Wall clock time and date at job start Sun Mar 7 2021 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99920 * 2 1 4 4 O 1.20825 * 120.00303 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99751 * 180.27962 * 3 2 1 6 6 C 1.53898 * 113.59466 * 278.91388 * 5 3 2 7 7 C 1.53321 * 86.83221 * 220.49284 * 6 5 3 8 8 C 1.53135 * 87.76169 * 25.01110 * 7 6 5 9 9 C 1.53737 * 114.69920 * 268.65484 * 7 6 5 10 10 C 1.55292 * 102.73987 * 251.58123 * 9 7 6 11 11 C 1.54971 * 101.66437 * 325.01646 * 10 9 7 12 12 N 1.46379 * 115.40417 * 142.16600 * 7 6 5 13 13 C 1.34780 * 125.79834 * 311.05788 * 12 7 6 14 14 O 1.21605 * 120.00151 * 358.29704 * 13 12 7 15 15 C 1.47376 * 119.99780 * 178.29807 * 13 12 7 16 16 C 1.36419 * 127.19466 * 8.42344 * 15 13 12 17 17 O 1.33651 * 108.39689 * 179.97438 * 16 15 13 18 18 C 1.34212 * 110.91100 * 359.97438 * 17 16 15 19 19 C 1.50697 * 125.44036 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.47105 * 119.97644 * 19 18 17 21 21 Si 1.86303 * 109.47149 * 359.97438 * 19 18 17 22 22 C 1.34181 * 109.12415 * 359.75086 * 18 17 16 23 23 H 1.08999 * 109.47043 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46669 * 300.00104 * 1 2 3 25 25 H 1.08998 * 109.47177 * 60.00020 * 1 2 3 26 26 H 1.08998 * 112.84249 * 50.05447 * 5 3 2 27 27 H 1.08996 * 113.64327 * 334.96211 * 6 5 3 28 28 H 1.08997 * 113.64434 * 105.96525 * 6 5 3 29 29 H 1.08991 * 113.64823 * 220.48497 * 8 7 6 30 30 H 1.09006 * 113.64013 * 89.48575 * 8 7 6 31 31 H 1.09005 * 110.75915 * 9.89368 * 9 7 6 32 32 H 1.09000 * 110.75694 * 133.07941 * 9 7 6 33 33 H 1.08997 * 110.99086 * 83.11026 * 10 9 7 34 34 H 1.09002 * 110.99168 * 206.88237 * 10 9 7 35 35 H 1.09003 * 110.35918 * 155.52767 * 11 10 9 36 36 H 1.09000 * 110.35625 * 277.72347 * 11 10 9 37 37 H 1.08000 * 125.80100 * 359.96393 * 16 15 13 38 38 H 1.08996 * 109.47574 * 239.98171 * 19 18 17 39 39 H 0.96698 * 113.99659 * 300.00933 * 20 19 18 40 40 H 1.48502 * 110.00054 * 58.67605 * 21 19 18 41 41 H 1.48502 * 110.00044 * 179.97438 * 21 19 18 42 42 H 1.08000 * 127.02464 * 180.26238 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0064 6 6 4.1989 1.0857 1.3838 7 6 5.1730 2.2054 0.9990 8 6 4.1079 2.7150 0.0239 9 6 6.4753 1.7250 0.3379 10 6 7.5343 1.9756 1.4457 11 6 6.9968 3.2706 2.1058 12 7 5.5279 3.1277 2.0789 13 6 4.6607 3.7420 2.9078 14 8 3.4644 3.5715 2.7713 15 6 5.1623 4.6204 3.9797 16 6 6.4464 5.0405 4.1684 17 8 6.4792 5.8233 5.2511 18 6 5.2575 5.9417 5.7939 19 6 4.9215 6.7468 7.0227 20 8 3.9634 7.7522 6.6861 21 14 6.4670 7.5557 7.6769 22 6 4.3820 5.2327 5.0650 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.0192 0.6546 -0.7798 27 1 3.5337 1.3485 2.2062 28 1 4.6775 0.1157 1.5180 29 1 4.5135 3.0497 -0.9308 30 1 3.4172 3.4325 0.4669 31 1 6.4158 0.6645 0.0931 32 1 6.6965 2.3136 -0.5524 33 1 7.5544 1.1526 2.1601 34 1 8.5214 2.1381 1.0127 35 1 7.3517 3.3478 3.1336 36 1 7.3051 4.1447 1.5322 37 1 7.2926 4.7840 3.5483 38 1 4.5051 6.0889 7.7855 39 1 4.2671 8.3746 6.0113 40 1 7.0622 8.4307 6.6352 41 1 6.1489 8.3532 8.8886 42 1 3.3214 5.1306 5.2410 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:27 Heat of formation + Delta-G solvation = -82.774065 kcal Electronic energy + Delta-G solvation = -27990.679082 eV Core-core repulsion = 23906.162201 eV Total energy + Delta-G solvation = -4084.516881 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.79969 -42.44844 -41.18993 -39.17974 -38.20833 -37.73174 -36.79663 -34.04067 -32.78725 -31.66724 -29.77419 -28.20297 -27.02359 -26.75299 -26.15023 -24.60571 -23.10050 -22.13736 -21.99785 -21.04355 -19.51391 -18.97770 -18.60206 -18.01882 -17.76216 -17.65499 -17.50687 -17.43699 -16.78125 -16.50398 -15.94858 -15.71425 -15.70324 -15.27803 -14.80440 -14.57470 -14.40625 -14.27085 -14.09055 -13.99049 -13.77970 -13.51617 -13.42789 -13.40570 -12.99441 -12.98388 -12.35891 -12.15607 -12.00122 -11.97727 -11.92681 -11.88162 -11.48119 -11.39084 -11.09961 -10.97225 -10.80307 -9.87407 -9.74128 -4.92858 0.20564 0.75288 1.03119 1.16752 1.46076 1.60141 1.72444 1.90361 1.94330 2.14198 3.14811 3.18426 3.28302 3.32619 3.46474 3.53230 3.55253 3.70464 3.82961 3.90151 4.09408 4.15631 4.18545 4.20099 4.26973 4.37153 4.41129 4.45769 4.50945 4.58715 4.62749 4.65855 4.76601 4.81701 4.85479 4.92843 4.97868 5.07980 5.11785 5.21109 5.26919 5.36616 5.51307 5.77760 6.30576 6.37371 6.61295 7.03050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.543 6.543 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.148 3.852 8 C -0.130 4.130 9 C -0.105 4.105 10 C -0.123 4.123 11 C 0.066 3.934 12 N -0.599 5.599 13 C 0.593 3.407 14 O -0.578 6.578 15 C -0.264 4.264 16 C 0.049 3.951 17 O -0.161 6.161 18 C -0.045 4.045 19 C -0.050 4.050 20 O -0.540 6.540 21 Si 0.799 3.201 22 C -0.156 4.156 23 H 0.135 0.865 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.167 0.833 27 H 0.059 0.941 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.266 0.734 38 H 0.147 0.853 39 H 0.390 0.610 40 H -0.285 1.285 41 H -0.287 1.287 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.082 -4.513 -1.179 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.432 6.432 5 C -0.117 4.117 6 C -0.161 4.161 7 C 0.063 3.937 8 C -0.168 4.168 9 C -0.143 4.143 10 C -0.160 4.160 11 C -0.054 4.054 12 N -0.330 5.330 13 C 0.384 3.616 14 O -0.459 6.459 15 C -0.269 4.269 16 C -0.020 4.020 17 O -0.057 6.057 18 C -0.094 4.094 19 C -0.157 4.157 20 O -0.349 6.349 21 Si 0.701 3.299 22 C -0.176 4.176 23 H 0.153 0.847 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.184 0.816 27 H 0.078 0.922 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.281 0.719 38 H 0.165 0.835 39 H 0.240 0.760 40 H -0.211 1.211 41 H -0.214 1.214 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.456 -3.691 -0.431 12.044 hybrid contribution -2.298 0.847 -0.839 2.589 sum 9.158 -2.844 -1.270 9.673 Atomic orbital electron populations 1.23509 0.75320 1.05698 1.02053 1.86500 1.24571 1.32940 1.83676 1.24250 0.93072 0.80954 0.70875 1.90676 1.68102 1.37855 1.46616 1.22565 0.85373 1.01226 1.02551 1.23240 0.97798 1.00896 0.94184 1.22113 0.95701 0.89035 0.86900 1.23298 0.97815 0.94787 1.00943 1.22551 0.89233 1.03962 0.98521 1.22852 0.99704 0.96018 0.97473 1.23244 0.77486 1.01347 1.03367 1.48211 1.08391 1.44700 1.31739 1.17252 0.84828 0.79041 0.80476 1.90816 1.17253 1.64724 1.73131 1.21462 0.95530 1.08545 1.01326 1.26055 0.98522 0.90233 0.87231 1.83741 1.31444 1.54867 1.35641 1.22739 0.82244 1.04332 1.00051 1.24804 1.04853 0.92919 0.93146 1.86650 1.42319 1.43025 1.62873 0.93429 0.76075 0.82960 0.77427 1.22511 1.00419 0.99310 0.95318 0.84737 0.93076 0.91959 0.81556 0.92211 0.86888 0.88111 0.91804 0.87268 0.88128 0.89890 0.86441 0.88023 0.88352 0.71904 0.83512 0.75957 1.21128 1.21355 0.84287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.36 -2.97 10.57 -51.36 -0.54 -3.51 16 3 C 0.46 5.25 7.48 71.24 0.53 5.78 16 4 O -0.54 -10.84 15.65 21.97 0.34 -10.50 16 5 C -0.10 -0.26 4.06 -10.93 -0.04 -0.30 16 6 C -0.12 -0.30 6.68 31.00 0.21 -0.10 16 7 C 0.15 -0.15 1.34 4.03 0.01 -0.15 16 8 C -0.13 -0.60 6.54 30.94 0.20 -0.40 16 9 C -0.11 1.11 6.08 31.63 0.19 1.31 16 10 C -0.12 1.64 7.09 32.06 0.23 1.86 16 11 C 0.07 -0.67 5.33 86.84 0.46 -0.20 16 12 N -0.60 -0.41 3.17 -770.19 -2.44 -2.85 16 13 C 0.59 5.72 7.50 86.65 0.65 6.37 16 14 O -0.58 -11.65 14.18 -4.05 -0.06 -11.71 16 15 C -0.26 -1.47 6.25 -18.99 -0.12 -1.59 16 16 C 0.05 -0.16 10.48 67.39 0.71 0.55 16 17 O -0.16 0.18 8.89 4.51 0.04 0.23 16 18 C -0.05 -0.10 6.20 24.76 0.15 0.05 16 19 C -0.05 0.01 2.98 71.24 0.21 0.23 16 20 O -0.54 -1.84 12.86 -148.98 -1.92 -3.76 16 21 Si 0.80 -2.45 32.09 68.60 2.20 -0.25 16 22 C -0.16 -1.23 10.88 23.65 0.26 -0.97 16 23 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.05 0.35 8.13 -2.38 -0.02 0.33 16 25 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 26 H 0.17 -0.95 8.14 -2.39 -0.02 -0.97 16 27 H 0.06 0.70 6.56 -2.39 -0.02 0.69 16 28 H 0.11 -0.40 8.01 -2.39 -0.02 -0.42 16 29 H 0.10 -0.03 8.01 -2.39 -0.02 -0.05 16 30 H 0.06 0.99 5.97 -2.38 -0.01 0.98 16 31 H 0.11 -1.47 7.86 -2.38 -0.02 -1.49 16 32 H 0.10 -1.26 8.01 -2.39 -0.02 -1.28 16 33 H 0.08 -1.05 8.14 -2.39 -0.02 -1.07 16 34 H 0.12 -2.07 8.14 -2.39 -0.02 -2.09 16 35 H 0.10 -1.37 5.33 -2.39 -0.01 -1.38 16 36 H 0.10 -1.32 8.06 -2.39 -0.02 -1.34 16 37 H 0.27 -3.47 4.78 -2.91 -0.01 -3.48 16 38 H 0.15 -0.42 7.96 -2.39 -0.02 -0.44 16 39 H 0.39 -0.88 8.70 -74.06 -0.64 -1.53 16 40 H -0.29 -0.51 7.11 99.48 0.71 0.20 16 41 H -0.29 -0.91 7.11 99.48 0.71 -0.20 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 Total: 0.00 -33.60 347.19 2.93 -30.67 By element: Atomic # 1 Polarization: -12.56 SS G_CDS: 0.46 Total: -12.10 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 4.84 Total: 13.77 kcal Atomic # 7 Polarization: -0.41 SS G_CDS: -2.44 Total: -2.85 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -2.13 Total: -29.25 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.20 Total: -0.25 kcal Total: -33.60 2.93 -30.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.102 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds