Wall clock time and date at job start Sun Mar 7 2021 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99920 * 2 1 4 4 O 1.20825 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99751 * 180.27962 * 3 2 1 6 6 C 1.53898 * 113.59466 * 278.91388 * 5 3 2 7 7 C 1.53321 * 86.83221 * 220.49284 * 6 5 3 8 8 C 1.53135 * 87.76169 * 25.01110 * 7 6 5 9 9 C 1.53737 * 114.69920 * 268.65484 * 7 6 5 10 10 C 1.55292 * 102.73987 * 251.58123 * 9 7 6 11 11 C 1.54971 * 101.66437 * 325.01646 * 10 9 7 12 12 N 1.46379 * 115.40417 * 142.16600 * 7 6 5 13 13 C 1.34780 * 125.79834 * 311.05788 * 12 7 6 14 14 O 1.21605 * 120.00151 * 358.29704 * 13 12 7 15 15 C 1.47376 * 119.99780 * 178.29807 * 13 12 7 16 16 C 1.36419 * 127.19466 * 8.42344 * 15 13 12 17 17 O 1.33651 * 108.39689 * 179.97438 * 16 15 13 18 18 C 1.34212 * 110.91100 * 359.97438 * 17 16 15 19 19 C 1.50697 * 125.44036 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47105 * 119.97644 * 19 18 17 21 21 Si 1.86303 * 109.47149 * 359.97438 * 19 18 17 22 22 C 1.34181 * 109.12415 * 359.75086 * 18 17 16 23 23 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46669 * 300.00104 * 1 2 3 25 25 H 1.08998 * 109.47177 * 60.00020 * 1 2 3 26 26 H 1.08998 * 112.84249 * 50.05447 * 5 3 2 27 27 H 1.08996 * 113.64327 * 334.96211 * 6 5 3 28 28 H 1.08997 * 113.64434 * 105.96525 * 6 5 3 29 29 H 1.08991 * 113.64823 * 220.48497 * 8 7 6 30 30 H 1.09006 * 113.64013 * 89.48575 * 8 7 6 31 31 H 1.09005 * 110.75915 * 9.89368 * 9 7 6 32 32 H 1.09000 * 110.75694 * 133.07941 * 9 7 6 33 33 H 1.08997 * 110.99086 * 83.11026 * 10 9 7 34 34 H 1.09002 * 110.99168 * 206.88237 * 10 9 7 35 35 H 1.09003 * 110.35918 * 155.52767 * 11 10 9 36 36 H 1.09000 * 110.35625 * 277.72347 * 11 10 9 37 37 H 1.08000 * 125.80100 * 359.96393 * 16 15 13 38 38 H 1.08996 * 109.47574 * 239.98171 * 19 18 17 39 39 H 0.96698 * 113.99659 * 300.00933 * 20 19 18 40 40 H 1.48502 * 110.00054 * 58.67605 * 21 19 18 41 41 H 1.48502 * 110.00044 * 179.97438 * 21 19 18 42 42 H 1.08000 * 127.02464 * 180.26238 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0064 6 6 4.1989 1.0857 1.3838 7 6 5.1730 2.2054 0.9990 8 6 4.1079 2.7150 0.0239 9 6 6.4753 1.7250 0.3379 10 6 7.5343 1.9756 1.4457 11 6 6.9968 3.2706 2.1058 12 7 5.5279 3.1277 2.0789 13 6 4.6607 3.7420 2.9078 14 8 3.4644 3.5715 2.7713 15 6 5.1623 4.6204 3.9797 16 6 6.4464 5.0405 4.1684 17 8 6.4792 5.8233 5.2511 18 6 5.2575 5.9417 5.7939 19 6 4.9215 6.7468 7.0227 20 8 3.9634 7.7522 6.6861 21 14 6.4670 7.5557 7.6769 22 6 4.3820 5.2327 5.0650 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.0192 0.6546 -0.7798 27 1 3.5337 1.3485 2.2062 28 1 4.6775 0.1157 1.5180 29 1 4.5135 3.0497 -0.9308 30 1 3.4172 3.4325 0.4669 31 1 6.4158 0.6645 0.0931 32 1 6.6965 2.3136 -0.5524 33 1 7.5544 1.1526 2.1601 34 1 8.5214 2.1381 1.0127 35 1 7.3517 3.3478 3.1336 36 1 7.3051 4.1447 1.5322 37 1 7.2926 4.7840 3.5483 38 1 4.5051 6.0889 7.7855 39 1 4.2671 8.3746 6.0113 40 1 7.0622 8.4307 6.6352 41 1 6.1489 8.3532 8.8886 42 1 3.3214 5.1306 5.2410 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15736542_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:29 Heat of formation + Delta-G solvation = -80.923197 kcal Electronic energy + Delta-G solvation = -27990.598823 eV Core-core repulsion = 23906.162201 eV Total energy + Delta-G solvation = -4084.436621 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.74981 -42.36505 -40.94454 -38.99648 -38.16524 -37.50671 -36.68021 -33.95887 -32.85859 -31.67094 -29.69766 -28.21778 -26.93908 -26.74341 -26.13769 -24.50862 -23.28786 -22.09078 -21.95034 -20.92027 -19.48244 -18.81008 -18.45881 -17.87883 -17.70740 -17.59892 -17.42931 -17.22259 -16.85464 -16.39923 -15.91938 -15.68290 -15.64622 -15.26130 -14.68648 -14.61496 -14.47290 -14.16999 -13.98502 -13.91832 -13.74067 -13.52261 -13.45849 -13.25221 -12.98412 -12.86661 -12.39714 -12.20804 -12.08804 -12.06240 -11.97790 -11.65895 -11.61941 -11.14080 -10.96290 -10.78853 -10.74280 -9.81500 -9.73329 -5.01836 0.23294 0.87996 1.12584 1.36205 1.44587 1.65338 1.73508 1.91171 1.98118 2.29136 3.09461 3.15613 3.19593 3.30489 3.39211 3.48857 3.54031 3.59433 3.74458 3.84505 3.92354 4.12296 4.15438 4.21519 4.27934 4.28739 4.36502 4.37125 4.50137 4.53270 4.59635 4.63323 4.70359 4.71340 4.75083 4.77925 4.87834 4.92012 5.01111 5.07742 5.24287 5.51032 5.57489 5.82972 6.22596 6.39741 6.93661 7.16812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.496 6.496 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.145 3.855 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.131 4.131 11 C 0.080 3.920 12 N -0.602 5.602 13 C 0.602 3.398 14 O -0.519 6.519 15 C -0.232 4.232 16 C 0.015 3.985 17 O -0.166 6.166 18 C -0.056 4.056 19 C -0.036 4.036 20 O -0.519 6.519 21 Si 0.706 3.294 22 C -0.123 4.123 23 H 0.102 0.898 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.224 0.776 38 H 0.137 0.863 39 H 0.381 0.619 40 H -0.256 1.256 41 H -0.249 1.249 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -3.353 -0.398 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.124 4.124 6 C -0.161 4.161 7 C 0.059 3.941 8 C -0.161 4.161 9 C -0.149 4.149 10 C -0.169 4.169 11 C -0.043 4.043 12 N -0.335 5.335 13 C 0.392 3.608 14 O -0.395 6.395 15 C -0.237 4.237 16 C -0.054 4.054 17 O -0.062 6.062 18 C -0.105 4.105 19 C -0.145 4.145 20 O -0.326 6.326 21 Si 0.604 3.396 22 C -0.143 4.143 23 H 0.120 0.880 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.240 0.760 38 H 0.155 0.845 39 H 0.229 0.771 40 H -0.180 1.180 41 H -0.173 1.173 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.645 -2.489 0.367 8.048 hybrid contribution -1.062 0.477 -1.075 1.585 sum 6.583 -2.012 -0.708 6.920 Atomic orbital electron populations 1.23292 0.76160 1.03793 1.02685 1.86497 1.23570 1.33466 1.84128 1.23415 0.91563 0.81407 0.72376 1.90698 1.66817 1.36379 1.44330 1.22314 0.87822 1.00944 1.01292 1.23309 0.97898 0.99064 0.95801 1.21913 0.94473 0.90100 0.87567 1.23368 0.97584 0.95350 0.99756 1.22460 0.91545 1.02792 0.98079 1.22818 0.99058 0.96994 0.98035 1.22840 0.80271 0.99454 1.01698 1.48101 1.06770 1.45848 1.32782 1.16925 0.85128 0.78861 0.79871 1.90845 1.14700 1.62538 1.71451 1.21458 0.94109 1.07068 1.01058 1.25361 0.98808 0.92878 0.88390 1.83710 1.32148 1.54923 1.35444 1.22689 0.82374 1.05173 1.00230 1.24392 1.03918 0.92773 0.93430 1.86681 1.41106 1.42460 1.62365 0.94483 0.78510 0.85376 0.81201 1.22522 1.00751 0.97411 0.93599 0.87965 0.91817 0.91846 0.85518 0.87984 0.89536 0.89989 0.86916 0.89053 0.89483 0.89955 0.89047 0.89610 0.90379 0.76033 0.84538 0.77082 1.18036 1.17347 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.05 10.56 101.05 1.07 1.11 16 2 O -0.36 -1.22 10.57 -39.24 -0.41 -1.63 16 3 C 0.47 2.08 7.48 36.01 0.27 2.35 16 4 O -0.50 -3.92 15.65 -18.75 -0.29 -4.22 16 5 C -0.10 -0.10 4.06 -90.84 -0.37 -0.47 16 6 C -0.12 -0.09 6.68 -26.10 -0.17 -0.27 16 7 C 0.14 -0.06 1.34 -131.27 -0.18 -0.24 16 8 C -0.12 -0.19 6.54 -26.19 -0.17 -0.36 16 9 C -0.11 0.42 6.08 -25.13 -0.15 0.26 16 10 C -0.13 0.63 7.09 -24.48 -0.17 0.46 16 11 C 0.08 -0.30 5.33 -2.39 -0.01 -0.31 16 12 N -0.60 -0.13 3.17 -157.41 -0.50 -0.63 16 13 C 0.60 2.12 7.50 -12.54 -0.09 2.03 16 14 O -0.52 -3.90 14.18 5.27 0.07 -3.82 16 15 C -0.23 -0.47 6.25 -103.27 -0.65 -1.11 16 16 C 0.02 -0.02 10.48 30.08 0.32 0.30 16 17 O -0.17 0.02 8.89 7.66 0.07 0.08 16 18 C -0.06 -0.04 6.20 -35.74 -0.22 -0.26 16 19 C -0.04 0.02 2.98 36.00 0.11 0.12 16 20 O -0.52 -0.52 12.86 -35.23 -0.45 -0.97 16 21 Si 0.71 -0.96 32.09 -169.99 -5.45 -6.42 16 22 C -0.12 -0.31 10.88 -37.45 -0.41 -0.72 16 23 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 24 H 0.06 0.12 8.13 -51.93 -0.42 -0.30 16 25 H 0.06 0.08 8.13 -51.93 -0.42 -0.34 16 26 H 0.13 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.10 0.41 6.56 -51.93 -0.34 0.07 16 28 H 0.09 -0.11 8.01 -51.93 -0.42 -0.53 16 29 H 0.08 -0.02 8.01 -51.93 -0.42 -0.43 16 30 H 0.11 0.63 5.97 -51.93 -0.31 0.32 16 31 H 0.09 -0.43 7.86 -51.93 -0.41 -0.84 16 32 H 0.09 -0.38 8.01 -51.93 -0.42 -0.80 16 33 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 34 H 0.09 -0.57 8.14 -51.93 -0.42 -0.99 16 35 H 0.09 -0.44 5.33 -51.93 -0.28 -0.71 16 36 H 0.08 -0.38 8.06 -51.93 -0.42 -0.80 16 37 H 0.22 -1.09 4.78 -52.49 -0.25 -1.34 16 38 H 0.14 -0.25 7.96 -51.93 -0.41 -0.66 16 39 H 0.38 -0.69 8.70 45.56 0.40 -0.29 16 40 H -0.26 -0.29 7.11 56.52 0.40 0.11 16 41 H -0.25 -0.34 7.11 56.52 0.40 0.06 16 42 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 LS Contribution 347.19 15.07 5.23 5.23 Total: 0.00 -10.89 347.19 -8.00 -18.89 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -5.42 Total: -9.41 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.84 Total: 2.90 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -0.50 Total: -0.63 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.02 Total: -10.56 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: -5.45 Total: -6.42 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -10.89 -8.00 -18.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.032 kcal (2) G-P(sol) polarization free energy of solvation -10.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds