Wall clock time and date at job start Sun Mar 7 2021 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00171 * 2 1 4 4 O 1.20829 * 119.99424 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00017 * 180.02562 * 3 2 1 6 6 C 1.53905 * 113.59421 * 179.97438 * 5 3 2 7 7 C 1.53153 * 86.89019 * 139.52742 * 6 5 3 8 8 C 1.53134 * 87.73425 * 334.92381 * 7 6 5 9 9 C 1.53740 * 114.76725 * 218.56277 * 7 6 5 10 10 C 1.55295 * 102.74055 * 251.59020 * 9 7 6 11 11 C 1.55229 * 101.55141 * 324.82168 * 10 9 7 12 12 N 1.46379 * 115.35585 * 92.05236 * 7 6 5 13 13 C 1.34773 * 125.80431 * 311.11207 * 12 7 6 14 14 O 1.21566 * 119.99642 * 7.78020 * 13 12 7 15 15 C 1.47693 * 120.00312 * 187.77899 * 13 12 7 16 16 C 1.39827 * 120.16625 * 190.02334 * 15 13 12 17 17 F 1.35096 * 120.11149 * 359.95515 * 16 15 13 18 18 C 1.38318 * 119.77508 * 179.97438 * 16 15 13 19 19 C 1.38207 * 120.12119 * 359.72405 * 18 16 15 20 20 C 1.38457 * 120.33720 * 0.55168 * 19 18 16 21 21 C 1.50701 * 119.89016 * 179.71749 * 20 19 18 22 22 O 1.42908 * 109.46570 * 119.72792 * 21 20 19 23 23 Si 1.86294 * 109.47213 * 359.73262 * 21 20 19 24 24 C 1.37856 * 120.21907 * 359.44952 * 20 19 18 25 25 H 1.08995 * 109.47586 * 300.00213 * 1 2 3 26 26 H 1.09008 * 109.47156 * 60.00702 * 1 2 3 27 27 H 1.09001 * 109.47280 * 180.02562 * 1 2 3 28 28 H 1.08997 * 112.84151 * 48.85344 * 5 3 2 29 29 H 1.09002 * 113.64325 * 25.02898 * 6 5 3 30 30 H 1.09000 * 113.72329 * 254.04152 * 6 5 3 31 31 H 1.09005 * 113.64085 * 139.57720 * 8 7 6 32 32 H 1.08996 * 113.64438 * 270.57232 * 8 7 6 33 33 H 1.09004 * 110.75316 * 9.90284 * 9 7 6 34 34 H 1.09000 * 110.75933 * 133.08287 * 9 7 6 35 35 H 1.08999 * 110.98874 * 83.10565 * 10 9 7 36 36 H 1.09002 * 110.99105 * 206.88586 * 10 9 7 37 37 H 1.09001 * 110.50991 * 278.16623 * 11 10 9 38 38 H 1.08996 * 110.33443 * 155.77515 * 11 10 9 39 39 H 1.08002 * 119.93809 * 180.02562 * 18 16 15 40 40 H 1.08001 * 119.83075 * 180.29412 * 19 18 16 41 41 H 1.08999 * 109.47129 * 239.72729 * 21 20 19 42 42 H 0.96698 * 114.00082 * 299.99981 * 22 21 20 43 43 H 1.48501 * 110.00286 * 58.67562 * 23 21 20 44 44 H 1.48498 * 110.00083 * 179.97438 * 23 21 20 45 45 H 1.07999 * 120.06263 * 180.25517 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.1077 2.7155 -0.0011 7 6 5.1678 2.2288 0.9912 8 6 4.1917 1.1209 1.3971 9 6 5.5107 3.2274 2.1087 10 6 6.9344 3.7066 1.7147 11 6 7.5422 2.4121 1.1112 12 7 6.4230 1.7710 0.3932 13 6 6.5376 0.9067 -0.6345 14 8 5.5463 0.5454 -1.2382 15 6 7.8676 0.3986 -1.0273 16 6 8.0206 -0.3269 -2.2128 17 9 6.9517 -0.5667 -3.0034 18 6 9.2700 -0.7986 -2.5731 19 6 10.3645 -0.5488 -1.7671 20 6 10.2176 0.1642 -0.5893 21 6 11.4169 0.4252 0.2851 22 8 11.6129 1.8347 0.4163 23 14 12.9281 -0.3425 -0.4879 24 6 8.9789 0.6408 -0.2167 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 4.0231 0.6371 -0.7573 29 1 3.4147 3.4431 0.4214 30 1 4.5184 3.0293 -0.9608 31 1 4.6697 0.1545 1.5581 32 1 3.5222 1.4041 2.2093 33 1 4.8089 4.0614 2.1102 34 1 5.5215 2.7320 3.0796 35 1 6.8866 4.5031 0.9722 36 1 7.4953 4.0272 2.5926 37 1 7.9097 1.7580 1.9020 38 1 8.3461 2.6587 0.4177 39 1 9.3912 -1.3589 -3.4884 40 1 11.3388 -0.9152 -2.0553 41 1 11.2506 -0.0117 1.2698 42 1 11.7669 2.2902 -0.4227 43 1 13.1473 0.2218 -1.8440 44 1 14.1178 -0.0915 0.3645 45 1 8.8679 1.2001 0.7004 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_12335834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:33:06 Heat of formation + Delta-G solvation = -88.656788 kcal Electronic energy + Delta-G solvation = -32407.086861 eV Core-core repulsion = 27887.779343 eV Total energy + Delta-G solvation = -4519.307518 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.141 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -50.01464 -42.77280 -41.42026 -40.47224 -39.01466 -37.77262 -37.55361 -36.80003 -33.42022 -32.37534 -31.90894 -29.82856 -28.32596 -27.03519 -26.61576 -26.16445 -24.86963 -23.69453 -23.26068 -21.62491 -21.49539 -19.46964 -19.17813 -18.50689 -18.41725 -18.24114 -17.65630 -17.41698 -17.36118 -17.21457 -16.78209 -16.45580 -16.15891 -16.05063 -15.69311 -15.54414 -15.18349 -14.86323 -14.65489 -14.60533 -14.43570 -14.20491 -14.04783 -13.73134 -13.57990 -13.44416 -13.27789 -13.18864 -12.99336 -12.84265 -12.65623 -12.29189 -12.11187 -11.96933 -11.91043 -11.79453 -11.51549 -11.40647 -11.21516 -10.78049 -10.50227 -10.31195 -9.93577 -9.72874 -4.86097 -0.50210 -0.01462 1.03373 1.33041 1.52138 1.62854 1.64911 1.74018 2.03238 2.43380 3.02789 3.06002 3.27725 3.31889 3.41358 3.50534 3.52936 3.53607 3.65457 3.72436 3.91572 3.98747 4.09135 4.12076 4.16279 4.21067 4.22616 4.34984 4.48982 4.49832 4.54401 4.59941 4.63600 4.66107 4.70894 4.79181 4.81309 4.86653 4.90817 4.96337 4.98516 5.08159 5.14900 5.20429 5.26022 5.30314 5.38869 5.62257 6.25330 6.53260 6.62232 7.02658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.542 6.542 5 C -0.153 4.153 6 C -0.115 4.115 7 C 0.148 3.852 8 C -0.113 4.113 9 C -0.112 4.112 10 C -0.128 4.128 11 C 0.080 3.920 12 N -0.589 5.589 13 C 0.569 3.431 14 O -0.548 6.548 15 C -0.185 4.185 16 C 0.136 3.864 17 F -0.136 7.136 18 C -0.155 4.155 19 C -0.052 4.052 20 C -0.132 4.132 21 C -0.071 4.071 22 O -0.541 6.541 23 Si 0.755 3.245 24 C -0.052 4.052 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.129 0.871 28 H 0.171 0.829 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.165 0.835 40 H 0.166 0.834 41 H 0.138 0.862 42 H 0.388 0.612 43 H -0.280 1.280 44 H -0.305 1.305 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 -1.515 4.468 9.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.433 6.433 5 C -0.171 4.171 6 C -0.153 4.153 7 C 0.062 3.938 8 C -0.151 4.151 9 C -0.150 4.150 10 C -0.165 4.165 11 C -0.040 4.040 12 N -0.320 5.320 13 C 0.361 3.639 14 O -0.429 6.429 15 C -0.189 4.189 16 C 0.115 3.885 17 F -0.115 7.115 18 C -0.173 4.173 19 C -0.069 4.069 20 C -0.132 4.132 21 C -0.181 4.181 22 O -0.349 6.349 23 Si 0.661 3.339 24 C -0.070 4.070 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.147 0.853 28 H 0.187 0.813 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.156 0.844 42 H 0.237 0.763 43 H -0.206 1.206 44 H -0.233 1.233 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 7.907 -1.476 4.359 9.149 hybrid contribution -1.230 1.061 -1.043 1.930 sum 6.678 -0.415 3.316 7.467 Atomic orbital electron populations 1.23531 0.75161 1.05597 1.02425 1.86544 1.24800 1.33436 1.83552 1.24364 0.92777 0.80875 0.70561 1.90607 1.68027 1.37274 1.47367 1.24040 0.85506 1.03063 1.04476 1.23141 0.97355 0.94619 1.00221 1.21472 0.83743 0.94832 0.93729 1.23163 0.97502 1.00071 0.94369 1.22567 0.98224 0.97553 0.96685 1.22932 0.95262 0.95900 1.02438 1.23271 0.89076 0.94836 0.96846 1.48066 1.08356 1.43431 1.32103 1.18113 0.88493 0.78104 0.79196 1.90311 1.38053 1.60759 1.53818 1.19919 0.94624 1.06496 0.97860 1.18175 0.84554 0.97003 0.88748 1.91560 1.55232 1.92001 1.72661 1.21367 0.89771 1.02904 1.03281 1.21405 0.99147 0.94257 0.92132 1.20454 0.95898 1.00224 0.96653 1.25107 1.01511 0.86010 1.05463 1.86590 1.93121 1.18459 1.36721 0.94158 0.73953 0.89868 0.75920 1.22294 0.89595 0.95321 0.99792 0.91670 0.92370 0.85298 0.81292 0.88003 0.91977 0.90091 0.87526 0.88966 0.88073 0.90606 0.86862 0.87854 0.88290 0.81747 0.81755 0.84403 0.76258 1.20593 1.23329 0.80235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.37 -4.10 10.57 -51.44 -0.54 -4.64 16 3 C 0.47 6.05 7.48 71.23 0.53 6.58 16 4 O -0.54 -9.27 15.64 21.96 0.34 -8.93 16 5 C -0.15 -1.44 3.61 -10.94 -0.04 -1.48 16 6 C -0.11 -0.74 6.36 30.95 0.20 -0.54 16 7 C 0.15 0.09 1.44 3.97 0.01 0.09 16 8 C -0.11 -0.33 6.84 30.94 0.21 -0.12 16 9 C -0.11 0.67 6.30 31.63 0.20 0.87 16 10 C -0.13 1.10 7.10 32.15 0.23 1.33 16 11 C 0.08 -0.58 4.91 86.93 0.43 -0.15 16 12 N -0.59 -0.20 3.17 -769.62 -2.44 -2.63 16 13 C 0.57 3.55 7.49 86.74 0.65 4.20 16 14 O -0.55 -7.35 10.99 -3.93 -0.04 -7.39 16 15 C -0.19 -0.44 5.85 -20.05 -0.12 -0.55 16 16 C 0.14 0.56 7.27 22.67 0.16 0.72 16 17 F -0.14 -1.48 15.61 44.97 0.70 -0.78 16 18 C -0.15 0.45 10.01 22.28 0.22 0.67 16 19 C -0.05 0.37 8.66 22.31 0.19 0.56 16 20 C -0.13 0.90 5.38 -19.90 -0.11 0.79 16 21 C -0.07 0.62 2.82 71.24 0.20 0.82 16 22 O -0.54 3.46 12.76 -148.98 -1.90 1.56 16 23 Si 0.76 -6.07 29.78 68.60 2.04 -4.03 16 24 C -0.05 0.23 7.85 22.52 0.18 0.41 16 25 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 26 H 0.06 0.32 8.13 -2.38 -0.02 0.30 16 27 H 0.13 -0.18 8.14 -2.39 -0.02 -0.20 16 28 H 0.17 2.37 4.14 -75.81 -0.31 2.06 16 29 H 0.10 0.67 7.21 -2.39 -0.02 0.65 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.11 0.06 8.08 -2.39 -0.02 0.05 16 33 H 0.09 -0.54 7.79 -2.38 -0.02 -0.56 16 34 H 0.10 -0.88 8.11 -2.39 -0.02 -0.89 16 35 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 36 H 0.11 -1.42 8.14 -2.39 -0.02 -1.44 16 37 H 0.10 -1.14 7.21 -2.39 -0.02 -1.16 16 38 H 0.10 -0.83 6.20 -2.39 -0.01 -0.84 16 39 H 0.16 -1.09 8.06 -2.91 -0.02 -1.12 16 40 H 0.17 -2.00 4.86 -2.91 -0.01 -2.01 16 41 H 0.14 -1.54 7.96 -2.39 -0.02 -1.56 16 42 H 0.39 -4.32 8.70 -74.06 -0.64 -4.97 16 43 H -0.28 1.18 7.10 99.48 0.71 1.89 16 44 H -0.31 -0.27 7.11 99.48 0.71 0.43 16 45 H 0.18 -1.48 3.43 -2.91 -0.01 -1.49 16 Total: 0.00 -24.33 361.38 2.65 -21.68 By element: Atomic # 1 Polarization: -10.49 SS G_CDS: 0.15 Total: -10.35 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 4.34 Total: 15.52 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -2.44 Total: -2.63 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -2.14 Total: -19.41 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.70 Total: -0.78 kcal Atomic # 14 Polarization: -6.07 SS G_CDS: 2.04 Total: -4.03 kcal Total: -24.33 2.65 -21.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_12335834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.979 kcal (2) G-P(sol) polarization free energy of solvation -24.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds