Wall clock time and date at job start Sun Mar 7 2021 03:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53899 * 113.59596 * 279.19659 * 5 3 2 7 7 C 1.53315 * 86.83253 * 220.49086 * 6 5 3 8 8 C 1.53134 * 87.75925 * 25.01052 * 7 6 5 9 9 C 1.53740 * 114.69653 * 268.65759 * 7 6 5 10 10 C 1.55304 * 102.73562 * 251.57672 * 9 7 6 11 11 C 1.54970 * 101.66399 * 325.01831 * 10 9 7 12 12 N 1.46378 * 115.40652 * 142.16167 * 7 6 5 13 13 C 1.34771 * 125.80072 * 311.05703 * 12 7 6 14 14 O 1.21283 * 120.00300 * 0.02562 * 13 12 7 15 15 C 1.50702 * 120.00326 * 179.97438 * 13 12 7 16 16 O 1.42901 * 109.47425 * 180.02562 * 15 13 12 17 17 C 1.35997 * 116.99984 * 180.02562 * 16 15 13 18 18 C 1.39153 * 120.07225 * 179.72183 * 17 16 15 19 19 O 1.35995 * 120.07063 * 0.02562 * 18 17 16 20 20 C 1.42903 * 116.99721 * 180.02562 * 19 18 17 21 21 C 1.38566 * 119.85258 * 179.69859 * 18 17 16 22 22 C 1.38245 * 119.99679 * 0.57457 * 21 18 17 23 23 C 1.50696 * 119.92339 * 179.74184 * 22 21 18 24 24 O 1.42897 * 109.47376 * 254.97928 * 23 22 21 25 25 Si 1.86303 * 109.47247 * 14.98292 * 23 22 21 26 26 C 1.38247 * 120.14896 * 359.72703 * 22 21 18 27 27 N 1.48000 * 119.92818 * 180.02562 * 26 22 21 28 28 O 1.21802 * 120.00375 * 179.97438 * 27 26 22 29 29 O 1.21807 * 120.00074 * 359.97100 * 27 26 22 30 30 C 1.38238 * 120.14642 * 359.97134 * 26 22 21 31 31 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 32 32 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 34 34 H 1.08997 * 112.83549 * 50.33146 * 5 3 2 35 35 H 1.09003 * 113.63917 * 334.95953 * 6 5 3 36 36 H 1.08998 * 113.65031 * 105.96079 * 6 5 3 37 37 H 1.09007 * 113.64846 * 220.48724 * 8 7 6 38 38 H 1.09007 * 113.64655 * 89.49003 * 8 7 6 39 39 H 1.08997 * 110.76125 * 9.88666 * 9 7 6 40 40 H 1.09000 * 110.76188 * 133.07964 * 9 7 6 41 41 H 1.08999 * 110.98801 * 83.11076 * 10 9 7 42 42 H 1.08999 * 110.99036 * 206.88389 * 10 9 7 43 43 H 1.08998 * 110.36439 * 155.52736 * 11 10 9 44 44 H 1.09003 * 110.35896 * 277.72542 * 11 10 9 45 45 H 1.09005 * 109.46863 * 300.00025 * 15 13 12 46 46 H 1.08997 * 109.46999 * 59.99464 * 15 13 12 47 47 H 1.08997 * 109.47590 * 59.99311 * 20 19 18 48 48 H 1.08999 * 109.47008 * 179.97438 * 20 19 18 49 49 H 1.09006 * 109.46571 * 299.99341 * 20 19 18 50 50 H 1.07998 * 120.00107 * 180.29342 * 21 18 17 51 51 H 1.09004 * 109.47222 * 134.98168 * 23 22 21 52 52 H 0.96704 * 114.00587 * 180.02562 * 24 23 22 53 53 H 1.48493 * 109.99763 * 299.99713 * 25 23 22 54 54 H 1.48498 * 110.00037 * 61.31885 * 25 23 22 55 55 H 1.07998 * 120.00500 * 180.02562 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0824 1.3931 7 6 5.1685 2.2030 1.0154 8 6 4.1077 2.7150 0.0369 9 6 6.4736 1.7242 0.3590 10 6 7.5278 1.9722 1.4721 11 6 6.9873 3.2655 2.1330 12 7 5.5184 3.1227 2.0991 13 6 4.6476 3.7350 2.9256 14 8 3.4567 3.5407 2.8036 15 6 5.1536 4.6602 4.0022 16 8 4.0471 5.1814 4.7412 17 6 4.3324 6.0398 5.7567 18 6 3.3031 6.5901 6.5145 19 8 2.0098 6.2702 6.2415 20 6 1.0057 6.8733 7.0601 21 6 3.5993 7.4594 7.5521 22 6 4.9143 7.7874 7.8250 23 6 5.2341 8.7375 8.9501 24 8 5.5965 10.0101 8.4106 25 14 3.7387 8.9300 10.0444 26 6 5.9364 7.2456 7.0681 27 7 7.3425 7.5997 7.3649 28 8 8.2442 7.1228 6.6992 29 8 7.5980 8.3682 8.2747 30 6 5.6483 6.3729 6.0355 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 4.0226 0.6566 -0.7724 35 1 3.5237 1.3432 2.2132 36 1 4.6708 0.1120 1.5271 37 1 4.5176 3.0521 -0.9153 38 1 3.4149 3.4315 0.4785 39 1 6.4154 0.6644 0.1113 40 1 6.6989 2.3150 -0.5289 41 1 7.5447 1.1474 2.1845 42 1 8.5167 2.1358 1.0439 43 1 7.3375 3.3403 3.1625 44 1 7.2981 4.1411 1.5629 45 1 5.8121 4.1098 4.6743 46 1 5.7053 5.4818 3.5453 47 1 1.0649 7.9578 6.9681 48 1 0.0215 6.5348 6.7364 49 1 1.1649 6.5876 8.0999 50 1 2.8026 7.8841 8.1448 51 1 6.0640 8.3414 9.5354 52 1 5.8164 10.6729 9.0796 53 1 2.6002 9.4695 9.2583 54 1 3.3708 7.6191 10.6371 55 1 6.4486 5.9507 5.4460 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:36:25 Heat of formation + Delta-G solvation = -136.191699 kcal Electronic energy + Delta-G solvation = -44981.798348 eV Core-core repulsion = 39150.427479 eV Total energy + Delta-G solvation = -5831.370869 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.175 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.48932 -42.60084 -42.20180 -41.31131 -40.30516 -39.35645 -38.92612 -37.82134 -37.74063 -37.15351 -36.74856 -33.07262 -32.88145 -32.57956 -30.18378 -29.55110 -28.98326 -28.07937 -27.99145 -27.05464 -25.96457 -25.36829 -24.20460 -23.49041 -23.16867 -22.26522 -21.08402 -20.85452 -19.94866 -19.68422 -19.43536 -18.92008 -18.86852 -18.41913 -18.26020 -18.18221 -17.97554 -17.87607 -17.58889 -17.49363 -17.15066 -16.69337 -16.60063 -16.35938 -15.92813 -15.74401 -15.52315 -15.40723 -14.99379 -14.79037 -14.54251 -14.42945 -14.28822 -14.23974 -14.09868 -14.04226 -13.81559 -13.58245 -13.45154 -13.38429 -13.05190 -12.99983 -12.74944 -12.71706 -12.58185 -12.46679 -12.43240 -12.38539 -12.23769 -12.15247 -12.00977 -11.94544 -11.94223 -11.93808 -11.50616 -11.41482 -10.95733 -10.67471 -10.25876 -9.83131 -9.66712 -5.02987 -1.42864 -0.61739 0.08150 0.19727 0.98491 1.05530 1.12896 1.26468 1.55173 1.63791 1.66073 1.73355 1.78721 2.11103 2.78068 2.95562 3.10068 3.15270 3.21376 3.27381 3.28921 3.48122 3.48860 3.68141 3.69548 3.70224 3.75254 3.79239 3.85598 3.87768 3.94739 4.02103 4.06403 4.07415 4.16911 4.18302 4.18398 4.18821 4.37191 4.45103 4.50310 4.53920 4.56206 4.57800 4.61600 4.68252 4.75240 4.81414 4.90207 4.92740 5.06482 5.16957 5.20724 5.24969 5.32768 5.36487 5.47059 5.85036 6.26073 6.48721 6.59180 6.82903 6.87968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.542 6.542 5 C -0.099 4.099 6 C -0.123 4.123 7 C 0.149 3.851 8 C -0.129 4.129 9 C -0.105 4.105 10 C -0.125 4.125 11 C 0.080 3.920 12 N -0.599 5.599 13 C 0.525 3.475 14 O -0.557 6.557 15 C 0.033 3.967 16 O -0.292 6.292 17 C 0.101 3.899 18 C 0.162 3.838 19 O -0.307 6.307 20 C 0.004 3.996 21 C -0.186 4.186 22 C -0.004 4.004 23 C -0.100 4.100 24 O -0.553 6.553 25 Si 0.779 3.221 26 C -0.041 4.041 27 N 0.037 4.963 28 O -0.190 6.190 29 O -0.138 6.138 30 C -0.106 4.106 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.166 0.834 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.073 0.927 48 H 0.129 0.871 49 H 0.074 0.926 50 H 0.170 0.830 51 H 0.103 0.897 52 H 0.409 0.591 53 H -0.270 1.270 54 H -0.277 1.277 55 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 -2.349 1.951 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.431 6.431 5 C -0.118 4.118 6 C -0.161 4.161 7 C 0.063 3.937 8 C -0.168 4.168 9 C -0.142 4.142 10 C -0.163 4.163 11 C -0.041 4.041 12 N -0.333 5.333 13 C 0.313 3.687 14 O -0.434 6.434 15 C -0.045 4.045 16 O -0.205 6.205 17 C 0.054 3.946 18 C 0.113 3.887 19 O -0.219 6.219 20 C -0.089 4.089 21 C -0.205 4.205 22 C -0.005 4.005 23 C -0.208 4.208 24 O -0.363 6.363 25 Si 0.681 3.319 26 C -0.125 4.125 27 N 0.553 4.447 28 O -0.397 6.397 29 O -0.359 6.359 30 C -0.125 4.125 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.092 0.908 48 H 0.147 0.853 49 H 0.093 0.907 50 H 0.186 0.814 51 H 0.120 0.880 52 H 0.261 0.739 53 H -0.197 1.197 54 H -0.203 1.203 55 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.813 -3.061 1.135 3.735 hybrid contribution -0.122 0.229 -0.161 0.306 sum 1.691 -2.832 0.974 3.439 Atomic orbital electron populations 1.23510 0.75283 1.05708 1.02078 1.86501 1.24608 1.32970 1.83683 1.24224 0.93025 0.80959 0.70901 1.90676 1.68076 1.37817 1.46576 1.22561 0.85476 1.01229 1.02560 1.23253 0.97775 1.00848 0.94244 1.22119 0.95674 0.89091 0.86781 1.23296 0.97738 0.94801 1.00955 1.22543 0.89272 1.03947 0.98465 1.22839 0.99613 0.96306 0.97516 1.22913 0.76710 1.00722 1.03767 1.48286 1.08540 1.44832 1.31596 1.19959 0.85652 0.80883 0.82226 1.90808 1.17454 1.63445 1.71709 1.22899 0.88605 0.98970 0.94001 1.86303 1.34086 1.57654 1.42422 1.17912 0.90372 0.94912 0.91393 1.18681 0.84793 0.92818 0.92398 1.86319 1.12089 1.66337 1.57145 1.23670 0.90579 0.99286 0.95403 1.21048 0.96669 1.02606 1.00180 1.19327 0.90756 0.95343 0.95113 1.25222 1.12382 0.86017 0.97163 1.86386 1.91260 1.20089 1.38604 0.93556 0.73195 0.83523 0.81669 1.20513 0.81046 1.07297 1.03679 1.43407 1.03018 0.98825 0.99456 1.94521 1.39552 1.56304 1.49327 1.94479 1.89339 1.29781 1.22252 1.20940 0.96250 0.97862 0.97484 0.91952 0.84753 0.93020 0.81663 0.91883 0.86940 0.88098 0.91634 0.87274 0.88228 0.89912 0.87025 0.88388 0.89084 0.85430 0.85841 0.90849 0.85275 0.90722 0.81363 0.87972 0.73911 1.19651 1.20315 0.79334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.36 -2.86 10.57 -51.46 -0.54 -3.40 16 3 C 0.46 5.02 7.48 71.24 0.53 5.55 16 4 O -0.54 -10.46 15.65 21.98 0.34 -10.11 16 5 C -0.10 -0.22 4.06 -10.94 -0.04 -0.26 16 6 C -0.12 -0.22 6.68 31.00 0.21 -0.01 16 7 C 0.15 -0.23 1.34 4.02 0.01 -0.23 16 8 C -0.13 -0.51 6.54 30.94 0.20 -0.30 16 9 C -0.10 1.06 6.08 31.63 0.19 1.25 16 10 C -0.13 1.51 7.09 32.06 0.23 1.73 16 11 C 0.08 -0.75 6.71 86.84 0.58 -0.16 16 12 N -0.60 0.40 3.17 -766.33 -2.43 -2.03 16 13 C 0.52 3.39 7.59 87.66 0.67 4.06 16 14 O -0.56 -9.84 13.69 16.00 0.22 -9.63 16 15 C 0.03 0.02 4.24 71.24 0.30 0.32 16 16 O -0.29 -2.58 9.45 -67.11 -0.63 -3.21 16 17 C 0.10 0.64 6.70 22.57 0.15 0.79 16 18 C 0.16 1.10 6.70 22.57 0.15 1.25 16 19 O -0.31 -2.41 10.28 -79.62 -0.82 -3.23 16 20 C 0.00 0.00 9.81 113.37 1.11 1.11 16 21 C -0.19 -0.75 7.65 22.35 0.17 -0.57 16 22 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 23 C -0.10 -0.05 1.73 71.23 0.12 0.08 16 24 O -0.55 -0.52 11.77 -129.62 -1.53 -2.04 16 25 Si 0.78 -3.56 30.19 68.60 2.07 -1.49 16 26 C -0.04 -0.27 6.84 36.38 0.25 -0.02 16 27 N 0.04 0.34 4.45 -46.47 -0.21 0.13 16 28 O -0.19 -1.90 18.44 18.88 0.35 -1.55 16 29 O -0.14 -1.31 14.62 25.09 0.37 -0.95 16 30 C -0.11 -0.35 8.54 22.35 0.19 -0.16 16 31 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 32 H 0.13 -0.40 8.14 -2.38 -0.02 -0.42 16 33 H 0.05 0.33 8.13 -2.39 -0.02 0.31 16 34 H 0.17 -0.96 8.14 -2.39 -0.02 -0.98 16 35 H 0.06 0.67 6.50 -2.39 -0.02 0.65 16 36 H 0.11 -0.44 8.01 -2.39 -0.02 -0.46 16 37 H 0.10 -0.06 8.01 -2.38 -0.02 -0.08 16 38 H 0.06 0.94 6.03 -2.38 -0.01 0.92 16 39 H 0.11 -1.42 7.85 -2.39 -0.02 -1.43 16 40 H 0.10 -1.17 8.01 -2.39 -0.02 -1.19 16 41 H 0.08 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.11 -1.70 8.14 -2.39 -0.02 -1.71 16 43 H 0.10 -1.24 7.50 -2.39 -0.02 -1.25 16 44 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H 0.13 -0.77 7.38 -2.38 -0.02 -0.79 16 46 H 0.12 -0.62 7.66 -2.39 -0.02 -0.64 16 47 H 0.07 -0.22 7.68 -2.39 -0.02 -0.24 16 48 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 49 H 0.07 -0.29 7.65 -2.38 -0.02 -0.31 16 50 H 0.17 0.09 3.13 -2.91 -0.01 0.08 16 51 H 0.10 -0.02 6.07 -2.38 -0.01 -0.03 16 52 H 0.41 -3.78 8.74 -74.05 -0.65 -4.43 16 53 H -0.27 0.25 6.74 99.48 0.67 0.92 16 54 H -0.28 0.03 7.11 99.48 0.71 0.74 16 55 H 0.19 -0.46 5.85 -2.91 -0.02 -0.48 16 Total: 0.00 -38.72 448.97 3.64 -35.08 By element: Atomic # 1 Polarization: -13.52 SS G_CDS: 0.34 Total: -13.18 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.11 Total: 15.60 kcal Atomic # 7 Polarization: 0.74 SS G_CDS: -2.63 Total: -1.89 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -2.24 Total: -34.12 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.07 Total: -1.49 kcal Total: -38.72 3.64 -35.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.111 kcal (2) G-P(sol) polarization free energy of solvation -38.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds