 * 126.45427 * 359.96907 * 16 15 13 39 39 H 1.08001 * 126.06605 * 180.17917 * 17 16 15 40 40 H 1.09002 * 109.46536 * 269.95346 * 19 18 17 41 41 H 0.96698 * 114.00230 * 180.02562 * 20 19 18 42 42 H 1.48502 * 110.00050 * 298.68678 * 21 19 18 43 43 H 1.48504 * 109.99986 * 60.00332 * 21 19 18 44 44 H 1.08998 * 109.47613 * 275.54645 * 23 22 18 45 45 H 1.09001 * 109.47144 * 35.55132 * 23 22 18 46 46 H 1.09011 * 109.47212 * 155.54727 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.1989 1.0858 1.3839 7 6 5.1730 2.2055 0.9992 8 6 4.1078 2.7151 0.0240 9 6 6.4752 1.7250 0.3381 10 6 7.5343 1.9757 1.4460 11 6 6.9968 3.2707 2.1060 12 7 5.5278 3.1278 2.0790 13 6 4.6605 3.7421 2.9079 14 8 3.4639 3.5629 2.7781 15 6 5.1591 4.6267 3.9665 16 6 6.4625 5.0441 4.1330 17 6 6.4875 5.8741 5.2581 18 6 5.2286 5.9401 5.7538 19 6 4.8052 6.7243 6.9690 20 8 3.4480 7.1443 6.8158 21 14 5.9006 8.2196 7.1560 22 7 4.4119 5.1865 4.9780 23 6 2.9733 4.9993 5.1817 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 4.0193 0.6546 -0.7797 28 1 3.5335 1.3486 2.2063 29 1 4.6775 0.1157 1.5181 30 1 4.5135 3.0497 -0.9308 31 1 3.4171 3.4326 0.4669 32 1 6.4157 0.6645 0.0933 33 1 6.6965 2.3137 -0.5522 34 1 7.5543 1.1528 2.1604 35 1 8.5213 2.1383 1.0130 36 1 7.3515 3.3479 3.1338 37 1 7.3034 4.1447 1.5314 38 1 7.3050 4.7812 3.5106 39 1 7.3570 6.3709 5.6626 40 1 4.8933 6.0962 7.8555 41 1 3.1079 7.6560 7.5624 42 1 7.3108 7.7953 7.3480 43 1 5.7896 9.0841 5.9537 44 1 2.8095 4.1985 5.9027 45 1 2.5366 5.9237 5.5598 46 1 2.5033 4.7366 4.2338 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_10803936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:32:51 Heat of formation + Delta-G solvation = -46.553502 kcal Electronic energy + Delta-G solvation = -30484.897390 eV Core-core repulsion = 26344.132193 eV Total energy + Delta-G solvation = -4140.765197 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.93167 -42.26115 -41.11542 -39.11866 -37.78322 -37.72145 -36.82297 -34.10050 -32.86749 -31.43843 -29.78929 -28.25010 -27.65506 -27.05664 -26.95561 -25.46568 -23.88996 -22.46047 -22.30947 -21.31813 -20.40338 -19.48914 -18.88141 -18.46565 -18.02620 -17.97384 -17.51961 -17.21458 -17.08295 -16.49210 -16.35759 -15.79895 -15.68951 -15.37313 -15.08767 -14.98837 -14.91910 -14.51287 -14.22418 -14.12070 -13.93314 -13.71533 -13.66161 -13.47000 -13.42516 -13.26680 -13.23612 -12.99203 -12.70315 -12.36449 -12.01165 -11.98109 -11.94885 -11.93564 -11.78994 -11.51939 -11.39722 -10.99927 -10.61328 -9.96533 -9.81210 -9.21664 -4.95174 0.22359 1.01236 1.10503 1.36006 1.54266 1.69528 1.71531 2.06592 2.12851 2.16669 3.13992 3.14393 3.24916 3.31085 3.50757 3.52909 3.62015 3.74745 3.85550 3.88023 4.06689 4.12679 4.17734 4.18399 4.19928 4.21417 4.34153 4.37452 4.42210 4.49895 4.58103 4.60682 4.64563 4.72927 4.75090 4.78489 4.86699 4.87989 4.92024 4.95190 5.07659 5.15367 5.25210 5.31446 5.43883 5.61081 5.82049 5.98533 6.31026 6.59907 6.79027 6.94470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.542 6.542 5 C -0.096 4.096 6 C -0.121 4.121 7 C 0.148 3.852 8 C -0.129 4.129 9 C -0.104 4.104 10 C -0.124 4.124 11 C 0.072 3.928 12 N -0.591 5.591 13 C 0.595 3.405 14 O -0.576 6.576 15 C -0.080 4.080 16 C -0.139 4.139 17 C -0.231 4.231 18 C 0.047 3.953 19 C -0.066 4.066 20 O -0.567 6.567 21 Si 0.823 3.177 22 N -0.401 5.401 23 C 0.062 3.938 24 H 0.062 0.938 25 H 0.134 0.866 26 H 0.051 0.949 27 H 0.167 0.833 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.188 0.812 39 H 0.159 0.841 40 H 0.102 0.898 41 H 0.409 0.591 42 H -0.275 1.275 43 H -0.311 1.311 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -1.795 3.194 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.431 6.431 5 C -0.115 4.115 6 C -0.159 4.159 7 C 0.062 3.938 8 C -0.167 4.167 9 C -0.141 4.141 10 C -0.162 4.162 11 C -0.049 4.049 12 N -0.321 5.321 13 C 0.386 3.614 14 O -0.458 6.458 15 C -0.193 4.193 16 C -0.165 4.165 17 C -0.255 4.255 18 C -0.071 4.071 19 C -0.174 4.174 20 O -0.379 6.379 21 Si 0.726 3.274 22 N -0.074 5.074 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.152 0.848 26 H 0.070 0.930 27 H 0.184 0.816 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.204 0.796 39 H 0.176 0.824 40 H 0.120 0.880 41 H 0.262 0.738 42 H -0.201 1.201 43 H -0.240 1.240 44 H 0.093 0.907 45 H 0.135 0.865 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.313 -1.523 2.356 6.908 hybrid contribution -1.194 -0.231 -0.214 1.235 sum 5.119 -1.754 2.141 5.819 Atomic orbital electron populations 1.23510 0.75267 1.05693 1.02090 1.86502 1.24610 1.32899 1.83671 1.24175 0.92934 0.80983 0.70905 1.90673 1.68042 1.37808 1.46577 1.22532 0.85561 1.01006 1.02417 1.23236 0.97674 1.00689 0.94344 1.22164 0.95790 0.89059 0.86750 1.23294 0.97682 0.94932 1.00824 1.22551 0.89199 1.04049 0.98335 1.22869 0.99748 0.95997 0.97567 1.23252 0.77603 1.00617 1.03421 1.47963 1.08267 1.44341 1.31542 1.16829 0.84830 0.79163 0.80532 1.90783 1.16431 1.65182 1.73446 1.20212 0.92695 1.09171 0.97203 1.22256 0.95017 0.99764 0.99421 1.20872 0.96276 1.07581 1.00750 1.20848 0.90916 0.98307 0.97078 1.24878 0.91610 1.06355 0.94512 1.86315 1.25688 1.76365 1.49534 0.94369 0.75402 0.74044 0.83626 1.43953 1.08975 1.34217 1.20241 1.22495 0.76721 1.04957 1.03643 0.91967 0.84779 0.92972 0.81562 0.91970 0.86936 0.88189 0.91651 0.86956 0.88169 0.89995 0.86734 0.88346 0.89422 0.79565 0.82370 0.87992 0.73762 1.20141 1.23980 0.90743 0.86469 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.36 -2.95 10.57 -51.41 -0.54 -3.49 16 3 C 0.47 5.28 7.48 71.23 0.53 5.81 16 4 O -0.54 -10.65 15.65 21.97 0.34 -10.31 16 5 C -0.10 -0.32 4.06 -10.94 -0.04 -0.36 16 6 C -0.12 -0.43 6.68 31.00 0.21 -0.22 16 7 C 0.15 0.19 1.34 4.03 0.01 0.20 16 8 C -0.13 -0.77 6.54 30.94 0.20 -0.56 16 9 C -0.10 0.80 6.08 31.64 0.19 1.00 16 10 C -0.12 1.10 7.09 32.06 0.23 1.33 16 11 C 0.07 -0.26 5.27 86.84 0.46 0.20 16 12 N -0.59 -2.77 3.17 -770.90 -2.44 -5.21 16 13 C 0.60 7.60 7.47 86.45 0.65 8.25 16 14 O -0.58 -11.40 11.74 -4.32 -0.05 -11.45 16 15 C -0.08 -0.91 6.84 40.35 0.28 -0.63 16 16 C -0.14 -0.83 9.18 22.57 0.21 -0.63 16 17 C -0.23 -1.47 9.37 22.01 0.21 -1.26 16 18 C 0.05 0.36 6.18 41.34 0.26 0.62 16 19 C -0.07 0.03 2.98 71.24 0.21 0.24 16 20 O -0.57 0.60 9.80 -148.98 -1.46 -0.86 16 21 Si 0.82 -2.63 31.22 68.60 2.14 -0.49 16 22 N -0.40 -4.65 3.16 -519.70 -1.64 -6.29 16 23 C 0.06 0.64 10.35 127.77 1.32 1.96 16 24 H 0.06 0.27 8.13 -2.38 -0.02 0.25 16 25 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H 0.05 0.33 8.13 -2.39 -0.02 0.31 16 27 H 0.17 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.06 0.76 6.54 -2.39 -0.02 0.75 16 29 H 0.11 -0.26 8.01 -2.39 -0.02 -0.28 16 30 H 0.10 0.13 8.01 -2.39 -0.02 0.12 16 31 H 0.06 1.07 5.99 -2.39 -0.01 1.06 16 32 H 0.11 -1.28 7.85 -2.39 -0.02 -1.30 16 33 H 0.10 -0.97 8.01 -2.39 -0.02 -0.99 16 34 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.11 -1.48 8.14 -2.39 -0.02 -1.50 16 36 H 0.10 -0.42 5.31 -2.38 -0.01 -0.44 16 37 H 0.09 -0.49 8.02 -2.39 -0.02 -0.50 16 38 H 0.19 -0.19 4.71 -2.91 -0.01 -0.20 16 39 H 0.16 0.41 6.69 -2.91 -0.02 0.39 16 40 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 41 H 0.41 -5.01 8.74 -74.06 -0.65 -5.65 16 42 H -0.27 -0.08 6.87 99.48 0.68 0.60 16 43 H -0.31 -2.08 7.11 99.48 0.71 -1.38 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.12 0.91 5.47 -2.39 -0.01 0.90 16 46 H 0.08 1.22 5.89 -2.38 -0.01 1.21 16 Total: 0.00 -32.25 360.93 2.84 -29.41 By element: Atomic # 1 Polarization: -8.92 SS G_CDS: 0.39 Total: -8.53 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.10 Total: 17.23 kcal Atomic # 7 Polarization: -7.42 SS G_CDS: -4.09 Total: -11.51 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.71 Total: -26.11 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.14 Total: -0.49 kcal Total: -32.25 2.84 -29.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_10803936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.139 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds