Wall clock time and date at job start Sun Mar 7 2021 03:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 117.00017 * 2 1 4 4 O 1.20823 * 119.99630 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.53892 * 113.59756 * 180.02562 * 5 3 2 7 7 C 1.53135 * 86.89965 * 139.53616 * 6 5 3 8 8 C 1.53146 * 87.72908 * 334.92303 * 7 6 5 9 9 C 1.53758 * 114.91343 * 218.68349 * 7 6 5 10 10 C 1.55299 * 102.82660 * 208.22927 * 9 7 6 11 11 C 1.54971 * 101.66622 * 34.75443 * 10 9 7 12 12 N 1.46379 * 115.37903 * 92.02387 * 7 6 5 13 13 C 1.34773 * 125.80484 * 308.72695 * 12 7 6 14 14 O 1.21599 * 119.99581 * 5.50504 * 13 12 7 15 15 C 1.47527 * 120.00469 * 185.50749 * 13 12 7 16 16 C 1.40139 * 120.19400 * 140.16675 * 15 13 12 17 17 O 1.35647 * 120.14943 * 0.02562 * 16 15 13 18 18 C 1.38709 * 119.70146 * 179.97438 * 16 15 13 19 19 C 1.38054 * 120.08677 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.80869 * 180.02562 * 19 18 16 21 21 O 1.42902 * 109.46643 * 299.99351 * 20 19 18 22 22 Si 1.86292 * 109.47085 * 179.97438 * 20 19 18 23 23 C 1.38553 * 120.38497 * 0.28586 * 19 18 16 24 24 C 1.37787 * 120.30127 * 359.45495 * 23 19 18 25 25 H 1.09003 * 109.46692 * 59.99856 * 1 2 3 26 26 H 1.08997 * 109.47338 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47010 * 300.00102 * 1 2 3 28 28 H 1.09001 * 112.83642 * 48.86339 * 5 3 2 29 29 H 1.08999 * 113.64331 * 25.03667 * 6 5 3 30 30 H 1.08998 * 113.72987 * 254.05499 * 6 5 3 31 31 H 1.09003 * 113.64824 * 139.58055 * 8 7 6 32 32 H 1.08999 * 113.64365 * 270.57258 * 8 7 6 33 33 H 1.09003 * 110.90671 * 89.79984 * 9 7 6 34 34 H 1.08994 * 110.67669 * 326.55885 * 9 7 6 35 35 H 1.08993 * 110.99171 * 276.65990 * 10 9 7 36 36 H 1.09000 * 110.98593 * 152.84488 * 10 9 7 37 37 H 1.08999 * 110.36148 * 204.47323 * 11 10 9 38 38 H 1.09002 * 110.45070 * 82.21682 * 11 10 9 39 39 H 0.96706 * 114.00286 * 269.97751 * 17 16 15 40 40 H 1.08001 * 119.95796 * 179.97438 * 18 16 15 41 41 H 1.09002 * 109.47115 * 59.99178 * 20 19 18 42 42 H 0.96700 * 113.99741 * 179.97438 * 21 20 19 43 43 H 1.48506 * 110.00265 * 298.67553 * 22 20 19 44 44 H 1.48497 * 110.00543 * 60.00030 * 22 20 19 45 45 H 1.08003 * 119.84708 * 179.70787 * 23 19 18 46 46 H 1.07997 * 120.04311 * 180.24982 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1078 2.7154 0.0001 7 6 5.1680 2.2279 0.9917 8 6 4.1919 1.1196 1.3969 9 6 5.5117 3.2220 2.1133 10 6 6.9827 2.8606 2.4556 11 6 7.5397 2.4641 1.0648 12 7 6.4231 1.7701 0.3935 13 6 6.5393 0.8719 -0.6046 14 8 5.5436 0.4418 -1.1543 15 6 7.8744 0.4104 -1.0300 16 6 8.0834 -0.9360 -1.3576 17 8 7.0586 -1.8218 -1.2855 18 6 9.3428 -1.3587 -1.7569 19 6 10.3845 -0.4558 -1.8314 20 6 11.7500 -0.9217 -2.2666 21 8 12.2218 -1.9232 -1.3630 22 14 12.9281 0.5214 -2.2652 23 6 10.1831 0.8752 -1.5032 24 6 8.9375 1.3134 -1.1097 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0230 0.6372 -0.7575 29 1 3.4149 3.4426 0.4235 30 1 4.5183 3.0302 -0.9593 31 1 4.6698 0.1531 1.5570 32 1 3.5225 1.4021 2.2094 33 1 4.8655 3.0713 2.9781 34 1 5.4397 4.2483 1.7533 35 1 7.0272 2.0200 3.1480 36 1 7.5135 3.7238 2.8571 37 1 8.3919 1.7935 1.1747 38 1 7.8272 3.3524 0.5023 39 1 6.9697 -2.2512 -0.4236 40 1 9.5086 -2.3954 -2.0099 41 1 11.6883 -1.3391 -3.2716 42 1 13.0974 -2.2699 -1.5825 43 1 12.4653 1.5559 -3.2250 44 1 13.0212 1.0999 -0.9008 45 1 11.0054 1.5732 -1.5600 46 1 8.7843 2.3526 -0.8587 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15736542_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:09 Heat of formation + Delta-G solvation = -99.266201 kcal Electronic energy + Delta-G solvation = -31959.625777 eV Core-core repulsion = 27590.629984 eV Total energy + Delta-G solvation = -4368.995793 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.150 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.67016 -41.34337 -40.66148 -38.91302 -38.29076 -37.59037 -37.23463 -36.51169 -33.47982 -32.22577 -31.24528 -29.68197 -28.16827 -27.67598 -26.88331 -25.30052 -24.06288 -24.01521 -22.93468 -22.07401 -21.24999 -19.46620 -19.02460 -18.76846 -18.56972 -18.12950 -17.77459 -17.37621 -17.26583 -17.08986 -16.78338 -16.22546 -16.04459 -15.79455 -15.52578 -15.30473 -14.97789 -14.84129 -14.46204 -14.37138 -14.24722 -14.09300 -13.88042 -13.74715 -13.51932 -13.41247 -13.05863 -13.00572 -12.92145 -12.58447 -12.56126 -12.26197 -12.14941 -12.02165 -11.85639 -11.57209 -11.52386 -11.44631 -11.03565 -10.56628 -10.35967 -10.04986 -9.90192 -9.75690 -5.09402 -0.40711 0.03414 1.11696 1.43151 1.49545 1.55716 1.67729 1.82235 2.00666 2.33947 2.97818 3.05113 3.16490 3.30657 3.40412 3.46854 3.59607 3.63298 3.68488 3.73028 3.85551 3.92772 4.02035 4.13860 4.15603 4.22889 4.31331 4.35028 4.36375 4.39175 4.48025 4.53880 4.64858 4.65921 4.72165 4.74050 4.76203 4.80125 4.87860 4.93929 4.95905 5.00738 5.08779 5.14680 5.38730 5.41823 5.49977 5.65620 6.29786 6.45194 6.56281 7.00725 7.22096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.516 6.516 5 C -0.146 4.146 6 C -0.118 4.118 7 C 0.142 3.858 8 C -0.119 4.119 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.093 3.907 12 N -0.594 5.594 13 C 0.581 3.419 14 O -0.500 6.500 15 C -0.156 4.156 16 C 0.169 3.831 17 O -0.477 6.477 18 C -0.121 4.121 19 C -0.033 4.033 20 C -0.078 4.078 21 O -0.545 6.545 22 Si 0.687 3.313 23 C -0.140 4.140 24 C -0.068 4.068 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.191 0.809 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.395 0.605 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.386 0.614 43 H -0.253 1.253 44 H -0.248 1.248 45 H 0.127 0.873 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -0.501 2.725 8.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.404 6.404 5 C -0.163 4.163 6 C -0.157 4.157 7 C 0.056 3.944 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.171 4.171 11 C -0.029 4.029 12 N -0.326 5.326 13 C 0.372 3.628 14 O -0.377 6.377 15 C -0.159 4.159 16 C 0.122 3.878 17 O -0.288 6.288 18 C -0.140 4.140 19 C -0.033 4.033 20 C -0.189 4.189 21 O -0.351 6.351 22 Si 0.588 3.412 23 C -0.158 4.158 24 C -0.086 4.086 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.080 0.920 28 H 0.207 0.793 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.253 0.747 40 H 0.161 0.839 41 H 0.098 0.902 42 H 0.234 0.766 43 H -0.178 1.178 44 H -0.173 1.173 45 H 0.145 0.855 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.948 0.633 2.219 7.321 hybrid contribution -0.784 -0.256 0.367 0.903 sum 6.164 0.377 2.586 6.695 Atomic orbital electron populations 1.23272 0.76621 1.03721 1.02453 1.86551 1.23191 1.33683 1.83869 1.23989 0.92145 0.81087 0.71435 1.90634 1.67351 1.36530 1.45899 1.24063 0.86660 1.02215 1.03408 1.23177 0.96672 0.95607 1.00202 1.21447 0.84151 0.94967 0.93788 1.23158 0.97267 0.99660 0.95650 1.22521 0.96846 0.98772 0.97178 1.22839 0.95852 1.02603 0.95851 1.22678 0.89928 0.96954 0.93359 1.48086 1.07431 1.41706 1.35425 1.17806 0.88579 0.77801 0.78631 1.90263 1.36439 1.57021 1.54023 1.20182 0.93840 0.94920 1.06991 1.18390 0.86829 0.87447 0.95116 1.84841 1.48682 1.57053 1.38216 1.21281 0.90537 1.01025 1.01116 1.19426 0.94073 0.92947 0.96900 1.24774 0.97318 1.01493 0.95291 1.86472 1.39114 1.57125 1.52404 0.95069 0.87496 0.77054 0.81627 1.20814 0.97429 0.95268 1.02279 1.21255 0.91054 0.99627 0.96715 0.91940 0.88074 0.92011 0.79327 0.87748 0.90316 0.90046 0.88737 0.89319 0.89714 0.90149 0.89248 0.89765 0.90625 0.74743 0.83936 0.90161 0.76637 1.17766 1.17253 0.85544 0.84339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.56 101.05 1.07 1.13 16 2 O -0.36 -1.73 10.57 -39.27 -0.41 -2.15 16 3 C 0.47 2.58 7.48 36.00 0.27 2.85 16 4 O -0.52 -3.92 15.64 -18.75 -0.29 -4.22 16 5 C -0.15 -0.53 3.61 -90.85 -0.33 -0.86 16 6 C -0.12 -0.28 6.50 -26.20 -0.17 -0.45 16 7 C 0.14 0.04 1.44 -131.35 -0.19 -0.15 16 8 C -0.12 -0.14 6.73 -26.19 -0.18 -0.32 16 9 C -0.12 0.24 6.30 -25.12 -0.16 0.08 16 10 C -0.13 0.43 7.09 -24.47 -0.17 0.26 16 11 C 0.09 -0.22 5.22 -2.39 -0.01 -0.23 16 12 N -0.59 -0.20 3.17 -157.44 -0.50 -0.69 16 13 C 0.58 1.53 7.03 -12.47 -0.09 1.44 16 14 O -0.50 -2.71 11.70 -10.61 -0.12 -2.84 16 15 C -0.16 -0.29 5.46 -104.85 -0.57 -0.86 16 16 C 0.17 0.36 6.68 -38.69 -0.26 0.10 16 17 O -0.48 -1.03 12.27 -34.53 -0.42 -1.45 16 18 C -0.12 -0.17 9.53 -39.47 -0.38 -0.54 16 19 C -0.03 -0.03 5.43 -104.57 -0.57 -0.60 16 20 C -0.08 0.11 2.80 36.01 0.10 0.21 16 21 O -0.54 0.76 12.74 -35.23 -0.45 0.32 16 22 Si 0.69 -1.74 29.77 -169.99 -5.06 -6.80 16 23 C -0.14 -0.07 8.64 -39.63 -0.34 -0.42 16 24 C -0.07 -0.02 7.92 -39.20 -0.31 -0.33 16 25 H 0.06 0.14 8.13 -51.93 -0.42 -0.29 16 26 H 0.10 -0.05 8.14 -51.93 -0.42 -0.48 16 27 H 0.06 0.11 8.13 -51.93 -0.42 -0.32 16 28 H 0.19 1.03 4.07 -56.92 -0.23 0.80 16 29 H 0.10 0.26 7.42 -51.93 -0.39 -0.12 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.09 0.04 7.88 -51.93 -0.41 -0.37 16 33 H 0.09 -0.23 7.79 -51.93 -0.40 -0.63 16 34 H 0.08 -0.21 8.11 -51.93 -0.42 -0.63 16 35 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 36 H 0.09 -0.40 8.14 -51.93 -0.42 -0.82 16 37 H 0.08 -0.23 6.67 -51.93 -0.35 -0.58 16 38 H 0.08 -0.26 7.34 -51.93 -0.38 -0.64 16 39 H 0.39 -0.86 9.06 45.56 0.41 -0.44 16 40 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 42 H 0.39 -2.42 8.74 45.56 0.40 -2.02 16 43 H -0.25 0.01 7.11 56.52 0.40 0.41 16 44 H -0.25 -0.06 7.11 56.52 0.40 0.35 16 45 H 0.13 -0.05 4.85 -52.48 -0.25 -0.31 16 46 H 0.14 -0.26 5.79 -52.49 -0.30 -0.56 16 LS Contribution 369.21 15.07 5.56 5.56 Total: 0.00 -10.42 369.21 -9.30 -19.72 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: -5.32 Total: -8.78 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.29 Total: 1.33 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -0.50 Total: -0.69 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.70 Total: -10.34 kcal Atomic # 14 Polarization: -1.74 SS G_CDS: -5.06 Total: -6.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -10.42 -9.30 -19.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.544 kcal (2) G-P(sol) polarization free energy of solvation -10.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds