Wall clock time and date at job start Sun Mar 7 2021 03:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53899 * 113.59596 * 279.19659 * 5 3 2 7 7 C 1.53315 * 86.83253 * 220.49086 * 6 5 3 8 8 C 1.53134 * 87.75925 * 25.01052 * 7 6 5 9 9 C 1.53740 * 114.69653 * 268.65759 * 7 6 5 10 10 C 1.55304 * 102.73562 * 251.57672 * 9 7 6 11 11 C 1.54970 * 101.66399 * 325.01831 * 10 9 7 12 12 N 1.46378 * 115.40652 * 142.16167 * 7 6 5 13 13 C 1.34771 * 125.80072 * 311.05703 * 12 7 6 14 14 O 1.21283 * 120.00300 * 0.02562 * 13 12 7 15 15 C 1.50702 * 120.00326 * 179.97438 * 13 12 7 16 16 O 1.42901 * 109.47425 * 180.02562 * 15 13 12 17 17 C 1.35905 * 116.99982 * 180.02562 * 16 15 13 18 18 C 1.38709 * 120.05380 * 179.72372 * 17 16 15 19 19 C 1.50696 * 120.02764 * 359.97438 * 18 17 16 20 20 O 1.42901 * 109.47024 * 75.00345 * 19 18 17 21 21 Si 1.86299 * 109.46980 * 194.99685 * 19 18 17 22 22 C 1.38165 * 119.94040 * 179.67525 * 18 17 16 23 23 C 1.38249 * 120.05822 * 0.61848 * 22 18 17 24 24 C 1.38292 * 120.10928 * 359.67851 * 23 22 18 25 25 C 1.38128 * 120.05307 * 0.02562 * 24 23 22 26 26 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.08997 * 112.83549 * 50.33146 * 5 3 2 30 30 H 1.09003 * 113.63917 * 334.95953 * 6 5 3 31 31 H 1.08998 * 113.65031 * 105.96079 * 6 5 3 32 32 H 1.09007 * 113.64846 * 220.48724 * 8 7 6 33 33 H 1.09007 * 113.64655 * 89.49003 * 8 7 6 34 34 H 1.08997 * 110.76125 * 9.88666 * 9 7 6 35 35 H 1.09000 * 110.76188 * 133.07964 * 9 7 6 36 36 H 1.08999 * 110.98801 * 83.11076 * 10 9 7 37 37 H 1.08999 * 110.99036 * 206.88389 * 10 9 7 38 38 H 1.08998 * 110.36439 * 155.52736 * 11 10 9 39 39 H 1.09003 * 110.35896 * 277.72542 * 11 10 9 40 40 H 1.09005 * 109.46863 * 300.00025 * 15 13 12 41 41 H 1.08997 * 109.46999 * 59.99464 * 15 13 12 42 42 H 1.08998 * 109.47532 * 315.00197 * 19 18 17 43 43 H 0.96692 * 114.00451 * 59.99962 * 20 19 18 44 44 H 1.48505 * 110.00123 * 58.68257 * 21 19 18 45 45 H 1.48501 * 109.99900 * 179.97438 * 21 19 18 46 46 H 1.07996 * 119.97389 * 180.31951 * 22 18 17 47 47 H 1.07994 * 119.94973 * 179.69723 * 23 22 18 48 48 H 1.07997 * 119.97258 * 180.02562 * 24 23 22 49 49 H 1.08001 * 120.02712 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0824 1.3931 7 6 5.1685 2.2030 1.0154 8 6 4.1077 2.7150 0.0369 9 6 6.4736 1.7242 0.3590 10 6 7.5278 1.9722 1.4721 11 6 6.9873 3.2655 2.1330 12 7 5.5184 3.1227 2.0991 13 6 4.6476 3.7350 2.9256 14 8 3.4567 3.5407 2.8036 15 6 5.1536 4.6602 4.0022 16 8 4.0471 5.1814 4.7412 17 6 4.3322 6.0393 5.7560 18 6 3.3059 6.5875 6.5111 19 6 1.8733 6.2330 6.2067 20 8 1.5993 4.9117 6.6770 21 14 0.7400 7.4423 7.0575 22 6 3.5987 7.4541 7.5466 23 6 4.9125 7.7849 7.8222 24 6 5.9371 7.2445 7.0669 25 6 5.6499 6.3728 6.0345 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 4.0226 0.6566 -0.7724 30 1 3.5237 1.3432 2.2132 31 1 4.6708 0.1120 1.5271 32 1 4.5176 3.0521 -0.9153 33 1 3.4149 3.4315 0.4785 34 1 6.4154 0.6644 0.1113 35 1 6.6989 2.3150 -0.5289 36 1 7.5447 1.1474 2.1845 37 1 8.5167 2.1358 1.0439 38 1 7.3375 3.3403 3.1625 39 1 7.2981 4.1411 1.5629 40 1 5.8121 4.1098 4.6743 41 1 5.7053 5.4818 3.5453 42 1 1.7090 6.2767 5.1301 43 1 1.7249 4.7992 7.6291 44 1 1.0364 8.8239 6.6007 45 1 -0.6760 7.1039 6.7646 46 1 2.8004 7.8773 8.1382 47 1 5.1391 8.4663 8.6288 48 1 6.9626 7.5041 7.2843 49 1 6.4504 5.9507 5.4452 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:35:49 Heat of formation + Delta-G solvation = -116.281107 kcal Electronic energy + Delta-G solvation = -33630.062387 eV Core-core repulsion = 29104.791153 eV Total energy + Delta-G solvation = -4525.271234 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.165 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.57161 -41.59809 -41.12545 -39.54149 -38.37182 -37.75548 -37.52331 -36.74646 -33.00557 -32.66720 -31.24387 -29.98833 -29.22327 -28.06371 -27.06756 -26.72200 -25.43934 -24.01474 -23.17071 -22.61456 -22.15399 -20.97979 -19.73213 -19.24386 -18.81389 -18.18648 -18.02376 -17.80880 -17.64121 -17.51617 -16.98192 -16.85372 -16.47884 -16.27275 -15.93956 -15.63783 -15.34759 -15.24880 -15.04192 -14.85602 -14.54538 -14.32277 -14.26617 -14.13164 -13.97584 -13.75198 -13.58785 -13.42923 -13.33405 -13.06522 -12.98499 -12.42460 -12.36740 -12.23590 -12.17191 -12.10856 -12.01837 -11.96094 -11.94470 -11.80056 -11.50967 -11.42362 -10.88675 -10.42906 -9.98497 -9.81024 -9.25048 -5.10842 0.21920 0.39266 0.98961 1.23573 1.28498 1.32897 1.57652 1.66143 1.91452 2.42679 2.68969 3.11491 3.22119 3.28025 3.48489 3.49413 3.51616 3.69559 3.73122 3.79049 3.87124 3.91847 3.92708 4.05541 4.10369 4.15517 4.16847 4.18829 4.27807 4.33215 4.36731 4.49295 4.50159 4.56178 4.60438 4.61569 4.67727 4.74422 4.81584 4.89659 4.93554 4.95512 5.06422 5.16563 5.23486 5.26461 5.32990 5.36369 5.44739 5.51018 5.75673 6.23190 6.35054 6.57630 6.77038 6.94545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.544 6.544 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.149 3.851 8 C -0.130 4.130 9 C -0.104 4.104 10 C -0.124 4.124 11 C 0.082 3.918 12 N -0.601 5.601 13 C 0.520 3.480 14 O -0.561 6.561 15 C 0.046 3.954 16 O -0.317 6.317 17 C 0.123 3.877 18 C -0.173 4.173 19 C -0.077 4.077 20 O -0.558 6.558 21 Si 0.801 3.199 22 C -0.078 4.078 23 C -0.152 4.152 24 C -0.074 4.074 25 C -0.213 4.213 26 H 0.136 0.864 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.168 0.832 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.391 0.609 44 H -0.280 1.280 45 H -0.305 1.305 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.156 0.844 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.726 -1.433 2.728 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.433 6.433 5 C -0.117 4.117 6 C -0.162 4.162 7 C 0.063 3.937 8 C -0.168 4.168 9 C -0.142 4.142 10 C -0.162 4.162 11 C -0.038 4.038 12 N -0.335 5.335 13 C 0.308 3.692 14 O -0.439 6.439 15 C -0.032 4.032 16 O -0.230 6.230 17 C 0.077 3.923 18 C -0.174 4.174 19 C -0.185 4.185 20 O -0.366 6.366 21 Si 0.705 3.295 22 C -0.095 4.095 23 C -0.170 4.170 24 C -0.092 4.092 25 C -0.232 4.232 26 H 0.154 0.846 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.185 0.815 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.240 0.760 44 H -0.206 1.206 45 H -0.234 1.234 46 H 0.175 0.825 47 H 0.175 0.825 48 H 0.174 0.826 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.906 -0.770 1.936 11.104 hybrid contribution -0.707 -0.042 -0.834 1.094 sum 10.199 -0.812 1.101 10.291 Atomic orbital electron populations 1.23508 0.75322 1.05735 1.01999 1.86497 1.24567 1.32904 1.83673 1.24264 0.93100 0.80967 0.70873 1.90678 1.68121 1.37889 1.46617 1.22567 0.85374 1.01214 1.02557 1.23245 0.97833 1.00935 0.94161 1.22111 0.95670 0.89062 0.86832 1.23288 0.97805 0.94767 1.00976 1.22541 0.89216 1.03936 0.98495 1.22843 0.99594 0.96312 0.97455 1.22879 0.76700 1.00612 1.03646 1.48309 1.08586 1.44928 1.31641 1.20255 0.85623 0.80946 0.82354 1.90802 1.17820 1.63543 1.71763 1.22620 0.88918 0.98198 0.93468 1.86195 1.34271 1.58826 1.43751 1.19157 0.94304 0.90597 0.88208 1.19852 0.94711 1.03015 0.99782 1.25242 0.97944 0.92833 1.02463 1.86547 1.90960 1.29191 1.29866 0.94083 0.73797 0.73544 0.88040 1.21119 0.98506 0.95174 0.94707 1.21477 0.91739 1.01961 1.01799 1.21429 1.01116 0.93766 0.92870 1.21570 0.94251 1.04301 1.03053 0.84629 0.93238 0.91924 0.81486 0.92273 0.86876 0.88034 0.92002 0.87275 0.88194 0.89968 0.86846 0.88447 0.89186 0.86288 0.86631 0.90936 0.76015 1.20619 1.23353 0.82456 0.82498 0.82595 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.36 16 2 O -0.36 -3.46 10.57 -51.46 -0.54 -4.01 16 3 C 0.46 5.93 7.48 71.24 0.53 6.46 16 4 O -0.54 -11.76 15.65 21.98 0.34 -11.41 16 5 C -0.10 -0.38 4.06 -10.94 -0.04 -0.42 16 6 C -0.12 -0.46 6.68 31.00 0.21 -0.25 16 7 C 0.15 -0.01 1.34 4.02 0.01 -0.01 16 8 C -0.13 -0.74 6.54 30.94 0.20 -0.53 16 9 C -0.10 0.98 6.08 31.63 0.19 1.18 16 10 C -0.12 1.48 7.09 32.06 0.23 1.70 16 11 C 0.08 -0.74 6.71 86.84 0.58 -0.15 16 12 N -0.60 -0.58 3.17 -766.33 -2.43 -3.01 16 13 C 0.52 4.79 7.59 87.66 0.67 5.45 16 14 O -0.56 -12.08 13.69 16.00 0.22 -11.86 16 15 C 0.05 0.14 4.24 71.24 0.30 0.44 16 16 O -0.32 -3.89 9.00 -73.44 -0.66 -4.55 16 17 C 0.12 0.90 6.66 22.51 0.15 1.05 16 18 C -0.17 -1.12 5.27 -19.77 -0.10 -1.22 16 19 C -0.08 -0.74 2.38 71.23 0.17 -0.57 16 20 O -0.56 -6.26 12.88 -148.98 -1.92 -8.18 16 21 Si 0.80 2.76 29.92 68.60 2.05 4.81 16 22 C -0.08 0.01 8.66 22.25 0.19 0.20 16 23 C -0.15 0.45 10.04 22.29 0.22 0.67 16 24 C -0.07 0.22 10.04 22.26 0.22 0.44 16 25 C -0.21 -0.03 9.04 22.37 0.20 0.17 16 26 H 0.14 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.05 0.43 8.13 -2.39 -0.02 0.41 16 28 H 0.06 0.36 8.13 -2.39 -0.02 0.34 16 29 H 0.17 -0.77 8.14 -2.39 -0.02 -0.79 16 30 H 0.06 0.79 6.50 -2.39 -0.02 0.78 16 31 H 0.11 -0.27 8.01 -2.39 -0.02 -0.29 16 32 H 0.10 0.07 8.01 -2.38 -0.02 0.05 16 33 H 0.06 1.04 6.03 -2.38 -0.01 1.02 16 34 H 0.11 -1.35 7.85 -2.39 -0.02 -1.37 16 35 H 0.10 -1.13 8.01 -2.39 -0.02 -1.15 16 36 H 0.08 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.11 -1.77 8.14 -2.39 -0.02 -1.79 16 38 H 0.10 -1.21 7.50 -2.39 -0.02 -1.23 16 39 H 0.09 -1.01 8.14 -2.39 -0.02 -1.02 16 40 H 0.12 -0.41 7.38 -2.38 -0.02 -0.43 16 41 H 0.12 -0.34 7.66 -2.39 -0.02 -0.36 16 42 H 0.07 1.21 7.83 -2.39 -0.02 1.19 16 43 H 0.39 0.28 8.70 -74.06 -0.64 -0.37 16 44 H -0.28 -1.95 7.11 99.48 0.71 -1.24 16 45 H -0.30 -3.54 7.11 99.48 0.71 -2.83 16 46 H 0.16 -0.92 5.14 -2.91 -0.01 -0.93 16 47 H 0.16 -1.33 8.06 -2.91 -0.02 -1.35 16 48 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 49 H 0.15 -0.87 6.30 -2.91 -0.02 -0.89 16 Total: 0.00 -39.61 397.56 2.57 -37.04 By element: Atomic # 1 Polarization: -15.18 SS G_CDS: 0.38 Total: -14.81 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 5.13 Total: 15.97 kcal Atomic # 7 Polarization: -0.58 SS G_CDS: -2.43 Total: -3.01 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -2.56 Total: -40.02 kcal Atomic # 14 Polarization: 2.76 SS G_CDS: 2.05 Total: 4.81 kcal Total: -39.61 2.57 -37.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.242 kcal (2) G-P(sol) polarization free energy of solvation -39.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds