Wall clock time and date at job start Sun Mar 7 2021 03:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53899 * 113.59596 * 279.19659 * 5 3 2 7 7 C 1.53315 * 86.83253 * 220.49086 * 6 5 3 8 8 C 1.53134 * 87.75925 * 25.01052 * 7 6 5 9 9 C 1.53740 * 114.69653 * 268.65759 * 7 6 5 10 10 C 1.55304 * 102.73562 * 251.57672 * 9 7 6 11 11 C 1.54970 * 101.66399 * 325.01831 * 10 9 7 12 12 N 1.46378 * 115.40652 * 142.16167 * 7 6 5 13 13 C 1.34778 * 125.79908 * 311.07947 * 12 7 6 14 14 O 1.21277 * 120.00313 * 359.97438 * 13 12 7 15 15 C 1.50702 * 119.99596 * 180.02562 * 13 12 7 16 16 C 1.53008 * 109.46802 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46966 * 179.97438 * 16 15 13 18 18 O 1.42895 * 109.47122 * 179.97438 * 17 16 15 19 19 C 1.35898 * 117.00239 * 180.02562 * 18 17 16 20 20 C 1.38711 * 120.05682 * 180.02562 * 19 18 17 21 21 C 1.38167 * 119.94572 * 180.02562 * 20 19 18 22 22 C 1.50702 * 119.97524 * 180.02562 * 21 20 19 23 23 O 1.42897 * 109.46898 * 65.00041 * 22 21 20 24 24 Si 1.86294 * 109.47290 * 185.00259 * 22 21 20 25 25 C 1.38247 * 120.05351 * 0.02562 * 21 20 19 26 26 C 1.38286 * 120.11434 * 0.02562 * 25 21 20 27 27 C 1.38126 * 120.05144 * 359.68132 * 26 25 21 28 28 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 29 29 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 31 31 H 1.08997 * 112.83549 * 50.33146 * 5 3 2 32 32 H 1.09003 * 113.63917 * 334.95953 * 6 5 3 33 33 H 1.08998 * 113.65031 * 105.96079 * 6 5 3 34 34 H 1.09007 * 113.64846 * 220.48724 * 8 7 6 35 35 H 1.09007 * 113.64655 * 89.49003 * 8 7 6 36 36 H 1.08997 * 110.76125 * 9.88666 * 9 7 6 37 37 H 1.09000 * 110.76188 * 133.07964 * 9 7 6 38 38 H 1.08999 * 110.98801 * 83.11076 * 10 9 7 39 39 H 1.08997 * 110.99200 * 206.91989 * 10 9 7 40 40 H 1.08998 * 110.36439 * 155.52736 * 11 10 9 41 41 H 1.09003 * 110.35896 * 277.72542 * 11 10 9 42 42 H 1.09005 * 109.46860 * 299.99427 * 15 13 12 43 43 H 1.08992 * 109.47654 * 60.00054 * 15 13 12 44 44 H 1.08996 * 109.46552 * 299.99822 * 16 15 13 45 45 H 1.08992 * 109.47079 * 59.99571 * 16 15 13 46 46 H 1.08997 * 109.47234 * 300.00178 * 17 16 15 47 47 H 1.09005 * 109.47007 * 60.00148 * 17 16 15 48 48 H 1.08002 * 120.02848 * 359.97438 * 20 19 18 49 49 H 1.08998 * 109.47157 * 305.00249 * 22 21 20 50 50 H 0.96699 * 114.00066 * 179.97438 * 23 22 21 51 51 H 1.48497 * 110.00292 * 178.68296 * 24 22 21 52 52 H 1.48511 * 109.99941 * 300.00117 * 24 22 21 53 53 H 1.08002 * 119.94509 * 179.97438 * 25 21 20 54 54 H 1.07991 * 119.97726 * 179.97438 * 26 25 21 55 55 H 1.08001 * 120.02741 * 180.31962 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0824 1.3931 7 6 5.1685 2.2030 1.0154 8 6 4.1077 2.7150 0.0369 9 6 6.4736 1.7242 0.3590 10 6 7.5278 1.9722 1.4721 11 6 6.9873 3.2655 2.1330 12 7 5.5184 3.1227 2.0991 13 6 4.6476 3.7347 2.9259 14 8 3.4567 3.5407 2.8036 15 6 5.1536 4.6608 4.0017 16 6 3.9689 5.2183 4.7934 17 6 4.4827 6.1581 5.8860 18 8 3.3763 6.6791 6.6251 19 6 3.6613 7.5373 7.6396 20 6 2.6354 8.0807 8.3988 21 6 2.9277 8.9533 9.4293 22 6 1.8137 9.5436 10.2550 23 8 1.1558 8.5030 10.9805 24 14 2.5184 10.7853 11.4517 25 6 4.2414 9.2855 9.7037 26 6 5.2659 8.7460 8.9476 27 6 4.9792 7.8685 7.9202 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.0226 0.6566 -0.7724 32 1 3.5237 1.3432 2.2132 33 1 4.6708 0.1120 1.5271 34 1 4.5176 3.0521 -0.9153 35 1 3.4149 3.4315 0.4785 36 1 6.4154 0.6644 0.1113 37 1 6.6989 2.3150 -0.5289 38 1 7.5447 1.1474 2.1845 39 1 8.5166 2.1364 1.0439 40 1 7.3375 3.3403 3.1625 41 1 7.2981 4.1411 1.5629 42 1 5.8129 4.1113 4.6736 43 1 5.7042 5.4827 3.5441 44 1 3.3094 5.7676 4.1217 45 1 3.4187 4.3962 5.2510 46 1 5.1422 5.6084 6.5576 47 1 5.0332 6.9803 5.4287 48 1 1.6090 7.8224 8.1841 49 1 1.0975 10.0376 9.5985 50 1 0.4262 8.8111 11.5353 51 1 1.4264 11.3978 12.2500 52 1 3.4966 10.1241 12.3525 53 1 4.4678 9.9682 10.5094 54 1 6.2912 9.0074 9.1636 55 1 5.7800 7.4434 7.3333 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:36:04 Heat of formation + Delta-G solvation = -130.085783 kcal Electronic energy + Delta-G solvation = -36007.439435 eV Core-core repulsion = 31170.494348 eV Total energy + Delta-G solvation = -4836.945088 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.197 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.47640 -41.32424 -41.18098 -39.52281 -39.06228 -37.71772 -37.49546 -36.65941 -34.88118 -32.65169 -32.60768 -31.23377 -29.81378 -28.45540 -27.96293 -27.01220 -26.84448 -25.35145 -24.02236 -23.66817 -22.98860 -22.01967 -21.71809 -20.75326 -19.40756 -18.91481 -18.76868 -18.60385 -18.03359 -17.78599 -17.53829 -17.48448 -17.30243 -16.99037 -16.87438 -16.32417 -15.95781 -15.83188 -15.61795 -15.49851 -14.85119 -14.75878 -14.55148 -14.53570 -14.38191 -14.21836 -14.04188 -13.95841 -13.70577 -13.57556 -13.42703 -13.41903 -13.25656 -13.20932 -12.95987 -12.70046 -12.43508 -12.32335 -12.24760 -12.06533 -11.97057 -11.94342 -11.93075 -11.89706 -11.68286 -11.62418 -11.46258 -11.37658 -10.77551 -10.56562 -9.92804 -9.66899 -9.26309 -4.93171 0.19690 0.39401 1.02644 1.26444 1.54310 1.59841 1.60670 1.85893 1.93389 2.26995 2.62405 3.19303 3.30330 3.36073 3.38865 3.54790 3.59021 3.73597 3.77794 3.82846 3.84018 3.91987 3.94625 4.07559 4.10556 4.14021 4.18193 4.19662 4.22493 4.25031 4.31584 4.32118 4.36282 4.43534 4.49129 4.52829 4.56080 4.59777 4.65806 4.67316 4.76634 4.80389 4.88367 4.92874 4.96616 4.97597 5.00734 5.09930 5.12531 5.20686 5.26118 5.26573 5.36714 5.36896 5.45559 5.54531 5.72412 6.40745 6.50185 6.54189 6.60797 7.13272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.541 6.541 5 C -0.101 4.101 6 C -0.122 4.122 7 C 0.146 3.854 8 C -0.127 4.127 9 C -0.106 4.106 10 C -0.127 4.127 11 C 0.088 3.912 12 N -0.607 5.607 13 C 0.517 3.483 14 O -0.580 6.580 15 C -0.121 4.121 16 C -0.100 4.100 17 C 0.060 3.940 18 O -0.340 6.340 19 C 0.115 3.885 20 C -0.154 4.154 21 C -0.048 4.048 22 C -0.098 4.098 23 O -0.560 6.560 24 Si 0.781 3.219 25 C -0.163 4.163 26 C -0.071 4.071 27 C -0.205 4.205 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.051 0.949 31 H 0.163 0.837 32 H 0.063 0.937 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.115 0.885 49 H 0.089 0.911 50 H 0.395 0.605 51 H -0.286 1.286 52 H -0.293 1.293 53 H 0.145 0.855 54 H 0.162 0.838 55 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.042 0.142 -2.137 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.431 6.431 5 C -0.120 4.120 6 C -0.160 4.160 7 C 0.060 3.940 8 C -0.166 4.166 9 C -0.144 4.144 10 C -0.165 4.165 11 C -0.033 4.033 12 N -0.339 5.339 13 C 0.308 3.692 14 O -0.459 6.459 15 C -0.161 4.161 16 C -0.138 4.138 17 C -0.015 4.015 18 O -0.254 6.254 19 C 0.070 3.930 20 C -0.173 4.173 21 C -0.048 4.048 22 C -0.205 4.205 23 O -0.370 6.370 24 Si 0.686 3.314 25 C -0.180 4.180 26 C -0.089 4.089 27 C -0.223 4.223 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.180 0.820 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.133 0.867 49 H 0.107 0.893 50 H 0.245 0.755 51 H -0.213 1.213 52 H -0.220 1.220 53 H 0.162 0.838 54 H 0.180 0.820 55 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.489 0.163 -1.694 11.615 hybrid contribution -2.299 -0.631 0.410 2.419 sum 9.191 -0.468 -1.284 9.292 Atomic orbital electron populations 1.23508 0.75290 1.05699 1.02081 1.86502 1.24609 1.33032 1.83701 1.24235 0.93026 0.80950 0.70895 1.90671 1.68061 1.37781 1.46573 1.22569 0.85429 1.01402 1.02578 1.23231 0.97886 1.00778 0.94145 1.22022 0.95279 0.89368 0.87345 1.23272 0.97846 0.94621 1.00858 1.22518 0.89748 1.03612 0.98520 1.22842 0.99464 0.96707 0.97459 1.22755 0.77144 0.99885 1.03489 1.48490 1.08632 1.44991 1.31777 1.20919 0.85295 0.80630 0.82388 1.90763 1.17974 1.64577 1.72620 1.21513 0.98808 0.99700 0.96049 1.21133 0.98079 0.98458 0.96153 1.22972 0.87757 0.97599 0.93123 1.86050 1.37103 1.58578 1.43694 1.19187 0.94211 0.90952 0.88634 1.20337 0.98546 1.00777 0.97595 1.19274 0.94365 0.96658 0.94508 1.25242 0.97329 0.96802 1.01124 1.86555 1.51978 1.35069 1.63439 0.93909 0.79074 0.80281 0.78181 1.21187 0.91687 1.03058 1.02102 1.21302 1.00614 0.94037 0.92943 1.21611 0.94843 1.03427 1.02434 0.91942 0.84773 0.93023 0.81992 0.91846 0.87412 0.88455 0.91519 0.87787 0.88504 0.90218 0.87284 0.88358 0.89578 0.85613 0.85690 0.92494 0.92538 0.89834 0.89526 0.86667 0.89260 0.75488 1.21298 1.22044 0.83781 0.82003 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.36 -3.08 10.57 -51.46 -0.54 -3.62 16 3 C 0.46 5.26 7.48 71.24 0.53 5.79 16 4 O -0.54 -10.60 15.65 21.98 0.34 -10.26 16 5 C -0.10 -0.29 4.06 -10.94 -0.04 -0.34 16 6 C -0.12 -0.30 6.68 31.00 0.21 -0.09 16 7 C 0.15 -0.17 1.34 4.02 0.01 -0.16 16 8 C -0.13 -0.55 6.54 30.94 0.20 -0.35 16 9 C -0.11 0.99 6.08 31.63 0.19 1.19 16 10 C -0.13 1.50 7.09 32.06 0.23 1.72 16 11 C 0.09 -0.86 6.71 86.84 0.58 -0.28 16 12 N -0.61 0.64 3.17 -766.33 -2.43 -1.79 16 13 C 0.52 2.44 7.51 87.66 0.66 3.10 16 14 O -0.58 -9.15 13.17 -3.02 -0.04 -9.19 16 15 C -0.12 0.43 4.72 29.85 0.14 0.57 16 16 C -0.10 -0.30 4.87 30.60 0.15 -0.15 16 17 C 0.06 -0.01 4.74 71.98 0.34 0.33 16 18 O -0.34 -2.94 10.14 -92.40 -0.94 -3.88 16 19 C 0.12 0.87 6.69 22.51 0.15 1.02 16 20 C -0.15 -1.46 9.62 22.37 0.22 -1.25 16 21 C -0.05 -0.29 5.38 -19.88 -0.11 -0.40 16 22 C -0.10 -0.29 2.79 71.24 0.20 -0.09 16 23 O -0.56 -3.44 12.81 -148.98 -1.91 -5.35 16 24 Si 0.78 -0.63 29.85 68.60 2.05 1.42 16 25 C -0.16 -0.37 8.67 22.28 0.19 -0.18 16 26 C -0.07 0.02 10.04 22.25 0.22 0.24 16 27 C -0.20 -0.30 9.04 22.37 0.20 -0.10 16 28 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 29 H 0.13 -0.33 8.14 -2.38 -0.02 -0.35 16 30 H 0.05 0.35 8.13 -2.39 -0.02 0.33 16 31 H 0.16 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.06 0.70 6.50 -2.39 -0.02 0.68 16 33 H 0.11 -0.31 8.01 -2.39 -0.02 -0.33 16 34 H 0.10 0.00 8.01 -2.38 -0.02 -0.02 16 35 H 0.07 0.96 6.03 -2.38 -0.01 0.94 16 36 H 0.10 -1.23 7.85 -2.39 -0.02 -1.25 16 37 H 0.10 -1.06 8.01 -2.39 -0.02 -1.08 16 38 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.11 -1.64 8.14 -2.39 -0.02 -1.66 16 40 H 0.10 -1.30 7.50 -2.39 -0.02 -1.32 16 41 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.13 -1.16 7.86 -2.38 -0.02 -1.18 16 43 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 44 H 0.06 0.47 8.10 -2.39 -0.02 0.45 16 45 H 0.06 0.45 8.10 -2.39 -0.02 0.44 16 46 H 0.08 -0.35 7.65 -2.39 -0.02 -0.37 16 47 H 0.09 -0.40 7.67 -2.38 -0.02 -0.42 16 48 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 49 H 0.09 -0.01 7.96 -2.39 -0.02 -0.03 16 50 H 0.39 -0.97 8.74 -74.06 -0.65 -1.62 16 51 H -0.29 -0.88 7.11 99.48 0.71 -0.17 16 52 H -0.29 -1.60 7.05 99.48 0.70 -0.90 16 53 H 0.14 -0.27 4.86 -2.91 -0.01 -0.28 16 54 H 0.16 -1.11 8.06 -2.92 -0.02 -1.14 16 55 H 0.16 -0.74 6.30 -2.91 -0.02 -0.75 16 Total: 0.00 -35.40 440.51 2.29 -33.11 By element: Atomic # 1 Polarization: -12.62 SS G_CDS: 0.29 Total: -12.33 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.47 Total: 11.89 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -2.43 Total: -1.79 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -3.08 Total: -32.30 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.05 Total: 1.42 kcal Total: -35.40 2.29 -33.11 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.975 kcal (2) G-P(sol) polarization free energy of solvation -35.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds