Wall clock time and date at job start Sun Mar 7 2021 03:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34221 * 117.00694 * 2 1 4 4 O 1.20826 * 119.99859 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00621 * 179.97438 * 3 2 1 6 6 C 1.53893 * 113.60056 * 180.02562 * 5 3 2 7 7 C 1.53152 * 86.89555 * 139.53232 * 6 5 3 8 8 C 1.53137 * 87.73075 * 334.92558 * 7 6 5 9 9 C 1.53742 * 114.76938 * 218.56754 * 7 6 5 10 10 C 1.55582 * 102.76243 * 251.56443 * 9 7 6 11 11 C 1.54962 * 101.54130 * 325.04711 * 10 9 7 12 12 N 1.46381 * 115.35782 * 92.04865 * 7 6 5 13 13 C 1.34769 * 125.80222 * 311.15972 * 12 7 6 14 14 O 1.21643 * 120.00149 * 355.65037 * 13 12 7 15 15 C 1.47191 * 120.00219 * 175.64701 * 13 12 7 16 16 C 1.36011 * 123.45940 * 15.51410 * 15 13 12 17 17 S 1.70446 * 110.81639 * 179.89313 * 16 15 13 18 18 C 1.75503 * 92.44558 * 0.31979 * 17 16 15 19 19 C 1.50701 * 124.71298 * 179.85092 * 18 17 16 20 20 O 1.42896 * 109.47517 * 244.95888 * 19 18 17 21 21 Si 1.86301 * 109.47006 * 4.96248 * 19 18 17 22 22 C 1.32766 * 110.57661 * 359.82015 * 18 17 16 23 23 H 1.09002 * 109.47095 * 300.00211 * 1 2 3 24 24 H 1.09003 * 109.46745 * 59.99653 * 1 2 3 25 25 H 1.09002 * 109.47631 * 179.97438 * 1 2 3 26 26 H 1.09004 * 112.83498 * 48.85725 * 5 3 2 27 27 H 1.08999 * 113.64774 * 25.03006 * 6 5 3 28 28 H 1.09004 * 113.72600 * 254.04870 * 6 5 3 29 29 H 1.09003 * 113.64354 * 139.58061 * 8 7 6 30 30 H 1.08999 * 113.63993 * 270.57277 * 8 7 6 31 31 H 1.08996 * 110.75754 * 9.88664 * 9 7 6 32 32 H 1.09004 * 110.75423 * 133.07110 * 9 7 6 33 33 H 1.09008 * 111.09730 * 206.96867 * 10 9 7 34 34 H 1.09000 * 110.99475 * 83.07883 * 10 9 7 35 35 H 1.08996 * 110.35666 * 277.76538 * 11 10 9 36 36 H 1.09002 * 110.35705 * 155.57545 * 11 10 9 37 37 H 1.07995 * 124.58982 * 0.02562 * 16 15 13 38 38 H 1.08997 * 109.46871 * 124.95792 * 19 18 17 39 39 H 0.96700 * 114.00170 * 179.97438 * 20 19 18 40 40 H 1.48500 * 109.99929 * 299.99957 * 21 19 18 41 41 H 1.48506 * 109.99965 * 61.31425 * 21 19 18 42 42 H 1.08000 * 123.45919 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1078 2.7152 0.0011 7 6 5.1673 2.2280 0.9939 8 6 4.1908 1.1199 1.3986 9 6 5.5095 3.2260 2.1122 10 6 6.9363 3.7062 1.7196 11 6 7.5415 2.4156 1.1117 12 7 6.4229 1.7704 0.3966 13 6 6.5381 0.9072 -0.6320 14 8 5.5462 0.3761 -1.0944 15 6 7.8641 0.6070 -1.1959 16 6 9.0320 0.9045 -0.5655 17 16 10.3684 0.4146 -1.5031 18 6 9.3392 -0.2001 -2.7849 19 6 9.8392 -0.8356 -4.0566 20 8 9.4780 -0.0183 -5.1717 21 14 11.6935 -0.9994 -3.9816 22 6 8.0590 -0.0280 -2.4784 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.0237 0.6366 -0.7556 27 1 3.4147 3.4427 0.4235 28 1 4.5192 3.0295 -0.9581 29 1 4.6686 0.1535 1.5595 30 1 3.5208 1.4028 2.2105 31 1 4.8079 4.0601 2.1135 32 1 5.5195 2.7300 3.0828 33 1 7.4984 4.0252 2.5974 34 1 6.8897 4.5028 0.9771 35 1 7.9137 1.7630 1.9014 36 1 8.3434 2.6638 0.4165 37 1 9.1029 1.3841 0.3996 38 1 9.3916 -1.8230 -4.1697 39 1 9.7687 -0.3670 -6.0255 40 1 12.3159 0.3400 -3.8274 41 1 12.0806 -1.8732 -2.8449 42 1 7.2466 -0.3314 -3.1221 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15736542_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:37:27 Heat of formation + Delta-G solvation = -45.655619 kcal Electronic energy + Delta-G solvation = -27762.683264 eV Core-core repulsion = 23803.846639 eV Total energy + Delta-G solvation = -3958.836626 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.60768 -41.00644 -39.57399 -38.43348 -37.63356 -37.20290 -36.38902 -33.15892 -31.68212 -29.71616 -28.29475 -27.00886 -26.84547 -26.29118 -24.85910 -23.39290 -22.21779 -21.30149 -20.78223 -19.13083 -18.89389 -18.58079 -18.16683 -17.86155 -17.30306 -17.19477 -16.97848 -16.46857 -16.36250 -15.80594 -15.49622 -15.24542 -15.04008 -14.55032 -14.43918 -14.34679 -14.10678 -13.98376 -13.79995 -13.72708 -13.44851 -13.37567 -13.17417 -12.92747 -12.75926 -12.52643 -12.35663 -12.09443 -12.04929 -12.00147 -11.58337 -11.54200 -11.46594 -11.02368 -10.51494 -10.29156 -10.01542 -9.87943 -9.53028 -5.32999 -0.41139 0.32758 0.67407 0.84433 1.10174 1.46088 1.49044 1.68205 1.80346 2.01218 2.17588 3.12793 3.24820 3.30007 3.45666 3.57146 3.58658 3.66081 3.74281 3.83398 3.92835 4.01831 4.18270 4.22809 4.28201 4.30395 4.32381 4.37166 4.39484 4.51812 4.64479 4.65607 4.73646 4.74381 4.80002 4.83269 4.91189 4.96601 5.04084 5.05652 5.15363 5.40568 5.48858 5.66352 6.31250 6.48723 7.01685 7.23980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.516 6.516 5 C -0.146 4.146 6 C -0.118 4.118 7 C 0.142 3.858 8 C -0.119 4.119 9 C -0.116 4.116 10 C -0.134 4.134 11 C 0.082 3.918 12 N -0.590 5.590 13 C 0.600 3.400 14 O -0.519 6.519 15 C -0.151 4.151 16 C -0.218 4.218 17 S 0.172 5.828 18 C -0.196 4.196 19 C -0.035 4.035 20 O -0.543 6.543 21 Si 0.670 3.330 22 C -0.048 4.048 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.101 0.899 26 H 0.192 0.808 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.189 0.811 38 H 0.085 0.915 39 H 0.385 0.615 40 H -0.234 1.234 41 H -0.238 1.238 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -1.297 0.588 6.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.404 6.404 5 C -0.164 4.164 6 C -0.156 4.156 7 C 0.057 3.943 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.172 4.172 11 C -0.040 4.040 12 N -0.322 5.322 13 C 0.390 3.610 14 O -0.398 6.398 15 C -0.169 4.169 16 C -0.355 4.355 17 S 0.438 5.562 18 C -0.312 4.312 19 C -0.148 4.148 20 O -0.350 6.350 21 Si 0.569 3.431 22 C -0.077 4.077 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.207 0.793 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.206 0.794 38 H 0.103 0.897 39 H 0.233 0.767 40 H -0.157 1.157 41 H -0.162 1.162 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.721 -0.772 1.447 7.893 hybrid contribution -2.381 0.057 0.107 2.384 sum 5.339 -0.715 1.554 5.607 Atomic orbital electron populations 1.23272 0.76638 1.03710 1.02457 1.86548 1.23175 1.33699 1.83863 1.23998 0.92153 0.81080 0.71427 1.90635 1.67363 1.36514 1.45928 1.24079 0.86616 1.02044 1.03625 1.23238 0.96566 0.95636 1.00208 1.21454 0.84102 0.94930 0.93856 1.23112 0.97310 0.99760 0.95596 1.22572 0.97340 0.98192 0.97251 1.22903 0.96047 0.96523 1.01692 1.22948 0.90155 0.94563 0.96334 1.47958 1.07260 1.44340 1.32646 1.17322 0.87892 0.77736 0.78013 1.90216 1.36770 1.51601 1.61217 1.20067 0.92457 1.07297 0.97092 1.26681 0.97246 1.05170 1.06444 1.83232 1.08795 1.54647 1.09506 1.23416 0.96478 1.10553 1.00737 1.23998 1.11182 0.95116 0.84488 1.86517 1.82107 1.50051 1.16278 0.94693 0.75730 0.83873 0.88834 1.21010 0.96323 0.96478 0.93931 0.92011 0.91937 0.88088 0.79284 0.87713 0.90346 0.89850 0.88749 0.89185 0.89750 0.89176 0.90010 0.90330 0.89022 0.79385 0.89697 0.76665 1.15701 1.16217 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 10.56 101.05 1.07 1.13 16 2 O -0.36 -1.73 10.56 -39.23 -0.41 -2.15 16 3 C 0.47 2.57 7.48 36.00 0.27 2.84 16 4 O -0.52 -3.89 15.64 -18.75 -0.29 -4.19 16 5 C -0.15 -0.55 3.61 -90.84 -0.33 -0.87 16 6 C -0.12 -0.28 6.50 -26.19 -0.17 -0.45 16 7 C 0.14 0.07 1.44 -131.35 -0.19 -0.12 16 8 C -0.12 -0.18 6.73 -26.19 -0.18 -0.36 16 9 C -0.12 0.23 6.31 -24.97 -0.16 0.08 16 10 C -0.13 0.42 7.11 -24.32 -0.17 0.25 16 11 C 0.08 -0.20 5.16 -2.39 -0.01 -0.21 16 12 N -0.59 -0.36 3.17 -157.57 -0.50 -0.86 16 13 C 0.60 1.74 7.52 -12.63 -0.09 1.65 16 14 O -0.52 -2.73 12.41 5.24 0.06 -2.66 16 15 C -0.15 -0.31 5.93 -104.63 -0.62 -0.93 16 16 C -0.22 0.01 9.10 29.93 0.27 0.28 16 17 S 0.17 0.10 20.20 -107.50 -2.17 -2.07 16 18 C -0.20 -0.31 5.69 -36.18 -0.21 -0.52 16 19 C -0.03 0.02 2.93 36.01 0.11 0.13 16 20 O -0.54 0.16 12.86 -35.23 -0.45 -0.30 16 21 Si 0.67 -1.28 30.92 -169.99 -5.26 -6.54 16 22 C -0.05 -0.12 9.99 -39.02 -0.39 -0.51 16 23 H 0.06 0.11 8.13 -51.93 -0.42 -0.32 16 24 H 0.06 0.13 8.13 -51.93 -0.42 -0.29 16 25 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 26 H 0.19 1.01 4.06 -56.97 -0.23 0.78 16 27 H 0.10 0.26 7.21 -51.93 -0.37 -0.11 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.06 8.08 -51.93 -0.42 -0.35 16 31 H 0.09 -0.20 7.79 -51.93 -0.40 -0.60 16 32 H 0.08 -0.23 8.11 -51.93 -0.42 -0.65 16 33 H 0.09 -0.42 8.14 -51.92 -0.42 -0.84 16 34 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 35 H 0.08 -0.29 7.84 -51.93 -0.41 -0.70 16 36 H 0.09 -0.28 5.42 -51.93 -0.28 -0.57 16 37 H 0.19 -0.52 4.39 -52.49 -0.23 -0.75 16 38 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 39 H 0.39 -2.09 8.74 45.56 0.40 -1.69 16 40 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 41 H -0.24 -0.04 7.11 56.52 0.40 0.36 16 42 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 350.67 15.07 5.28 5.28 Total: 0.00 -8.88 350.67 -9.90 -18.79 By element: Atomic # 1 Polarization: -2.32 SS G_CDS: -5.36 Total: -7.68 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.80 Total: 2.38 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -0.50 Total: -0.86 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -1.10 Total: -9.30 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.26 Total: -6.54 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.17 Total: -2.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -8.88 -9.90 -18.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.870 kcal (2) G-P(sol) polarization free energy of solvation -8.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds