Wall clock time and date at job start Sun Mar 7 2021 03:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99958 * 2 1 4 4 O 1.20824 * 120.00330 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99629 * 180.02562 * 3 2 1 6 6 C 1.53904 * 113.59245 * 179.97438 * 5 3 2 7 7 C 1.53139 * 86.89178 * 139.53691 * 6 5 3 8 8 C 1.53148 * 87.73184 * 334.91829 * 7 6 5 9 9 C 1.53751 * 114.90647 * 218.68246 * 7 6 5 10 10 C 1.55304 * 102.82465 * 208.23434 * 9 7 6 11 11 C 1.54951 * 101.66873 * 34.75101 * 10 9 7 12 12 N 1.46373 * 115.38124 * 92.02590 * 7 6 5 13 13 C 1.34780 * 125.80143 * 308.71833 * 12 7 6 14 14 O 1.21568 * 119.99679 * 4.86336 * 13 12 7 15 15 C 1.47722 * 120.00116 * 184.86437 * 13 12 7 16 16 C 1.39707 * 120.02324 * 151.90681 * 15 13 12 17 17 C 1.37663 * 119.97449 * 179.97438 * 16 15 13 18 18 C 1.39508 * 120.02660 * 0.02562 * 17 16 15 19 19 C 1.48272 * 119.97492 * 180.02562 * 18 17 16 20 20 C 1.39396 * 120.13148 * 359.72621 * 19 18 17 21 21 C 1.38000 * 119.87549 * 179.78867 * 20 19 18 22 22 C 1.38336 * 120.12192 * 0.48803 * 21 20 19 23 23 C 1.50703 * 119.87074 * 179.71906 * 22 21 20 24 24 O 1.42898 * 109.47547 * 245.02171 * 23 22 21 25 25 Si 1.86302 * 109.47055 * 5.02340 * 23 22 21 26 26 C 1.38330 * 120.25880 * 359.74379 * 22 21 20 27 27 C 1.37995 * 120.12899 * 0.02562 * 26 22 21 28 28 C 1.39501 * 120.04414 * 359.97438 * 18 17 16 29 29 C 1.37670 * 120.02986 * 359.97438 * 28 18 17 30 30 H 1.08996 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47187 * 300.00358 * 1 2 3 32 32 H 1.09004 * 109.46745 * 59.99974 * 1 2 3 33 33 H 1.08991 * 112.83688 * 48.85847 * 5 3 2 34 34 H 1.08994 * 113.64273 * 25.03584 * 6 5 3 35 35 H 1.08993 * 113.72087 * 254.04828 * 6 5 3 36 36 H 1.09001 * 113.64307 * 139.58210 * 8 7 6 37 37 H 1.09005 * 113.64532 * 270.57784 * 8 7 6 38 38 H 1.09001 * 110.91237 * 89.79833 * 9 7 6 39 39 H 1.09000 * 110.52364 * 326.48215 * 9 7 6 40 40 H 1.09008 * 110.98428 * 276.65461 * 10 9 7 41 41 H 1.09000 * 110.99069 * 152.85181 * 10 9 7 42 42 H 1.09005 * 110.36625 * 204.48097 * 11 10 9 43 43 H 1.09007 * 110.45539 * 82.21787 * 11 10 9 44 44 H 1.07999 * 120.00923 * 0.25729 * 16 15 13 45 45 H 1.07999 * 119.98531 * 179.97438 * 17 16 15 46 46 H 1.08008 * 120.06019 * 0.02562 * 20 19 18 47 47 H 1.07997 * 119.94300 * 180.22598 * 21 20 19 48 48 H 1.08995 * 109.46960 * 125.02060 * 23 22 21 49 49 H 0.96701 * 113.99540 * 59.99593 * 24 23 22 50 50 H 1.48501 * 110.00025 * 179.97438 * 25 23 22 51 51 H 1.48500 * 110.00053 * 301.31833 * 25 23 22 52 52 H 1.08002 * 119.93819 * 180.02562 * 26 22 21 53 53 H 1.07999 * 120.06980 * 179.97438 * 27 26 22 54 54 H 1.08006 * 119.98468 * 179.97438 * 28 18 17 55 55 H 1.07998 * 120.01202 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1078 2.7154 -0.0011 7 6 5.1680 2.2287 0.9909 8 6 4.1918 1.1207 1.3971 9 6 5.5115 3.2237 2.1116 10 6 6.9826 2.8626 2.4542 11 6 7.5396 2.4650 1.0641 12 7 6.4231 1.7703 0.3933 13 6 6.5393 0.8711 -0.6040 14 8 5.5434 0.4319 -1.1454 15 6 7.8768 0.4194 -1.0391 16 6 8.0385 -0.8519 -1.5953 17 6 9.2853 -1.2716 -2.0009 18 6 10.3871 -0.4282 -1.8563 19 6 11.7293 -0.8812 -2.2940 20 6 11.8940 -2.1511 -2.8450 21 6 13.1449 -2.5656 -3.2547 22 6 14.2359 -1.7275 -3.1102 23 6 15.6004 -2.1885 -3.5537 24 8 16.4595 -2.2969 -2.4170 25 14 15.4553 -3.8504 -4.3832 26 6 14.0794 -0.4682 -2.5597 27 6 12.8325 -0.0411 -2.1508 28 6 10.2267 0.8414 -1.3010 29 6 8.9806 1.2637 -0.8956 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 4.0231 0.6370 -0.7574 34 1 3.4149 3.4429 0.4215 35 1 4.5184 3.0291 -0.9608 36 1 4.6697 0.1544 1.5581 37 1 3.5223 1.4041 2.2093 38 1 4.8653 3.0738 2.9765 39 1 5.4401 4.2487 1.7477 40 1 7.0270 2.0226 3.1476 41 1 7.5134 3.7262 2.8551 42 1 8.3918 1.7943 1.1746 43 1 7.8271 3.3527 0.5007 44 1 7.1850 -1.5034 -1.7112 45 1 9.4106 -2.2545 -2.4305 46 1 11.0435 -2.8077 -2.9546 47 1 13.2731 -3.5478 -3.6851 48 1 16.0170 -1.4669 -4.2564 49 1 16.1500 -2.9233 -1.7485 50 1 16.7942 -4.3158 -4.8258 51 1 14.8589 -4.8356 -3.4457 52 1 14.9347 0.1821 -2.4497 53 1 12.7115 0.9422 -1.7207 54 1 11.0804 1.4934 -1.1891 55 1 8.8568 2.2465 -0.4654 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_13158362.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:34:18 Heat of formation + Delta-G solvation = -25.353910 kcal Electronic energy + Delta-G solvation = -38189.108210 eV Core-core repulsion = 33318.019886 eV Total energy + Delta-G solvation = -4871.088324 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.182 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.72730 -41.41827 -40.92481 -39.85957 -38.75177 -37.76232 -37.62664 -36.72449 -34.05905 -32.92951 -32.43538 -31.59614 -30.69534 -29.76708 -28.22726 -27.11493 -26.99342 -25.51838 -24.70770 -24.49521 -23.31631 -22.79449 -22.17099 -21.59846 -21.40211 -19.47280 -19.02606 -18.71473 -18.19147 -17.99337 -17.64505 -17.40709 -17.26762 -16.92941 -16.54718 -16.28852 -16.19776 -16.03210 -15.52684 -15.49849 -15.25194 -15.05900 -14.92134 -14.84247 -14.44775 -14.39917 -14.31213 -14.27416 -14.10968 -13.96192 -13.73357 -13.55912 -13.51592 -13.22042 -13.14177 -12.91437 -12.80562 -12.62765 -12.60729 -12.12250 -12.06592 -11.99361 -11.90265 -11.87111 -11.64790 -11.49742 -11.40825 -11.19352 -10.77236 -10.59315 -10.44533 -10.03110 -9.93509 -9.81408 -9.05356 -4.92561 -0.65017 0.36843 0.42508 0.52910 1.06186 1.30695 1.58357 1.62283 1.74850 1.76972 1.95006 2.55997 2.99886 3.12687 3.34559 3.38084 3.41641 3.48872 3.55673 3.60442 3.67378 3.73900 3.79519 3.88860 3.95034 4.03549 4.07824 4.14431 4.18470 4.22272 4.24575 4.28079 4.30691 4.38767 4.41400 4.54754 4.56002 4.58495 4.61327 4.66529 4.67646 4.71132 4.74001 4.88477 4.90873 4.91451 4.93825 4.99674 5.08800 5.10670 5.14526 5.19670 5.24161 5.26996 5.31022 5.36116 5.41494 5.46902 5.51866 5.67848 5.82200 5.95303 6.34183 6.47382 6.64591 7.12295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.543 6.543 5 C -0.156 4.156 6 C -0.116 4.116 7 C 0.147 3.853 8 C -0.113 4.113 9 C -0.114 4.114 10 C -0.127 4.127 11 C 0.082 3.918 12 N -0.589 5.589 13 C 0.573 3.427 14 O -0.555 6.555 15 C -0.144 4.144 16 C -0.069 4.069 17 C -0.121 4.121 18 C -0.024 4.024 19 C -0.059 4.059 20 C -0.108 4.108 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.082 4.082 24 O -0.548 6.548 25 Si 0.762 3.238 26 C -0.101 4.101 27 C -0.108 4.108 28 C -0.119 4.119 29 C -0.090 4.090 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.178 0.822 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.142 0.858 48 H 0.125 0.875 49 H 0.386 0.614 50 H -0.306 1.306 51 H -0.282 1.282 52 H 0.133 0.867 53 H 0.147 0.853 54 H 0.155 0.845 55 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 1.112 2.675 5.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.313 3.687 4 O -0.433 6.433 5 C -0.173 4.173 6 C -0.154 4.154 7 C 0.061 3.939 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.165 4.165 11 C -0.039 4.039 12 N -0.320 5.320 13 C 0.365 3.635 14 O -0.437 6.437 15 C -0.147 4.147 16 C -0.088 4.088 17 C -0.139 4.139 18 C -0.024 4.024 19 C -0.059 4.059 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.191 4.191 24 O -0.356 6.356 25 Si 0.668 3.332 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.136 4.136 29 C -0.108 4.108 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.159 0.841 48 H 0.143 0.857 49 H 0.235 0.765 50 H -0.234 1.234 51 H -0.209 1.209 52 H 0.151 0.849 53 H 0.164 0.836 54 H 0.173 0.827 55 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.365 0.729 2.034 4.870 hybrid contribution -0.480 -0.231 0.862 1.014 sum 3.884 0.498 2.896 4.871 Atomic orbital electron populations 1.23529 0.75208 1.05584 1.02410 1.86544 1.24757 1.33496 1.83566 1.24419 0.92857 0.80843 0.70551 1.90608 1.68070 1.37272 1.47384 1.24174 0.85364 1.03125 1.04634 1.23131 0.97363 0.94640 1.00293 1.21450 0.83925 0.94743 0.93769 1.23148 0.97503 1.00070 0.94450 1.22561 0.98074 0.98245 0.96276 1.22876 0.94772 1.03410 0.95447 1.23138 0.89483 0.97542 0.93716 1.48141 1.08284 1.40872 1.34688 1.18383 0.89073 0.77574 0.78445 1.90195 1.37998 1.58933 1.56588 1.19827 0.92492 0.96970 1.05431 1.21207 0.97968 0.94753 0.94892 1.21373 0.91239 1.00888 1.00405 1.19140 0.92146 0.94408 0.96714 1.18941 0.92186 0.94810 0.99920 1.21465 0.97977 0.95530 0.97551 1.21166 0.92498 1.00004 1.00259 1.20437 0.95456 0.95380 1.00373 1.25195 0.88816 1.12721 0.92346 1.86579 1.50346 1.66447 1.32222 0.94062 0.80432 0.73254 0.85468 1.21113 0.97612 0.95626 0.97534 1.21523 0.91599 1.00347 0.99050 1.21470 0.98174 0.95539 0.98428 1.21950 0.91067 1.00534 0.97203 0.85310 0.91797 0.92284 0.80602 0.88092 0.91425 0.90493 0.87952 0.88709 0.88946 0.90229 0.87116 0.88207 0.88575 0.85211 0.83465 0.83729 0.84097 0.85688 0.76501 1.23400 1.20862 0.84946 0.83579 0.82737 0.81991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 10.56 113.37 1.20 1.30 16 2 O -0.37 -3.80 10.57 -51.34 -0.54 -4.34 16 3 C 0.47 5.59 7.48 71.24 0.53 6.12 16 4 O -0.54 -8.81 15.64 21.97 0.34 -8.47 16 5 C -0.16 -1.28 3.61 -10.93 -0.04 -1.31 16 6 C -0.12 -0.58 6.51 30.95 0.20 -0.37 16 7 C 0.15 -0.02 1.44 3.98 0.01 -0.01 16 8 C -0.11 -0.32 6.72 30.94 0.21 -0.11 16 9 C -0.11 0.71 6.30 31.64 0.20 0.91 16 10 C -0.13 1.23 7.09 32.05 0.23 1.46 16 11 C 0.08 -0.66 5.05 86.83 0.44 -0.22 16 12 N -0.59 0.43 3.17 -770.09 -2.44 -2.00 16 13 C 0.57 2.45 7.35 86.75 0.64 3.09 16 14 O -0.56 -5.87 12.22 -3.93 -0.05 -5.92 16 15 C -0.14 -0.17 5.71 -20.06 -0.11 -0.29 16 16 C -0.07 -0.11 9.58 22.49 0.22 0.11 16 17 C -0.12 0.14 9.41 22.44 0.21 0.35 16 18 C -0.02 0.04 5.88 -20.00 -0.12 -0.08 16 19 C -0.06 0.10 5.88 -20.05 -0.12 -0.01 16 20 C -0.11 0.29 9.43 22.49 0.21 0.50 16 21 C -0.12 0.35 8.65 22.24 0.19 0.55 16 22 C -0.12 0.22 5.36 -19.82 -0.11 0.11 16 23 C -0.08 0.16 2.80 71.24 0.20 0.36 16 24 O -0.55 -0.68 12.83 -148.98 -1.91 -2.60 16 25 Si 0.76 -2.12 29.87 68.60 2.05 -0.07 16 26 C -0.10 0.18 9.67 22.23 0.21 0.40 16 27 C -0.11 0.32 9.43 22.49 0.21 0.53 16 28 C -0.12 0.52 9.41 22.44 0.21 0.73 16 29 C -0.09 0.35 7.91 22.49 0.18 0.53 16 30 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.06 0.23 8.13 -2.39 -0.02 0.21 16 32 H 0.06 0.28 8.13 -2.38 -0.02 0.26 16 33 H 0.18 2.11 4.07 -81.82 -0.33 1.77 16 34 H 0.10 0.55 7.41 -2.39 -0.02 0.53 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.10 0.09 7.88 -2.38 -0.02 0.07 16 38 H 0.09 -0.67 7.79 -2.39 -0.02 -0.69 16 39 H 0.09 -0.67 8.10 -2.39 -0.02 -0.69 16 40 H 0.08 -0.71 8.14 -2.38 -0.02 -0.73 16 41 H 0.11 -1.47 8.14 -2.39 -0.02 -1.49 16 42 H 0.10 -0.97 6.10 -2.38 -0.01 -0.98 16 43 H 0.10 -1.08 7.34 -2.38 -0.02 -1.10 16 44 H 0.13 0.30 7.88 -2.91 -0.02 0.27 16 45 H 0.15 -0.72 6.19 -2.91 -0.02 -0.74 16 46 H 0.15 -0.90 6.19 -2.91 -0.02 -0.92 16 47 H 0.14 -0.84 4.82 -2.91 -0.01 -0.85 16 48 H 0.13 -0.44 7.96 -2.39 -0.02 -0.46 16 49 H 0.39 -1.60 8.70 -74.06 -0.64 -2.25 16 50 H -0.31 -1.65 7.11 99.48 0.71 -0.95 16 51 H -0.28 -0.21 7.00 99.48 0.70 0.49 16 52 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 53 H 0.15 -1.07 6.19 -2.91 -0.02 -1.09 16 54 H 0.16 -1.43 6.19 -2.91 -0.02 -1.44 16 55 H 0.16 -1.45 4.59 -2.91 -0.01 -1.47 16 Total: 0.00 -23.46 432.08 2.47 -20.99 By element: Atomic # 1 Polarization: -12.25 SS G_CDS: 0.02 Total: -12.23 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.00 Total: 14.64 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -2.44 Total: -2.00 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -2.16 Total: -21.32 kcal Atomic # 14 Polarization: -2.12 SS G_CDS: 2.05 Total: -0.07 kcal Total: -23.46 2.47 -20.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13158362.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.363 kcal (2) G-P(sol) polarization free energy of solvation -23.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds