Wall clock time and date at job start Sun Mar 7 2021 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34220 * 116.99918 * 2 1 4 4 O 1.20820 * 120.00360 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99612 * 180.02562 * 3 2 1 6 6 C 1.53902 * 113.59250 * 180.02562 * 5 3 2 7 7 C 1.53140 * 86.89413 * 139.53741 * 6 5 3 8 8 C 1.53145 * 87.73217 * 334.91793 * 7 6 5 9 9 C 1.53753 * 114.90583 * 218.68062 * 7 6 5 10 10 C 1.55302 * 102.82179 * 208.22934 * 9 7 6 11 11 C 1.54959 * 101.66752 * 34.75722 * 10 9 7 12 12 N 1.46372 * 115.38105 * 92.02464 * 7 6 5 13 13 C 1.34786 * 125.80186 * 308.71988 * 12 7 6 14 14 O 1.21575 * 119.99517 * 4.88152 * 13 12 7 15 15 C 1.47653 * 120.00200 * 184.88100 * 13 12 7 16 16 C 1.40167 * 119.97224 * 331.58478 * 15 13 12 17 17 C 1.36363 * 120.66751 * 179.64295 * 16 15 13 18 18 C 1.39330 * 120.23661 * 0.60376 * 17 16 15 19 19 N 1.37400 * 133.25675 * 179.27097 * 18 17 16 20 20 C 1.36861 * 109.98027 * 180.02562 * 19 18 17 21 21 C 1.34196 * 109.96668 * 0.02562 * 20 19 18 22 22 C 1.50700 * 126.53773 * 179.97438 * 21 20 19 23 23 O 1.42894 * 109.47679 * 105.02302 * 22 21 20 24 24 Si 1.86299 * 109.47303 * 345.01742 * 22 21 20 25 25 C 1.40912 * 119.63397 * 359.55302 * 18 17 16 26 26 C 1.39187 * 119.97250 * 151.61171 * 15 13 12 27 27 H 1.08998 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46808 * 300.00042 * 1 2 3 29 29 H 1.08994 * 109.47377 * 59.99449 * 1 2 3 30 30 H 1.08992 * 112.83546 * 48.86229 * 5 3 2 31 31 H 1.08996 * 113.64543 * 25.03631 * 6 5 3 32 32 H 1.09001 * 113.72203 * 254.04768 * 6 5 3 33 33 H 1.08999 * 113.64786 * 139.58079 * 8 7 6 34 34 H 1.08997 * 113.64626 * 270.58172 * 8 7 6 35 35 H 1.09001 * 110.90835 * 89.80387 * 9 7 6 36 36 H 1.08992 * 110.68429 * 326.55486 * 9 7 6 37 37 H 1.09004 * 110.99239 * 276.65719 * 10 9 7 38 38 H 1.09004 * 110.98806 * 152.85283 * 10 9 7 39 39 H 1.09007 * 110.35998 * 204.47656 * 11 10 9 40 40 H 1.08996 * 110.45473 * 82.21476 * 11 10 9 41 41 H 1.08002 * 119.66839 * 0.04080 * 16 15 13 42 42 H 1.07995 * 119.87825 * 179.91595 * 17 16 15 43 43 H 0.97001 * 125.00917 * 359.97438 * 19 18 17 44 44 H 1.08004 * 125.01759 * 180.02562 * 20 19 18 45 45 H 1.09007 * 109.46486 * 225.02277 * 22 21 20 46 46 H 0.96690 * 114.00461 * 179.97438 * 23 22 21 47 47 H 1.48501 * 110.00164 * 298.68754 * 24 22 21 48 48 H 1.48508 * 109.99784 * 60.00613 * 24 22 21 49 49 H 1.08002 * 120.30404 * 359.97438 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.1078 2.7154 0.0001 7 6 5.1681 2.2278 0.9917 8 6 4.1919 1.1195 1.3969 9 6 5.5116 3.2219 2.1132 10 6 6.9827 2.8605 2.4555 11 6 7.5397 2.4640 1.0648 12 7 6.4231 1.7700 0.3936 13 6 6.5393 0.8717 -0.6046 14 8 5.5433 0.4331 -1.1465 15 6 7.8761 0.4203 -1.0397 16 6 8.9820 1.2700 -0.8996 17 6 10.2242 0.8649 -1.2900 18 6 10.4072 -0.3992 -1.8468 19 7 11.5072 -1.0635 -2.3332 20 6 11.1447 -2.3065 -2.7765 21 6 9.8272 -2.4901 -2.5989 22 6 9.0369 -3.7225 -2.9562 23 8 8.7239 -4.4493 -1.7664 24 14 10.0455 -4.7988 -4.0941 25 6 9.3028 -1.2614 -1.9958 26 6 8.0369 -0.8484 -1.5892 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0230 0.6371 -0.7574 31 1 3.4149 3.4425 0.4234 32 1 4.5184 3.0300 -0.9593 33 1 4.6698 0.1530 1.5571 34 1 3.5225 1.4021 2.2094 35 1 4.8655 3.0712 2.9780 36 1 5.4397 4.2482 1.7533 37 1 7.0272 2.0199 3.1480 38 1 7.5135 3.7237 2.8571 39 1 8.3919 1.7933 1.1748 40 1 7.8271 3.3523 0.5023 41 1 8.8502 2.2530 -0.4722 42 1 11.0672 1.5305 -1.1775 43 1 12.4079 -0.7041 -2.3592 44 1 11.8192 -3.0325 -3.2059 45 1 8.1138 -3.4296 -3.4566 46 1 8.2144 -5.2564 -1.9210 47 1 10.3506 -4.0655 -5.3489 48 1 11.3068 -5.2049 -3.4236 49 1 7.1875 -1.5064 -1.6990 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_13287722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:34:37 Heat of formation + Delta-G solvation = -20.904154 kcal Electronic energy + Delta-G solvation = -34505.022961 eV Core-core repulsion = 29980.691583 eV Total energy + Delta-G solvation = -4524.331379 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.161 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.79770 -42.39651 -41.24647 -39.34739 -38.00037 -37.69062 -37.51027 -36.50478 -33.47819 -32.88452 -30.90277 -30.60830 -29.69824 -28.19652 -26.99379 -26.48049 -25.74084 -24.87015 -23.77477 -22.94154 -21.98358 -21.47325 -20.61425 -19.37418 -19.03956 -18.91199 -18.36447 -18.27941 -17.82879 -17.43697 -17.29253 -16.86140 -16.55124 -16.19352 -15.78840 -15.53869 -15.43958 -15.12110 -15.03859 -14.91212 -14.82313 -14.60974 -14.38157 -14.26415 -14.09412 -13.82669 -13.65614 -13.54408 -13.48982 -13.14947 -12.91238 -12.77930 -12.74226 -12.59584 -12.15862 -12.01338 -11.96731 -11.88938 -11.83626 -11.65501 -11.41053 -11.17640 -10.88276 -10.48496 -10.19716 -9.82063 -9.41365 -8.90444 -4.92654 -0.19605 0.12604 1.07031 1.33910 1.35236 1.62159 1.71960 1.76390 1.78701 1.95256 1.98803 2.74526 3.15626 3.37162 3.40334 3.52253 3.54719 3.61932 3.62862 3.68131 3.77351 3.94280 4.02254 4.08892 4.16087 4.17859 4.20625 4.23116 4.25682 4.34952 4.38684 4.48960 4.51461 4.56244 4.60885 4.62035 4.69374 4.73675 4.75945 4.90680 4.92301 4.93338 5.00800 5.10947 5.17342 5.20342 5.27820 5.32213 5.35026 5.39913 5.47216 5.51015 5.88923 6.36920 6.43449 6.65671 6.95344 7.16092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.543 6.543 5 C -0.156 4.156 6 C -0.115 4.115 7 C 0.148 3.852 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.127 4.127 11 C 0.082 3.918 12 N -0.590 5.590 13 C 0.579 3.421 14 O -0.558 6.558 15 C -0.169 4.169 16 C -0.077 4.077 17 C -0.125 4.125 18 C 0.109 3.891 19 N -0.574 5.574 20 C 0.056 3.944 21 C -0.179 4.179 22 C -0.057 4.057 23 O -0.568 6.568 24 Si 0.786 3.214 25 C -0.128 4.128 26 C -0.014 4.014 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.177 0.823 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.170 0.830 42 H 0.162 0.838 43 H 0.437 0.563 44 H 0.186 0.814 45 H 0.071 0.929 46 H 0.399 0.601 47 H -0.289 1.289 48 H -0.280 1.280 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -0.571 2.031 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.314 3.686 4 O -0.433 6.433 5 C -0.173 4.173 6 C -0.153 4.153 7 C 0.062 3.938 8 C -0.153 4.153 9 C -0.151 4.151 10 C -0.165 4.165 11 C -0.039 4.039 12 N -0.321 5.321 13 C 0.372 3.628 14 O -0.440 6.440 15 C -0.173 4.173 16 C -0.096 4.096 17 C -0.146 4.146 18 C 0.000 4.000 19 N -0.178 5.178 20 C -0.071 4.071 21 C -0.186 4.186 22 C -0.166 4.166 23 O -0.378 6.378 24 Si 0.689 3.311 25 C -0.133 4.133 26 C -0.034 4.034 27 H 0.147 0.853 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.192 0.808 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.187 0.813 42 H 0.179 0.821 43 H 0.278 0.722 44 H 0.203 0.797 45 H 0.089 0.911 46 H 0.249 0.751 47 H -0.216 1.216 48 H -0.207 1.207 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.885 -0.149 1.536 8.035 hybrid contribution -0.509 0.444 -0.158 0.694 sum 7.376 0.296 1.378 7.510 Atomic orbital electron populations 1.23528 0.75204 1.05574 1.02415 1.86548 1.24768 1.33485 1.83555 1.24395 0.92808 0.80850 0.70536 1.90602 1.68046 1.37244 1.47413 1.24159 0.85411 1.03153 1.04580 1.23129 0.97341 0.94582 1.00283 1.21446 0.83901 0.94703 0.93789 1.23155 0.97569 1.00036 0.94510 1.22552 0.98026 0.98267 0.96228 1.22876 0.94833 1.03372 0.95400 1.23129 0.89491 0.97532 0.93723 1.48096 1.08314 1.41055 1.34625 1.18194 0.88748 0.77461 0.78378 1.90182 1.38027 1.59003 1.56802 1.19427 0.93144 0.96394 1.08318 1.21413 0.90205 1.00480 0.97497 1.20079 0.99158 0.93078 1.02258 1.18726 0.86715 0.94997 0.99567 1.41686 1.10225 1.13088 1.52772 1.21869 0.95474 0.88321 1.01418 1.20081 0.93674 0.95493 1.09345 1.24365 1.03739 0.94434 0.94052 1.86466 1.77972 1.41948 1.31367 0.93799 0.79059 0.84113 0.74080 1.19145 0.93382 0.95144 1.05591 1.20536 0.95518 0.94465 0.92877 0.85324 0.91780 0.92272 0.80770 0.87976 0.91448 0.90747 0.87853 0.88703 0.88804 0.90371 0.87001 0.88389 0.88414 0.81327 0.82061 0.72196 0.79707 0.91150 0.75090 1.21562 1.20678 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.32 16 2 O -0.37 -4.22 10.56 -51.32 -0.54 -4.77 16 3 C 0.47 6.18 7.48 71.24 0.53 6.71 16 4 O -0.54 -9.32 15.64 21.98 0.34 -8.98 16 5 C -0.16 -1.54 3.61 -10.93 -0.04 -1.58 16 6 C -0.11 -0.73 6.51 30.95 0.20 -0.53 16 7 C 0.15 0.24 1.44 3.98 0.01 0.24 16 8 C -0.11 -0.53 6.72 30.95 0.21 -0.32 16 9 C -0.11 0.56 6.30 31.64 0.20 0.76 16 10 C -0.13 1.05 7.09 32.05 0.23 1.28 16 11 C 0.08 -0.51 5.05 86.84 0.44 -0.07 16 12 N -0.59 -0.95 3.17 -770.18 -2.44 -3.39 16 13 C 0.58 4.41 7.34 86.73 0.64 5.05 16 14 O -0.56 -7.71 12.23 -3.95 -0.05 -7.76 16 15 C -0.17 -0.98 5.70 -20.09 -0.11 -1.09 16 16 C -0.08 0.06 7.84 22.30 0.17 0.24 16 17 C -0.13 0.21 10.00 22.10 0.22 0.43 16 18 C 0.11 0.33 7.27 39.19 0.28 0.62 16 19 N -0.57 0.46 6.05 -187.47 -1.13 -0.68 16 20 C 0.06 0.12 10.43 82.99 0.87 0.99 16 21 C -0.18 -1.16 5.61 -18.61 -0.10 -1.26 16 22 C -0.06 -0.14 3.05 71.24 0.22 0.08 16 23 O -0.57 -1.82 12.86 -148.98 -1.92 -3.73 16 24 Si 0.79 -2.09 30.80 68.60 2.11 0.02 16 25 C -0.13 -1.05 6.34 -20.21 -0.13 -1.18 16 26 C -0.01 -0.13 9.64 22.74 0.22 0.09 16 27 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 29 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 30 H 0.18 2.48 4.07 -81.81 -0.33 2.15 16 31 H 0.10 0.66 7.41 -2.39 -0.02 0.64 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.24 7.88 -2.39 -0.02 0.22 16 35 H 0.09 -0.57 7.79 -2.39 -0.02 -0.59 16 36 H 0.09 -0.60 8.10 -2.39 -0.02 -0.62 16 37 H 0.08 -0.57 8.14 -2.38 -0.02 -0.59 16 38 H 0.11 -1.37 8.14 -2.38 -0.02 -1.39 16 39 H 0.10 -0.73 6.12 -2.38 -0.01 -0.74 16 40 H 0.10 -0.97 7.33 -2.39 -0.02 -0.99 16 41 H 0.17 -1.18 4.59 -2.91 -0.01 -1.19 16 42 H 0.16 -1.39 8.06 -2.91 -0.02 -1.41 16 43 H 0.44 -3.52 8.96 -92.71 -0.83 -4.35 16 44 H 0.19 -0.39 6.30 -2.91 -0.02 -0.41 16 45 H 0.07 0.11 7.96 -2.38 -0.02 0.10 16 46 H 0.40 -2.89 8.74 -74.06 -0.65 -3.54 16 47 H -0.29 -0.77 7.11 99.48 0.71 -0.07 16 48 H -0.28 -0.48 7.04 99.48 0.70 0.22 16 49 H 0.12 1.36 7.89 -2.91 -0.02 1.33 16 Total: 0.00 -28.25 391.64 0.88 -27.38 By element: Atomic # 1 Polarization: -9.11 SS G_CDS: -0.74 Total: -9.86 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.24 Total: 11.77 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -3.57 Total: -4.07 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -2.16 Total: -25.24 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.11 Total: 0.02 kcal Total: -28.25 0.88 -27.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13287722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.471 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds