Wall clock time and date at job start Sun Mar 7 2021 03:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 117.00017 * 2 1 4 4 O 1.20823 * 119.99630 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99874 * 180.02562 * 3 2 1 6 6 C 1.53892 * 113.59756 * 180.02562 * 5 3 2 7 7 C 1.53135 * 86.89965 * 139.53616 * 6 5 3 8 8 C 1.53146 * 87.72908 * 334.92303 * 7 6 5 9 9 C 1.53758 * 114.91343 * 218.68349 * 7 6 5 10 10 C 1.55299 * 102.82660 * 208.22927 * 9 7 6 11 11 C 1.54971 * 101.66622 * 34.75443 * 10 9 7 12 12 N 1.46379 * 115.37903 * 92.02387 * 7 6 5 13 13 C 1.34773 * 125.80484 * 308.72695 * 12 7 6 14 14 O 1.21599 * 119.99581 * 5.50504 * 13 12 7 15 15 C 1.47527 * 120.00469 * 185.50749 * 13 12 7 16 16 C 1.40139 * 120.19400 * 140.16675 * 15 13 12 17 17 O 1.35647 * 120.14943 * 0.02562 * 16 15 13 18 18 C 1.38709 * 119.70146 * 179.97438 * 16 15 13 19 19 C 1.38054 * 120.08677 * 359.97438 * 18 16 15 20 20 C 1.50700 * 119.80869 * 180.02562 * 19 18 16 21 21 O 1.42902 * 109.46643 * 299.99351 * 20 19 18 22 22 Si 1.86292 * 109.47085 * 179.97438 * 20 19 18 23 23 C 1.38553 * 120.38497 * 0.28586 * 19 18 16 24 24 C 1.37787 * 120.30127 * 359.45495 * 23 19 18 25 25 H 1.09003 * 109.46692 * 59.99856 * 1 2 3 26 26 H 1.08997 * 109.47338 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47010 * 300.00102 * 1 2 3 28 28 H 1.09001 * 112.83642 * 48.86339 * 5 3 2 29 29 H 1.08999 * 113.64331 * 25.03667 * 6 5 3 30 30 H 1.08998 * 113.72987 * 254.05499 * 6 5 3 31 31 H 1.09003 * 113.64824 * 139.58055 * 8 7 6 32 32 H 1.08999 * 113.64365 * 270.57258 * 8 7 6 33 33 H 1.09003 * 110.90671 * 89.79984 * 9 7 6 34 34 H 1.08994 * 110.67669 * 326.55885 * 9 7 6 35 35 H 1.08993 * 110.99171 * 276.65990 * 10 9 7 36 36 H 1.09000 * 110.98593 * 152.84488 * 10 9 7 37 37 H 1.08999 * 110.36148 * 204.47323 * 11 10 9 38 38 H 1.09002 * 110.45070 * 82.21682 * 11 10 9 39 39 H 0.96706 * 114.00286 * 269.97751 * 17 16 15 40 40 H 1.08001 * 119.95796 * 179.97438 * 18 16 15 41 41 H 1.09002 * 109.47115 * 59.99178 * 20 19 18 42 42 H 0.96700 * 113.99741 * 179.97438 * 21 20 19 43 43 H 1.48506 * 110.00265 * 298.67553 * 22 20 19 44 44 H 1.48497 * 110.00543 * 60.00030 * 22 20 19 45 45 H 1.08003 * 119.84708 * 179.70787 * 23 19 18 46 46 H 1.07997 * 120.04311 * 180.24982 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1078 2.7154 0.0001 7 6 5.1680 2.2279 0.9917 8 6 4.1919 1.1196 1.3969 9 6 5.5117 3.2220 2.1133 10 6 6.9827 2.8606 2.4556 11 6 7.5397 2.4641 1.0648 12 7 6.4231 1.7701 0.3935 13 6 6.5393 0.8719 -0.6046 14 8 5.5436 0.4418 -1.1543 15 6 7.8744 0.4104 -1.0300 16 6 8.0834 -0.9360 -1.3576 17 8 7.0586 -1.8218 -1.2855 18 6 9.3428 -1.3587 -1.7569 19 6 10.3845 -0.4558 -1.8314 20 6 11.7500 -0.9217 -2.2666 21 8 12.2218 -1.9232 -1.3630 22 14 12.9281 0.5214 -2.2652 23 6 10.1831 0.8752 -1.5032 24 6 8.9375 1.3134 -1.1097 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 4.0230 0.6372 -0.7575 29 1 3.4149 3.4426 0.4235 30 1 4.5183 3.0302 -0.9593 31 1 4.6698 0.1531 1.5570 32 1 3.5225 1.4021 2.2094 33 1 4.8655 3.0713 2.9781 34 1 5.4397 4.2483 1.7533 35 1 7.0272 2.0200 3.1480 36 1 7.5135 3.7238 2.8571 37 1 8.3919 1.7935 1.1747 38 1 7.8272 3.3524 0.5023 39 1 6.9697 -2.2512 -0.4236 40 1 9.5086 -2.3954 -2.0099 41 1 11.6883 -1.3391 -3.2716 42 1 13.0974 -2.2699 -1.5825 43 1 12.4653 1.5559 -3.2250 44 1 13.0212 1.0999 -0.9008 45 1 11.0054 1.5732 -1.5600 46 1 8.7843 2.3526 -0.8587 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_13422076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:07 Heat of formation + Delta-G solvation = -100.603526 kcal Electronic energy + Delta-G solvation = -31959.683768 eV Core-core repulsion = 27590.629984 eV Total energy + Delta-G solvation = -4369.053784 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.79417 -41.56187 -40.83621 -39.00097 -38.36495 -37.77038 -37.30744 -36.64743 -33.48375 -32.18838 -31.29847 -29.82326 -28.24056 -27.65268 -27.04078 -25.36894 -24.12662 -24.05873 -22.87350 -22.07618 -21.50602 -19.59403 -19.16889 -18.92964 -18.41423 -18.28636 -17.97545 -17.52095 -17.36507 -17.28478 -16.82447 -16.28569 -16.16401 -15.83234 -15.46284 -15.32151 -15.04619 -14.90838 -14.51231 -14.42887 -14.20763 -14.16409 -13.94166 -13.78074 -13.60170 -13.46555 -13.18285 -13.03045 -12.92984 -12.72557 -12.52361 -12.17337 -12.12263 -12.03750 -11.96675 -11.91301 -11.60410 -11.45954 -11.23349 -10.58849 -10.42609 -10.06131 -9.99156 -9.79700 -4.89775 -0.46625 -0.00442 1.03192 1.28562 1.40496 1.63719 1.69604 1.73461 1.97121 2.30582 2.96479 3.03587 3.26630 3.30176 3.35619 3.43197 3.55716 3.62869 3.69043 3.74601 3.91397 3.99653 4.07836 4.13346 4.15310 4.20218 4.21317 4.25462 4.34567 4.51379 4.53378 4.55033 4.59028 4.63457 4.64991 4.69868 4.83890 4.84891 4.85812 4.94443 4.98248 5.05856 5.11624 5.19289 5.24226 5.29166 5.38663 5.46343 6.25106 6.59745 6.61874 6.88437 7.06509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.543 6.543 5 C -0.155 4.155 6 C -0.117 4.117 7 C 0.147 3.853 8 C -0.111 4.111 9 C -0.112 4.112 10 C -0.125 4.125 11 C 0.085 3.915 12 N -0.590 5.590 13 C 0.577 3.423 14 O -0.537 6.537 15 C -0.170 4.170 16 C 0.158 3.842 17 O -0.495 6.495 18 C -0.131 4.131 19 C -0.043 4.043 20 C -0.088 4.088 21 O -0.561 6.561 22 Si 0.775 3.225 23 C -0.150 4.150 24 C -0.061 4.061 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.064 0.936 28 H 0.176 0.824 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.409 0.591 40 H 0.146 0.854 41 H 0.096 0.904 42 H 0.406 0.594 43 H -0.286 1.286 44 H -0.284 1.284 45 H 0.136 0.864 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.856 -0.074 3.680 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.433 6.433 5 C -0.172 4.172 6 C -0.155 4.155 7 C 0.062 3.938 8 C -0.149 4.149 9 C -0.150 4.150 10 C -0.163 4.163 11 C -0.036 4.036 12 N -0.321 5.321 13 C 0.369 3.631 14 O -0.417 6.417 15 C -0.173 4.173 16 C 0.112 3.888 17 O -0.308 6.308 18 C -0.149 4.149 19 C -0.043 4.043 20 C -0.197 4.197 21 O -0.372 6.372 22 Si 0.680 3.320 23 C -0.167 4.167 24 C -0.079 4.079 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.083 0.917 28 H 0.191 0.809 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.269 0.731 40 H 0.164 0.836 41 H 0.113 0.887 42 H 0.258 0.742 43 H -0.213 1.213 44 H -0.211 1.211 45 H 0.153 0.847 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.556 1.028 3.195 9.191 hybrid contribution -1.302 -0.425 0.057 1.371 sum 7.254 0.603 3.252 7.973 Atomic orbital electron populations 1.23529 0.75198 1.05581 1.02413 1.86548 1.24762 1.33445 1.83547 1.24387 0.92813 0.80862 0.70553 1.90606 1.68048 1.37277 1.47398 1.24128 0.85457 1.02985 1.04655 1.23138 0.97412 0.94746 1.00222 1.21459 0.83760 0.94877 0.93741 1.23144 0.97377 1.00027 0.94385 1.22555 0.97905 0.98241 0.96319 1.22847 0.94883 1.03435 0.95120 1.22948 0.89260 0.97382 0.94016 1.48157 1.08373 1.40927 1.34658 1.17983 0.88432 0.77915 0.78813 1.90258 1.37474 1.58460 1.55470 1.20224 0.93930 0.95164 1.08004 1.18587 0.87062 0.87729 0.95459 1.84791 1.49039 1.57349 1.39605 1.21360 0.90503 1.01432 1.01638 1.19820 0.95182 0.93099 0.96218 1.24970 0.96432 1.02452 0.95882 1.86425 1.40880 1.57181 1.52675 0.94054 0.85680 0.74446 0.77825 1.21003 0.97845 0.95467 1.02432 1.21460 0.90440 1.00306 0.95692 0.92361 0.85321 0.91698 0.80872 0.87931 0.91659 0.90305 0.87758 0.88426 0.88965 0.90055 0.87195 0.89172 0.89071 0.73108 0.83625 0.88667 0.74240 1.21341 1.21138 0.84728 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.37 -4.10 10.57 -51.46 -0.54 -4.65 16 3 C 0.47 6.01 7.48 71.23 0.53 6.55 16 4 O -0.54 -9.24 15.64 21.97 0.34 -8.90 16 5 C -0.15 -1.43 3.61 -10.94 -0.04 -1.47 16 6 C -0.12 -0.71 6.50 30.94 0.20 -0.51 16 7 C 0.15 0.13 1.44 3.97 0.01 0.13 16 8 C -0.11 -0.36 6.73 30.94 0.21 -0.15 16 9 C -0.11 0.61 6.30 31.64 0.20 0.81 16 10 C -0.13 1.05 7.09 32.06 0.23 1.28 16 11 C 0.09 -0.50 5.22 86.84 0.45 -0.04 16 12 N -0.59 -0.53 3.17 -770.27 -2.44 -2.97 16 13 C 0.58 3.78 7.03 86.69 0.61 4.39 16 14 O -0.54 -7.08 11.70 11.17 0.13 -6.95 16 15 C -0.17 -0.79 5.46 -20.01 -0.11 -0.90 16 16 C 0.16 0.89 6.68 22.84 0.15 1.04 16 17 O -0.49 -3.07 12.27 -74.42 -0.91 -3.99 16 18 C -0.13 -0.47 9.53 22.34 0.21 -0.26 16 19 C -0.04 -0.08 5.43 -19.83 -0.11 -0.19 16 20 C -0.09 0.31 2.80 71.24 0.20 0.51 16 21 O -0.56 2.01 12.74 -148.98 -1.90 0.12 16 22 Si 0.78 -4.42 29.77 68.60 2.04 -2.38 16 23 C -0.15 -0.16 8.64 22.24 0.19 0.04 16 24 C -0.06 -0.03 7.92 22.52 0.18 0.15 16 25 H 0.06 0.33 8.13 -2.39 -0.02 0.31 16 26 H 0.13 -0.17 8.14 -2.39 -0.02 -0.18 16 27 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 28 H 0.18 2.38 4.07 -81.43 -0.33 2.05 16 29 H 0.10 0.64 7.42 -2.39 -0.02 0.63 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.11 7.88 -2.39 -0.02 0.09 16 33 H 0.10 -0.66 7.79 -2.39 -0.02 -0.68 16 34 H 0.09 -0.59 8.11 -2.39 -0.02 -0.61 16 35 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 36 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 37 H 0.09 -0.60 6.67 -2.39 -0.02 -0.61 16 38 H 0.09 -0.78 7.34 -2.39 -0.02 -0.80 16 39 H 0.41 -0.99 9.06 -74.05 -0.67 -1.66 16 40 H 0.15 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 42 H 0.41 -5.61 8.74 -74.06 -0.65 -6.26 16 43 H -0.29 0.06 7.11 99.48 0.71 0.77 16 44 H -0.28 -0.08 7.11 99.48 0.71 0.63 16 45 H 0.14 -0.15 4.85 -2.91 -0.01 -0.17 16 46 H 0.16 -0.72 5.79 -2.91 -0.02 -0.74 16 Total: 0.00 -26.04 369.21 0.48 -25.56 By element: Atomic # 1 Polarization: -7.98 SS G_CDS: -0.55 Total: -8.54 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 4.31 Total: 12.69 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -2.44 Total: -2.97 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -2.88 Total: -24.37 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.04 Total: -2.38 kcal Total: -26.04 0.48 -25.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13422076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.047 kcal (2) G-P(sol) polarization free energy of solvation -26.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds