Wall clock time and date at job start Sun Mar 7 2021 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34234 * 116.99817 * 2 1 4 4 O 1.20823 * 120.00383 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99737 * 179.97438 * 3 2 1 6 6 C 1.53896 * 113.59459 * 179.97438 * 5 3 2 7 7 C 1.53151 * 86.88986 * 139.53697 * 6 5 3 8 8 C 1.53143 * 87.73256 * 334.92418 * 7 6 5 9 9 C 1.53745 * 114.76859 * 218.57145 * 7 6 5 10 10 C 1.55584 * 102.76386 * 251.56595 * 9 7 6 11 11 C 1.54966 * 101.53952 * 325.04588 * 10 9 7 12 12 N 1.46379 * 115.36380 * 92.05302 * 7 6 5 13 13 C 1.34773 * 125.79639 * 311.15847 * 12 7 6 14 14 O 1.21630 * 120.00324 * 358.23416 * 13 12 7 15 15 C 1.47263 * 119.99960 * 178.23063 * 13 12 7 16 16 C 1.36766 * 126.94208 * 8.61901 * 15 13 12 17 17 N 1.34656 * 108.39858 * 179.97438 * 16 15 13 18 18 C 1.46503 * 124.85307 * 180.02562 * 17 16 15 19 19 C 1.36448 * 110.29799 * 0.02562 * 17 16 15 20 20 C 1.50703 * 125.57092 * 179.97438 * 19 17 16 21 21 O 1.42896 * 109.47451 * 29.99178 * 20 19 17 22 22 Si 1.86300 * 109.47007 * 149.99683 * 20 19 17 23 23 C 1.34486 * 108.85714 * 359.74400 * 19 17 16 24 24 H 1.08993 * 109.47163 * 60.00291 * 1 2 3 25 25 H 1.09002 * 109.47049 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47272 * 300.00635 * 1 2 3 27 27 H 1.09005 * 112.83705 * 48.85811 * 5 3 2 28 28 H 1.09000 * 113.64369 * 25.03820 * 6 5 3 29 29 H 1.08997 * 113.72515 * 254.04333 * 6 5 3 30 30 H 1.08997 * 113.63990 * 139.57877 * 8 7 6 31 31 H 1.09004 * 113.64038 * 270.57763 * 8 7 6 32 32 H 1.09005 * 110.75346 * 9.87929 * 9 7 6 33 33 H 1.08996 * 110.76004 * 133.06731 * 9 7 6 34 34 H 1.08997 * 111.09754 * 206.96948 * 10 9 7 35 35 H 1.09005 * 110.99900 * 83.06880 * 10 9 7 36 36 H 1.09003 * 110.35563 * 277.76899 * 11 10 9 37 37 H 1.08999 * 110.36351 * 155.57242 * 11 10 9 38 38 H 1.08000 * 125.80222 * 359.94386 * 16 15 13 39 39 H 1.09005 * 109.46916 * 89.98017 * 18 17 16 40 40 H 1.08995 * 109.47519 * 209.97625 * 18 17 16 41 41 H 1.08994 * 109.47040 * 329.98430 * 18 17 16 42 42 H 1.09009 * 109.46840 * 269.99350 * 20 19 17 43 43 H 0.96698 * 113.99945 * 60.00448 * 21 20 19 44 44 H 1.48501 * 109.99917 * 179.97438 * 22 20 19 45 45 H 1.48494 * 110.00086 * 301.31274 * 22 20 19 46 46 H 1.08001 * 126.83565 * 180.25627 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1076 2.7155 -0.0001 7 6 5.1671 2.2291 0.9931 8 6 4.1907 1.1213 1.3987 9 6 5.5092 3.2280 2.1106 10 6 6.9360 3.7081 1.7176 11 6 7.5413 2.4170 1.1108 12 7 6.4228 1.7711 0.3962 13 6 6.5380 0.9071 -0.6317 14 8 5.5424 0.4117 -1.1243 15 6 7.8694 0.5628 -1.1584 16 6 9.0797 0.9001 -0.6179 17 7 10.0509 0.3937 -1.4012 18 6 11.4875 0.5412 -1.1546 19 6 9.5059 -0.2767 -2.4573 20 6 10.2796 -0.9757 -3.5455 21 8 11.5218 -1.4467 -3.0194 22 14 9.2883 -2.4183 -4.1835 23 6 8.1656 -0.2159 -2.3658 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 4.0237 0.6368 -0.7557 28 1 3.4144 3.4432 0.4217 29 1 4.5191 3.0289 -0.9596 30 1 4.6685 0.1551 1.5604 31 1 3.5205 1.4049 2.2103 32 1 4.8076 4.0622 2.1111 33 1 5.5192 2.7329 3.0816 34 1 7.4980 4.0278 2.5951 35 1 6.8894 4.5041 0.9743 36 1 7.9135 1.7650 1.9011 37 1 8.3432 2.6647 0.4153 38 1 9.2307 1.4754 0.2835 39 1 11.8377 -0.2883 -0.5403 40 1 12.0213 0.5402 -2.1049 41 1 11.6722 1.4814 -0.6350 42 1 10.4714 -0.2778 -4.3606 43 1 11.4273 -2.0733 -2.2890 44 1 10.0401 -3.1157 -5.2576 45 1 8.9929 -3.3614 -3.0752 46 1 7.4496 -0.6520 -3.0468 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_13287730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:34:45 Heat of formation + Delta-G solvation = -29.746383 kcal Electronic energy + Delta-G solvation = -30235.402149 eV Core-core repulsion = 26095.365764 eV Total energy + Delta-G solvation = -4140.036385 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.75995 -42.18241 -41.06035 -38.77193 -37.89314 -37.65400 -36.65878 -33.73770 -32.79057 -31.22897 -29.73793 -28.22138 -27.61548 -26.94178 -26.30371 -25.43527 -24.11480 -22.72342 -21.65870 -21.15734 -20.69993 -19.25736 -18.89204 -18.46153 -17.93234 -17.52077 -17.34714 -16.95901 -16.82185 -16.56286 -16.32146 -15.60401 -15.52095 -15.42117 -15.17021 -14.93197 -14.62282 -14.40104 -14.36277 -14.04106 -13.96906 -13.62356 -13.48321 -13.33810 -13.21122 -13.16746 -13.08989 -12.83470 -12.65578 -12.41036 -12.06267 -11.96864 -11.87002 -11.85812 -11.63480 -11.38818 -11.13002 -10.92093 -10.34188 -9.81200 -9.49085 -9.20498 -4.89346 0.71913 1.03998 1.11041 1.46082 1.63143 1.77198 1.80749 1.91450 2.13837 2.47598 3.21846 3.27537 3.40165 3.53378 3.59412 3.63712 3.73754 3.79463 3.92413 4.03499 4.19611 4.21078 4.23770 4.25190 4.31209 4.41936 4.46059 4.48227 4.54505 4.59371 4.62671 4.64028 4.72538 4.77981 4.78977 4.89349 4.93265 4.96859 5.03103 5.04295 5.14678 5.30173 5.33621 5.39454 5.53478 5.70907 5.99218 6.23680 6.36072 6.53651 6.69618 7.39251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.544 6.544 5 C -0.156 4.156 6 C -0.116 4.116 7 C 0.150 3.850 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.126 4.126 11 C 0.081 3.919 12 N -0.595 5.595 13 C 0.603 3.397 14 O -0.566 6.566 15 C -0.255 4.255 16 C 0.056 3.944 17 N -0.427 5.427 18 C 0.061 3.939 19 C -0.022 4.022 20 C -0.042 4.042 21 O -0.540 6.540 22 Si 0.770 3.230 23 C -0.153 4.153 24 H 0.059 0.941 25 H 0.128 0.872 26 H 0.063 0.937 27 H 0.181 0.819 28 H 0.098 0.902 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.214 0.786 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.133 0.867 43 H 0.386 0.614 44 H -0.290 1.290 45 H -0.295 1.295 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 2.265 4.309 9.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.435 6.435 5 C -0.173 4.173 6 C -0.154 4.154 7 C 0.064 3.936 8 C -0.153 4.153 9 C -0.152 4.152 10 C -0.164 4.164 11 C -0.040 4.040 12 N -0.326 5.326 13 C 0.397 3.603 14 O -0.449 6.449 15 C -0.265 4.265 16 C -0.080 4.080 17 N -0.101 5.101 18 C -0.079 4.079 19 C -0.132 4.132 20 C -0.152 4.152 21 O -0.348 6.348 22 Si 0.674 3.326 23 C -0.177 4.177 24 H 0.077 0.923 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.196 0.804 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.230 0.770 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.151 0.849 43 H 0.235 0.765 44 H -0.217 1.217 45 H -0.222 1.222 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.462 1.782 3.457 8.415 hybrid contribution -0.121 -0.383 0.601 0.723 sum 7.342 1.399 4.058 8.504 Atomic orbital electron populations 1.23517 0.75309 1.05516 1.02383 1.86552 1.24681 1.33530 1.83577 1.24466 0.92900 0.80798 0.70461 1.90600 1.68098 1.37280 1.47503 1.24218 0.85210 1.03066 1.04817 1.23165 0.97360 0.94607 1.00304 1.21383 0.84101 0.94481 0.93667 1.23099 0.97658 1.00117 0.94379 1.22594 0.98415 0.97536 0.96659 1.22901 0.95104 0.96119 1.02299 1.23089 0.89462 0.94701 0.96741 1.48036 1.07716 1.44182 1.32665 1.17419 0.88088 0.76991 0.77763 1.90136 1.38027 1.55561 1.61145 1.20182 0.91381 1.12849 1.02039 1.23133 0.86168 1.00283 0.98460 1.43799 1.08052 1.39264 1.19008 1.22455 0.75848 1.04779 1.04783 1.20860 0.92944 1.04756 0.94602 1.24688 0.89221 1.05355 0.95925 1.86559 1.28302 1.64698 1.55218 0.93393 0.84756 0.75422 0.79010 1.21798 0.93738 1.03566 0.98559 0.92266 0.85385 0.91853 0.80393 0.88325 0.91667 0.90548 0.88173 0.89230 0.88631 0.87036 0.90541 0.88820 0.88150 0.77028 0.89504 0.88805 0.87697 0.84939 0.76480 1.21670 1.22213 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.32 16 2 O -0.37 -4.17 10.57 -51.45 -0.54 -4.72 16 3 C 0.47 6.11 7.48 71.24 0.53 6.64 16 4 O -0.54 -9.34 15.64 21.97 0.34 -9.00 16 5 C -0.16 -1.49 3.61 -10.94 -0.04 -1.53 16 6 C -0.12 -0.74 6.48 30.95 0.20 -0.53 16 7 C 0.15 0.16 1.44 3.97 0.01 0.16 16 8 C -0.11 -0.47 6.76 30.94 0.21 -0.26 16 9 C -0.11 0.63 6.31 31.74 0.20 0.83 16 10 C -0.13 1.17 7.11 32.16 0.23 1.40 16 11 C 0.08 -0.65 5.31 86.84 0.46 -0.19 16 12 N -0.59 -0.28 3.17 -770.59 -2.44 -2.72 16 13 C 0.60 3.83 7.57 86.62 0.66 4.48 16 14 O -0.57 -7.30 12.53 -4.13 -0.05 -7.35 16 15 C -0.25 -0.79 6.23 -19.04 -0.12 -0.91 16 16 C 0.06 -0.21 9.69 83.91 0.81 0.61 16 17 N -0.43 1.58 3.09 -533.24 -1.65 -0.07 16 18 C 0.06 -0.58 9.81 127.77 1.25 0.67 16 19 C -0.02 0.01 6.14 40.98 0.25 0.26 16 20 C -0.04 0.11 2.87 71.24 0.20 0.32 16 21 O -0.54 1.51 10.31 -148.98 -1.54 -0.03 16 22 Si 0.77 -0.82 31.11 68.60 2.13 1.31 16 23 C -0.15 -0.47 9.50 23.62 0.22 -0.25 16 24 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 25 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 27 H 0.18 2.45 4.06 -82.95 -0.34 2.11 16 28 H 0.10 0.66 7.21 -2.39 -0.02 0.64 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.21 8.08 -2.38 -0.02 0.19 16 32 H 0.09 -0.48 7.79 -2.38 -0.02 -0.50 16 33 H 0.10 -0.72 8.11 -2.39 -0.02 -0.74 16 34 H 0.11 -1.50 8.14 -2.39 -0.02 -1.52 16 35 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.09 -1.06 8.05 -2.39 -0.02 -1.08 16 37 H 0.10 -1.08 5.31 -2.39 -0.01 -1.10 16 38 H 0.21 -2.33 4.75 -2.91 -0.01 -2.34 16 39 H 0.09 -0.98 8.14 -2.38 -0.02 -1.00 16 40 H 0.09 -0.71 6.73 -2.39 -0.02 -0.72 16 41 H 0.10 -1.44 8.13 -2.39 -0.02 -1.46 16 42 H 0.13 -0.62 7.96 -2.38 -0.02 -0.64 16 43 H 0.39 -2.74 8.70 -74.06 -0.64 -3.38 16 44 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 45 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 46 H 0.16 0.34 6.88 -2.91 -0.02 0.32 16 Total: 0.00 -24.31 364.36 2.62 -21.69 By element: Atomic # 1 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.14 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.28 Total: 13.02 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: -4.09 Total: -2.78 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.79 Total: -21.09 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.13 Total: 1.31 kcal Total: -24.31 2.62 -21.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13287730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -24.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds