Wall clock time and date at job start Sun Mar 7 2021 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00267 * 2 1 4 4 O 1.20824 * 120.00058 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00053 * 179.97438 * 3 2 1 6 6 C 1.53897 * 113.59806 * 179.97438 * 5 3 2 7 7 C 1.53142 * 86.89415 * 220.47083 * 6 5 3 8 8 C 1.53136 * 87.73741 * 25.07612 * 7 6 5 9 9 C 1.53782 * 114.73290 * 268.71223 * 7 6 5 10 10 C 1.55306 * 102.71490 * 251.55454 * 9 7 6 11 11 C 1.54968 * 101.69798 * 325.06128 * 10 9 7 12 12 N 1.46387 * 115.35735 * 142.20619 * 7 6 5 13 13 C 1.34775 * 125.79998 * 311.13058 * 12 7 6 14 14 O 1.21286 * 119.99890 * 359.97438 * 13 12 7 15 15 C 1.50694 * 120.00114 * 179.97438 * 13 12 7 16 16 C 1.53543 * 109.81984 * 279.13152 * 15 13 12 17 17 C 1.53032 * 108.56458 * 179.57376 * 16 15 13 18 18 C 1.50204 * 110.36374 * 49.47282 * 17 16 15 19 19 C 1.50699 * 118.54713 * 160.01517 * 18 17 16 20 20 O 1.42899 * 109.47154 * 299.97660 * 19 18 17 21 21 Si 1.86302 * 109.47091 * 179.97438 * 19 18 17 22 22 C 1.31114 * 122.90495 * 339.98922 * 18 17 16 23 23 N 1.38925 * 121.84922 * 0.40868 * 22 18 17 24 24 H 1.09001 * 109.46837 * 59.99672 * 1 2 3 25 25 H 1.08996 * 109.47284 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46829 * 300.00591 * 1 2 3 27 27 H 1.08997 * 112.89126 * 311.19703 * 5 3 2 28 28 H 1.08996 * 113.64455 * 105.96306 * 6 5 3 29 29 H 1.09002 * 113.64137 * 334.96565 * 6 5 3 30 30 H 1.09004 * 113.64317 * 89.42256 * 8 7 6 31 31 H 1.08997 * 113.64658 * 220.42650 * 8 7 6 32 32 H 1.08998 * 110.74843 * 133.26389 * 9 7 6 33 33 H 1.09005 * 110.79206 * 9.86709 * 9 7 6 34 34 H 1.09002 * 110.99103 * 206.94692 * 10 9 7 35 35 H 1.09004 * 110.98737 * 83.17388 * 10 9 7 36 36 H 1.09000 * 110.36198 * 155.50556 * 11 10 9 37 37 H 1.09004 * 110.36350 * 277.81000 * 11 10 9 38 38 H 1.09000 * 109.81958 * 39.99006 * 15 13 12 39 39 H 1.08998 * 109.62394 * 299.23707 * 16 15 13 40 40 H 1.09004 * 109.62407 * 59.78900 * 16 15 13 41 41 H 1.09004 * 109.27576 * 289.22108 * 17 16 15 42 42 H 1.09004 * 109.20342 * 169.67969 * 17 16 15 43 43 H 1.08995 * 109.47576 * 59.97714 * 19 18 17 44 44 H 0.96701 * 114.00055 * 300.00241 * 20 19 18 45 45 H 1.48505 * 109.99688 * 58.67904 * 21 19 18 46 46 H 1.48502 * 109.99865 * 179.97438 * 21 19 18 47 47 H 1.07994 * 119.07485 * 180.38382 * 22 18 17 48 48 H 0.96994 * 120.55822 * 166.66322 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1079 2.7153 -0.0001 7 6 5.1680 2.2277 -0.9919 8 6 4.1920 1.1195 -1.3970 9 6 6.4736 1.7335 -0.3468 10 6 7.4823 2.8560 -0.7136 11 6 6.9885 3.2745 -2.1216 12 7 5.5174 3.1747 -2.0521 13 6 4.6442 3.8425 -2.8319 14 8 3.4514 3.6802 -2.6834 15 6 5.1497 4.7908 -3.8883 16 6 5.5127 6.1382 -3.2477 17 6 6.0317 7.0738 -4.3418 18 6 5.0886 7.0848 -5.5108 19 6 5.1493 8.2420 -6.4742 20 8 4.8766 9.4583 -5.7755 21 14 3.8808 7.9994 -7.8170 22 6 4.2152 6.1319 -5.7303 23 7 4.0951 5.0379 -4.8824 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0241 0.6366 0.7565 28 1 4.5183 3.0285 0.9598 29 1 3.4150 3.4426 -0.4234 30 1 3.5224 1.4021 -2.2095 31 1 4.6698 0.1530 -1.5571 32 1 6.7815 0.7813 -0.7788 33 1 6.3639 1.6510 0.7345 34 1 8.5000 2.4679 -0.7561 35 1 7.4129 3.6877 -0.0123 36 1 7.2893 4.2991 -2.3400 37 1 7.3794 2.5942 -2.8783 38 1 6.0264 4.3660 -4.3772 39 1 4.6273 6.5737 -2.7846 40 1 6.2868 5.9889 -2.4949 41 1 7.0123 6.7315 -4.6726 42 1 6.1188 8.0829 -3.9390 43 1 6.1433 8.2933 -6.9185 44 1 4.0067 9.4833 -5.3540 45 1 2.5243 7.8961 -7.2215 46 1 3.9301 9.1344 -8.7733 47 1 3.5708 6.1994 -6.5943 48 1 3.3283 4.4473 -4.9451 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15736542_15413834.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:39 Heat of formation + Delta-G solvation = -90.901585 kcal Electronic energy + Delta-G solvation = -30900.979224 eV Core-core repulsion = 26730.979472 eV Total energy + Delta-G solvation = -4169.999752 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.177 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55544 -41.23708 -40.34431 -38.90619 -37.53788 -37.36435 -36.65121 -33.46982 -33.18212 -32.39484 -29.74133 -28.17055 -27.63182 -26.99020 -25.57288 -25.22462 -23.93410 -23.32555 -22.29395 -20.94107 -19.73701 -19.19597 -18.77517 -18.59675 -17.92472 -17.72654 -17.37939 -17.01193 -16.96154 -16.23850 -16.14727 -15.89975 -15.81251 -15.50548 -15.25943 -14.81304 -14.64422 -14.60580 -14.31931 -14.15996 -14.03188 -13.88535 -13.82910 -13.33564 -13.25915 -13.14213 -12.98454 -12.76256 -12.48506 -12.33311 -12.21547 -12.16389 -11.95602 -11.89814 -11.68412 -11.66466 -11.64729 -11.25043 -11.18223 -10.66897 -10.29894 -9.78763 -8.47642 -4.88476 1.29010 1.31075 1.41394 1.50286 1.56647 1.66956 1.88928 2.07624 2.55155 3.07247 3.17297 3.29833 3.41454 3.48685 3.52628 3.57068 3.70139 3.81516 3.82808 3.89000 3.96960 4.09227 4.16597 4.21808 4.24071 4.30919 4.31876 4.40324 4.51303 4.52143 4.55909 4.62608 4.66136 4.67497 4.69703 4.71467 4.77766 4.80119 4.92918 4.96540 4.97187 5.02231 5.16248 5.28244 5.44059 5.51689 5.55245 6.20402 6.35988 6.60806 6.79594 6.88457 7.01232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.496 6.496 5 C -0.105 4.105 6 C -0.122 4.122 7 C 0.143 3.857 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.132 4.132 11 C 0.092 3.908 12 N -0.601 5.601 13 C 0.527 3.473 14 O -0.519 6.519 15 C 0.141 3.859 16 C -0.127 4.127 17 C -0.053 4.053 18 C -0.278 4.278 19 C -0.048 4.048 20 O -0.536 6.536 21 Si 0.660 3.340 22 C 0.144 3.856 23 N -0.731 5.731 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.063 0.937 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.373 0.627 45 H -0.264 1.264 46 H -0.261 1.261 47 H 0.134 0.866 48 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -5.429 0.569 8.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.124 4.124 6 C -0.160 4.160 7 C 0.058 3.942 8 C -0.160 4.160 9 C -0.149 4.149 10 C -0.170 4.170 11 C -0.031 4.031 12 N -0.334 5.334 13 C 0.315 3.685 14 O -0.394 6.394 15 C 0.031 3.969 16 C -0.165 4.165 17 C -0.090 4.090 18 C -0.288 4.288 19 C -0.159 4.159 20 O -0.342 6.342 21 Si 0.563 3.437 22 C 0.023 3.977 23 N -0.364 5.364 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.082 0.918 27 H 0.144 0.856 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.220 0.780 45 H -0.189 1.189 46 H -0.186 1.186 47 H 0.150 0.850 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.026 -4.708 0.038 6.887 hybrid contribution -0.995 0.410 0.936 1.427 sum 4.031 -4.298 0.974 5.973 Atomic orbital electron populations 1.23291 0.76137 1.03819 1.02669 1.86501 1.23581 1.33466 1.84108 1.23420 0.91563 0.81406 0.72394 1.90699 1.66816 1.36370 1.44331 1.22316 0.87836 1.01000 1.01263 1.23353 0.97601 0.95364 0.99706 1.21908 0.94502 0.89679 0.88143 1.23273 0.97929 0.99234 0.95582 1.22466 0.91867 0.99025 1.01504 1.22820 0.99546 0.98926 0.95727 1.22560 0.79417 1.02513 0.98597 1.48256 1.07011 1.43124 1.35024 1.20319 0.85907 0.80326 0.81931 1.90768 1.15230 1.64303 1.69114 1.20965 0.91701 0.95302 0.88901 1.21886 1.02372 0.93895 0.98396 1.19939 0.97050 0.99727 0.92279 1.20913 1.06518 0.98596 1.02771 1.24657 1.08410 0.83796 0.99051 1.86558 1.39385 1.37096 1.71118 0.95645 0.78490 0.88846 0.80736 1.20356 0.97729 0.87214 0.92405 1.44289 1.25489 1.30338 1.36241 0.91841 0.87942 0.91843 0.85551 0.90066 0.86868 0.88209 0.89544 0.89491 0.89179 0.89118 0.90134 0.89931 0.90555 0.89154 0.90641 0.90332 0.91455 0.90310 0.87398 0.77966 1.18912 1.18584 0.84954 0.75416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 101.05 1.07 1.10 16 2 O -0.36 -1.03 10.57 -39.25 -0.41 -1.44 16 3 C 0.47 1.78 7.48 36.01 0.27 2.05 16 4 O -0.50 -3.58 15.64 -18.75 -0.29 -3.87 16 5 C -0.10 -0.04 4.07 -90.83 -0.37 -0.41 16 6 C -0.12 -0.11 6.44 -26.19 -0.17 -0.28 16 7 C 0.14 -0.16 1.34 -131.33 -0.18 -0.34 16 8 C -0.12 0.01 6.77 -26.19 -0.18 -0.17 16 9 C -0.11 0.44 6.08 -25.10 -0.15 0.29 16 10 C -0.13 0.62 7.09 -24.47 -0.17 0.45 16 11 C 0.09 -0.35 6.43 -2.39 -0.02 -0.37 16 12 N -0.60 0.57 3.17 -156.22 -0.49 0.08 16 13 C 0.53 0.67 6.77 -10.99 -0.07 0.60 16 14 O -0.52 -2.58 13.26 5.55 0.07 -2.50 16 15 C 0.14 -0.05 2.61 -68.52 -0.18 -0.23 16 16 C -0.13 0.07 5.37 -26.43 -0.14 -0.07 16 17 C -0.05 0.02 5.83 -28.11 -0.16 -0.15 16 18 C -0.28 -0.06 5.45 -101.34 -0.55 -0.61 16 19 C -0.05 -0.02 2.83 36.01 0.10 0.08 16 20 O -0.54 -1.19 12.54 -35.23 -0.44 -1.63 16 21 Si 0.66 -0.02 29.68 -169.99 -5.05 -5.06 16 22 C 0.14 0.00 9.63 -16.08 -0.15 -0.15 16 23 N -0.73 -0.34 5.47 -55.35 -0.30 -0.64 16 24 H 0.06 0.08 8.13 -51.93 -0.42 -0.34 16 25 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 26 H 0.06 0.06 8.13 -51.93 -0.42 -0.37 16 27 H 0.13 -0.29 8.14 -51.93 -0.42 -0.71 16 28 H 0.08 -0.05 8.01 -51.93 -0.42 -0.46 16 29 H 0.11 0.53 5.82 -51.93 -0.30 0.23 16 30 H 0.10 0.28 6.68 -51.93 -0.35 -0.07 16 31 H 0.09 -0.16 8.01 -51.93 -0.42 -0.58 16 32 H 0.09 -0.41 8.01 -51.93 -0.42 -0.83 16 33 H 0.09 -0.42 7.86 -51.93 -0.41 -0.83 16 34 H 0.09 -0.53 8.14 -51.93 -0.42 -0.96 16 35 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 36 H 0.08 -0.39 6.15 -51.93 -0.32 -0.71 16 37 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.09 -0.17 7.70 -51.93 -0.40 -0.57 16 39 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 -0.17 6.64 -51.93 -0.35 -0.52 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 42 H 0.08 0.05 7.83 -51.93 -0.41 -0.36 16 43 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 44 H 0.37 -0.08 8.70 45.56 0.40 0.32 16 45 H -0.26 -0.60 7.10 56.52 0.40 -0.20 16 46 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 47 H 0.13 -0.18 4.37 -52.49 -0.23 -0.41 16 48 H 0.41 0.34 8.10 -40.82 -0.33 0.01 16 LS Contribution 374.39 15.07 5.64 5.64 Total: 0.00 -9.21 374.39 -9.69 -18.90 By element: Atomic # 1 Polarization: -3.90 SS G_CDS: -7.35 Total: -11.25 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.06 Total: 1.78 kcal Atomic # 7 Polarization: 0.24 SS G_CDS: -0.80 Total: -0.56 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.08 Total: -9.44 kcal Atomic # 14 Polarization: -0.02 SS G_CDS: -5.05 Total: -5.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -9.21 -9.69 -18.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_15413834.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.001 kcal (2) G-P(sol) polarization free energy of solvation -9.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds