Wall clock time and date at job start Sun Mar 7 2021 03:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34221 * 117.00694 * 2 1 4 4 O 1.20826 * 119.99859 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00621 * 179.97438 * 3 2 1 6 6 C 1.53893 * 113.60056 * 180.02562 * 5 3 2 7 7 C 1.53152 * 86.89555 * 139.53232 * 6 5 3 8 8 C 1.53137 * 87.73075 * 334.92558 * 7 6 5 9 9 C 1.53742 * 114.76938 * 218.56754 * 7 6 5 10 10 C 1.55582 * 102.76243 * 251.56443 * 9 7 6 11 11 C 1.54962 * 101.54130 * 325.04711 * 10 9 7 12 12 N 1.46381 * 115.35782 * 92.04865 * 7 6 5 13 13 C 1.34769 * 125.80222 * 311.15972 * 12 7 6 14 14 O 1.21643 * 120.00149 * 355.65037 * 13 12 7 15 15 C 1.47191 * 120.00219 * 175.64701 * 13 12 7 16 16 C 1.36011 * 123.45940 * 15.51410 * 15 13 12 17 17 S 1.70446 * 110.81639 * 179.89313 * 16 15 13 18 18 C 1.75503 * 92.44558 * 0.31979 * 17 16 15 19 19 C 1.50701 * 124.71298 * 179.85092 * 18 17 16 20 20 O 1.42896 * 109.47517 * 244.95888 * 19 18 17 21 21 Si 1.86301 * 109.47006 * 4.96248 * 19 18 17 22 22 C 1.32766 * 110.57661 * 359.82015 * 18 17 16 23 23 H 1.09002 * 109.47095 * 300.00211 * 1 2 3 24 24 H 1.09003 * 109.46745 * 59.99653 * 1 2 3 25 25 H 1.09002 * 109.47631 * 179.97438 * 1 2 3 26 26 H 1.09004 * 112.83498 * 48.85725 * 5 3 2 27 27 H 1.08999 * 113.64774 * 25.03006 * 6 5 3 28 28 H 1.09004 * 113.72600 * 254.04870 * 6 5 3 29 29 H 1.09003 * 113.64354 * 139.58061 * 8 7 6 30 30 H 1.08999 * 113.63993 * 270.57277 * 8 7 6 31 31 H 1.08996 * 110.75754 * 9.88664 * 9 7 6 32 32 H 1.09004 * 110.75423 * 133.07110 * 9 7 6 33 33 H 1.09008 * 111.09730 * 206.96867 * 10 9 7 34 34 H 1.09000 * 110.99475 * 83.07883 * 10 9 7 35 35 H 1.08996 * 110.35666 * 277.76538 * 11 10 9 36 36 H 1.09002 * 110.35705 * 155.57545 * 11 10 9 37 37 H 1.07995 * 124.58982 * 0.02562 * 16 15 13 38 38 H 1.08997 * 109.46871 * 124.95792 * 19 18 17 39 39 H 0.96700 * 114.00170 * 179.97438 * 20 19 18 40 40 H 1.48500 * 109.99929 * 299.99957 * 21 19 18 41 41 H 1.48506 * 109.99965 * 61.31425 * 21 19 18 42 42 H 1.08000 * 123.45919 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.1078 2.7152 0.0011 7 6 5.1673 2.2280 0.9939 8 6 4.1908 1.1199 1.3986 9 6 5.5095 3.2260 2.1122 10 6 6.9363 3.7062 1.7196 11 6 7.5415 2.4156 1.1117 12 7 6.4229 1.7704 0.3966 13 6 6.5381 0.9072 -0.6320 14 8 5.5462 0.3761 -1.0944 15 6 7.8641 0.6070 -1.1959 16 6 9.0320 0.9045 -0.5655 17 16 10.3684 0.4146 -1.5031 18 6 9.3392 -0.2001 -2.7849 19 6 9.8392 -0.8356 -4.0566 20 8 9.4780 -0.0183 -5.1717 21 14 11.6935 -0.9994 -3.9816 22 6 8.0590 -0.0280 -2.4784 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.0237 0.6366 -0.7556 27 1 3.4147 3.4427 0.4235 28 1 4.5192 3.0295 -0.9581 29 1 4.6686 0.1535 1.5595 30 1 3.5208 1.4028 2.2105 31 1 4.8079 4.0601 2.1135 32 1 5.5195 2.7300 3.0828 33 1 7.4984 4.0252 2.5974 34 1 6.8897 4.5028 0.9771 35 1 7.9137 1.7630 1.9014 36 1 8.3434 2.6638 0.4165 37 1 9.1029 1.3841 0.3996 38 1 9.3916 -1.8230 -4.1697 39 1 9.7687 -0.3670 -6.0255 40 1 12.3159 0.3400 -3.8274 41 1 12.0806 -1.8732 -2.8449 42 1 7.2466 -0.3314 -3.1221 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:37:26 Heat of formation + Delta-G solvation = -44.204994 kcal Electronic energy + Delta-G solvation = -27762.620361 eV Core-core repulsion = 23803.846639 eV Total energy + Delta-G solvation = -3958.773722 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.74463 -41.33904 -39.67958 -38.49307 -37.79725 -37.38937 -36.52471 -33.13910 -31.68694 -29.84308 -28.37580 -27.09635 -26.95428 -26.34620 -24.98629 -23.36655 -22.18141 -21.54733 -20.87712 -19.29185 -19.11022 -18.52585 -18.29900 -18.03880 -17.50453 -17.35137 -17.14122 -16.56262 -16.40940 -15.89719 -15.55477 -15.24089 -15.05881 -14.69605 -14.52069 -14.34484 -14.10952 -14.03693 -13.93403 -13.75704 -13.56425 -13.47045 -13.26268 -12.96035 -12.81030 -12.63066 -12.39517 -12.16363 -12.04788 -11.95269 -11.91007 -11.64863 -11.49165 -11.22482 -10.55124 -10.43786 -10.04854 -9.96286 -9.58656 -5.19032 -0.46350 0.27950 0.61207 0.72366 1.04132 1.19216 1.59986 1.65080 1.73744 1.89113 2.04897 3.11767 3.26255 3.35569 3.43603 3.52484 3.54583 3.65768 3.73989 3.89134 3.94832 4.06847 4.12519 4.19644 4.21099 4.24207 4.34297 4.41388 4.44980 4.52476 4.58045 4.60154 4.64042 4.68279 4.84310 4.86365 4.90197 4.94357 5.04513 5.05754 5.20009 5.24375 5.29582 5.40569 6.25877 6.62533 6.83454 7.07364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.543 6.543 5 C -0.156 4.156 6 C -0.117 4.117 7 C 0.147 3.853 8 C -0.112 4.112 9 C -0.113 4.113 10 C -0.126 4.126 11 C 0.073 3.927 12 N -0.588 5.588 13 C 0.592 3.408 14 O -0.553 6.553 15 C -0.172 4.172 16 C -0.200 4.200 17 S 0.179 5.821 18 C -0.209 4.209 19 C -0.049 4.049 20 O -0.564 6.564 21 Si 0.757 3.243 22 C -0.068 4.068 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.129 0.871 26 H 0.177 0.823 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.217 0.783 38 H 0.100 0.900 39 H 0.406 0.594 40 H -0.269 1.269 41 H -0.264 1.264 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -1.062 1.857 8.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.433 6.433 5 C -0.173 4.173 6 C -0.155 4.155 7 C 0.062 3.938 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.164 4.164 11 C -0.048 4.048 12 N -0.319 5.319 13 C 0.383 3.617 14 O -0.436 6.436 15 C -0.190 4.190 16 C -0.337 4.337 17 S 0.445 5.555 18 C -0.325 4.325 19 C -0.161 4.161 20 O -0.374 6.374 21 Si 0.658 3.342 22 C -0.097 4.097 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.192 0.808 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.234 0.766 38 H 0.117 0.883 39 H 0.257 0.743 40 H -0.195 1.195 41 H -0.190 1.190 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.197 -0.544 2.705 9.602 hybrid contribution -2.863 -0.028 -0.326 2.882 sum 6.334 -0.572 2.379 6.790 Atomic orbital electron populations 1.23532 0.75176 1.05581 1.02436 1.86544 1.24780 1.33448 1.83541 1.24372 0.92782 0.80866 0.70562 1.90607 1.68042 1.37251 1.47406 1.24151 0.85494 1.02821 1.04840 1.23199 0.97339 0.94784 1.00194 1.21473 0.83724 0.94814 0.93838 1.23095 0.97483 1.00020 0.94407 1.22610 0.98234 0.97567 0.96625 1.22918 0.95282 0.95786 1.02426 1.23251 0.89445 0.95259 0.96828 1.48055 1.08346 1.43514 1.31985 1.17546 0.87833 0.77922 0.78378 1.90207 1.37767 1.53152 1.62437 1.20052 0.92771 1.08709 0.97428 1.26975 0.96128 1.03645 1.06978 1.83222 1.08705 1.54328 1.09211 1.23786 0.96447 1.10351 1.01935 1.24302 1.12640 0.95425 0.83726 1.86464 1.82626 1.50781 1.17550 0.93626 0.72855 0.80576 0.87103 1.21039 0.96542 0.97634 0.94525 0.91727 0.92290 0.85325 0.80775 0.87856 0.91808 0.90362 0.87716 0.88848 0.88259 0.86722 0.90493 0.88157 0.88238 0.76635 0.88258 0.74270 1.19514 1.18959 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.37 -4.13 10.56 -51.33 -0.54 -4.67 16 3 C 0.47 6.06 7.48 71.23 0.53 6.59 16 4 O -0.54 -9.23 15.64 21.96 0.34 -8.89 16 5 C -0.16 -1.48 3.61 -10.94 -0.04 -1.52 16 6 C -0.12 -0.75 6.50 30.95 0.20 -0.55 16 7 C 0.15 0.18 1.44 3.97 0.01 0.19 16 8 C -0.11 -0.43 6.73 30.94 0.21 -0.22 16 9 C -0.11 0.61 6.31 31.73 0.20 0.81 16 10 C -0.13 1.06 7.11 32.16 0.23 1.29 16 11 C 0.07 -0.48 5.16 86.84 0.45 -0.03 16 12 N -0.59 -0.79 3.17 -770.69 -2.44 -3.23 16 13 C 0.59 4.31 7.52 86.60 0.65 4.96 16 14 O -0.55 -7.37 12.41 -4.17 -0.05 -7.43 16 15 C -0.17 -0.88 5.93 -19.87 -0.12 -1.00 16 16 C -0.20 0.11 9.10 67.30 0.61 0.72 16 17 S 0.18 0.18 20.20 -56.49 -1.14 -0.96 16 18 C -0.21 -0.85 5.69 24.51 0.14 -0.71 16 19 C -0.05 0.05 2.93 71.24 0.21 0.26 16 20 O -0.56 0.08 12.86 -148.98 -1.92 -1.84 16 21 Si 0.76 -3.05 30.92 68.60 2.12 -0.93 16 22 C -0.07 -0.47 9.99 22.67 0.23 -0.25 16 23 H 0.06 0.27 8.13 -2.39 -0.02 0.25 16 24 H 0.06 0.32 8.13 -2.39 -0.02 0.30 16 25 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 26 H 0.18 2.41 4.06 -82.19 -0.33 2.07 16 27 H 0.10 0.67 7.21 -2.39 -0.02 0.65 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.16 8.08 -2.39 -0.02 0.14 16 31 H 0.09 -0.52 7.79 -2.39 -0.02 -0.54 16 32 H 0.10 -0.78 8.11 -2.39 -0.02 -0.80 16 33 H 0.11 -1.46 8.14 -2.38 -0.02 -1.48 16 34 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.10 -1.04 7.84 -2.39 -0.02 -1.05 16 36 H 0.10 -0.80 5.42 -2.39 -0.01 -0.81 16 37 H 0.22 -1.59 4.39 -2.91 -0.01 -1.60 16 38 H 0.10 -0.43 7.96 -2.39 -0.02 -0.45 16 39 H 0.41 -4.44 8.74 -74.06 -0.65 -5.09 16 40 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 41 H -0.26 -0.04 7.11 99.48 0.71 0.67 16 42 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 Total: 0.00 -23.44 350.67 1.21 -22.23 By element: Atomic # 1 Polarization: -6.29 SS G_CDS: 0.14 Total: -6.15 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 4.70 Total: 11.86 kcal Atomic # 7 Polarization: -0.79 SS G_CDS: -2.44 Total: -3.23 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -2.17 Total: -22.82 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.12 Total: -0.93 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.14 Total: -0.96 kcal Total: -23.44 1.21 -22.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.973 kcal (2) G-P(sol) polarization free energy of solvation -23.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds