Wall clock time and date at job start Sun Mar 7 2021 03:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.53899 * 113.59333 * 278.91454 * 5 3 2 7 7 C 1.53325 * 86.83067 * 220.48509 * 6 5 3 8 8 C 1.53139 * 87.75596 * 25.01372 * 7 6 5 9 9 C 1.53736 * 114.69906 * 268.65665 * 7 6 5 10 10 C 1.55299 * 102.73524 * 251.57767 * 9 7 6 11 11 C 1.54965 * 101.66707 * 325.02105 * 10 9 7 12 12 N 1.46381 * 115.39880 * 142.16298 * 7 6 5 13 13 C 1.34770 * 125.80242 * 311.07903 * 12 7 6 14 14 O 1.21279 * 120.00152 * 0.02562 * 13 12 7 15 15 C 1.50699 * 120.00050 * 179.97438 * 13 12 7 16 16 N 1.46504 * 109.47368 * 180.02562 * 15 13 12 17 17 C 1.36835 * 125.06069 * 265.03130 * 16 15 13 18 18 C 1.34233 * 109.93678 * 179.97438 * 17 16 15 19 19 C 1.50701 * 126.50154 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47300 * 254.97109 * 19 18 17 21 21 Si 1.86303 * 109.47175 * 14.97148 * 19 18 17 22 22 C 1.46491 * 107.00172 * 359.97438 * 18 17 16 23 23 C 1.39593 * 134.04111 * 180.02562 * 22 18 17 24 24 C 1.36660 * 119.76301 * 179.97438 * 23 22 18 25 25 C 1.38791 * 120.53280 * 0.02562 * 24 23 22 26 26 C 1.37787 * 120.66301 * 359.97438 * 25 24 23 27 27 C 1.37694 * 125.06328 * 84.71985 * 16 15 13 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09002 * 112.83665 * 50.04840 * 5 3 2 32 32 H 1.08991 * 113.64527 * 334.96001 * 6 5 3 33 33 H 1.09006 * 113.64021 * 105.96409 * 6 5 3 34 34 H 1.08998 * 113.64081 * 220.47700 * 8 7 6 35 35 H 1.09005 * 113.64286 * 89.49109 * 8 7 6 36 36 H 1.09001 * 110.75870 * 9.89107 * 9 7 6 37 37 H 1.09001 * 110.75752 * 133.08348 * 9 7 6 38 38 H 1.09005 * 110.98767 * 83.11613 * 10 9 7 39 39 H 1.09002 * 110.99135 * 206.92131 * 10 9 7 40 40 H 1.08999 * 110.36199 * 155.52859 * 11 10 9 41 41 H 1.09001 * 110.35700 * 277.72562 * 11 10 9 42 42 H 1.08996 * 109.47513 * 300.00257 * 15 13 12 43 43 H 1.09001 * 109.46894 * 60.00268 * 15 13 12 44 44 H 1.08003 * 125.03503 * 359.95297 * 17 16 15 45 45 H 1.08999 * 109.47299 * 134.97065 * 19 18 17 46 46 H 0.96693 * 114.00332 * 180.02562 * 20 19 18 47 47 H 1.48498 * 109.99977 * 178.68046 * 21 19 18 48 48 H 1.48500 * 109.99714 * 300.00000 * 21 19 18 49 49 H 1.07995 * 120.11716 * 359.97438 * 23 22 18 50 50 H 1.08002 * 119.73940 * 180.02562 * 24 23 22 51 51 H 1.07996 * 119.66979 * 179.97438 * 25 24 23 52 52 H 1.08000 * 120.11498 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.1988 1.0860 1.3840 7 6 5.1729 2.2057 0.9992 8 6 4.1078 2.7152 0.0240 9 6 6.4752 1.7252 0.3383 10 6 7.5341 1.9761 1.4461 11 6 6.9965 3.2710 2.1061 12 7 5.5276 3.1281 2.0791 13 6 4.6604 3.7421 2.9081 14 8 3.4690 3.5472 2.7920 15 6 5.1711 4.6700 3.9800 16 7 4.0401 5.2059 4.7416 17 6 3.4237 6.4027 4.4963 18 6 2.4260 6.5921 5.3741 19 6 1.5055 7.7834 5.4415 20 8 1.8759 8.6096 6.5471 21 14 1.6400 8.7624 3.8622 22 6 2.4008 5.4206 6.2532 23 6 1.6091 5.0378 7.3374 24 6 1.8463 3.8464 7.9633 25 6 2.8686 3.0136 7.5302 26 6 3.6620 3.3718 6.4622 27 6 3.4352 4.5775 5.8070 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 4.0192 0.6546 -0.7796 32 1 3.5335 1.3488 2.2063 33 1 4.6774 0.1159 1.5182 34 1 4.5135 3.0499 -0.9307 35 1 3.4170 3.4328 0.4668 36 1 6.4158 0.6647 0.0936 37 1 6.6965 2.3138 -0.5521 38 1 7.5542 1.1531 2.1606 39 1 8.5211 2.1392 1.0132 40 1 7.3513 3.3484 3.1338 41 1 7.3048 4.1451 1.5324 42 1 5.8328 4.1216 4.6504 43 1 5.7203 5.4908 3.5186 44 1 3.6994 7.0929 3.7127 45 1 0.4785 7.4422 5.5711 46 1 1.3244 9.3969 6.6519 47 1 0.7136 9.9223 3.9031 48 1 3.0357 9.2335 3.6740 49 1 0.8121 5.6809 7.6802 50 1 1.2333 3.5504 8.8018 51 1 3.0440 2.0753 8.0354 52 1 4.4548 2.7168 6.1324 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:37:39 Heat of formation + Delta-G solvation = -35.362687 kcal Electronic energy + Delta-G solvation = -37167.797750 eV Core-core repulsion = 32487.301783 eV Total energy + Delta-G solvation = -4680.495967 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.177 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.70073 -42.28890 -41.15251 -39.33857 -38.11477 -37.73866 -37.64406 -36.66926 -34.22212 -32.74937 -31.39939 -30.32574 -29.81849 -28.95079 -28.01768 -26.99252 -25.99465 -25.18905 -23.91912 -23.43609 -22.69620 -22.01915 -20.95923 -20.53895 -19.50157 -18.81230 -18.50870 -18.16254 -17.96958 -17.86891 -17.70527 -17.45377 -16.87839 -16.51844 -16.39961 -15.95412 -15.80095 -15.51001 -15.24231 -14.97300 -14.87610 -14.77341 -14.50960 -14.46190 -14.23765 -14.16888 -14.05012 -13.79555 -13.57498 -13.55276 -13.39490 -13.16311 -12.94026 -12.77198 -12.58788 -12.51404 -12.31928 -12.13751 -12.09041 -11.95223 -11.89636 -11.88978 -11.76333 -11.45983 -11.35674 -10.96658 -10.55787 -10.39089 -9.70910 -9.19645 -8.67676 -4.91845 0.10044 0.60536 1.06432 1.27678 1.33802 1.41655 1.54038 1.56715 1.69274 1.87147 2.07222 2.90319 3.18875 3.30147 3.35506 3.47127 3.55644 3.57856 3.62756 3.71960 3.76957 3.79767 3.92954 3.96329 4.03090 4.12250 4.18973 4.20860 4.22316 4.22775 4.23436 4.36051 4.43190 4.53197 4.55292 4.61786 4.66256 4.67867 4.73544 4.74894 4.80452 4.85530 4.88724 4.95813 4.99564 5.09765 5.11130 5.20375 5.30372 5.36860 5.47358 5.51623 5.62085 5.69461 5.71445 6.13595 6.20654 6.42276 6.64410 6.64464 7.02550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.464 3.536 4 O -0.539 6.539 5 C -0.101 4.101 6 C -0.121 4.121 7 C 0.150 3.850 8 C -0.125 4.125 9 C -0.106 4.106 10 C -0.126 4.126 11 C 0.084 3.916 12 N -0.601 5.601 13 C 0.503 3.497 14 O -0.555 6.555 15 C 0.093 3.907 16 N -0.466 5.466 17 C 0.071 3.929 18 C -0.179 4.179 19 C -0.050 4.050 20 O -0.558 6.558 21 Si 0.751 3.249 22 C -0.118 4.118 23 C -0.087 4.087 24 C -0.152 4.152 25 C -0.105 4.105 26 C -0.134 4.134 27 C 0.092 3.908 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.189 0.811 45 H 0.073 0.927 46 H 0.390 0.610 47 H -0.279 1.279 48 H -0.276 1.276 49 H 0.121 0.879 50 H 0.140 0.860 51 H 0.148 0.852 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.820 -4.252 -4.211 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.308 3.692 4 O -0.428 6.428 5 C -0.120 4.120 6 C -0.160 4.160 7 C 0.064 3.936 8 C -0.164 4.164 9 C -0.144 4.144 10 C -0.164 4.164 11 C -0.037 4.037 12 N -0.334 5.334 13 C 0.291 3.709 14 O -0.432 6.432 15 C -0.031 4.031 16 N -0.149 5.149 17 C -0.055 4.055 18 C -0.186 4.186 19 C -0.158 4.158 20 O -0.368 6.368 21 Si 0.653 3.347 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.171 4.171 25 C -0.124 4.124 26 C -0.154 4.154 27 C -0.013 4.013 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.158 0.842 43 H 0.170 0.830 44 H 0.206 0.794 45 H 0.091 0.909 46 H 0.239 0.761 47 H -0.205 1.205 48 H -0.202 1.202 49 H 0.139 0.861 50 H 0.158 0.842 51 H 0.166 0.834 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.822 -3.808 -4.674 10.685 hybrid contribution -1.314 0.922 1.176 1.990 sum 7.508 -2.887 -3.498 8.771 Atomic orbital electron populations 1.23493 0.75317 1.05598 1.02096 1.86500 1.24579 1.33139 1.83729 1.24218 0.93010 0.80957 0.70979 1.90675 1.68012 1.37678 1.46442 1.22556 0.85447 1.01511 1.02478 1.23219 0.97821 1.00710 0.94232 1.22023 0.95266 0.89149 0.87164 1.23266 0.97673 0.94573 1.00866 1.22520 0.89707 1.03638 0.98505 1.22830 0.99482 0.96556 0.97535 1.22828 0.77032 1.00286 1.03527 1.48419 1.08510 1.44683 1.31784 1.21015 0.85961 0.81327 0.82633 1.90825 1.17262 1.63522 1.71616 1.21914 0.87488 1.00024 0.93679 1.43420 1.28965 1.16337 1.26155 1.21870 0.94171 0.88644 1.00776 1.19751 1.02084 0.96367 1.00415 1.24289 0.98205 0.93356 0.99984 1.86586 1.61211 1.39611 1.49356 0.94086 0.78644 0.80200 0.81726 1.19352 0.98470 0.95596 0.98805 1.20454 0.98684 0.96967 0.94411 1.20932 0.99802 0.94676 1.01710 1.21146 0.94908 1.00304 0.96038 1.20234 1.02887 0.94357 0.97961 1.18413 0.95677 0.95817 0.91347 0.93027 0.91885 0.84957 0.82160 0.91876 0.87581 0.88353 0.91203 0.87819 0.88364 0.90217 0.87303 0.88500 0.89096 0.84215 0.82993 0.79407 0.90942 0.76054 1.20500 1.20183 0.86057 0.84217 0.83417 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 10.56 113.37 1.20 1.30 16 2 O -0.36 -2.69 10.57 -51.41 -0.54 -3.23 16 3 C 0.46 4.54 7.48 71.23 0.53 5.08 16 4 O -0.54 -9.57 15.65 21.94 0.34 -9.22 16 5 C -0.10 -0.12 4.06 -10.94 -0.04 -0.17 16 6 C -0.12 -0.08 6.68 31.01 0.21 0.12 16 7 C 0.15 -0.50 1.34 4.03 0.01 -0.50 16 8 C -0.13 -0.25 6.54 30.94 0.20 -0.04 16 9 C -0.11 1.18 6.08 31.63 0.19 1.37 16 10 C -0.13 1.69 7.09 32.06 0.23 1.92 16 11 C 0.08 -0.99 6.71 86.84 0.58 -0.41 16 12 N -0.60 2.07 3.17 -766.33 -2.43 -0.36 16 13 C 0.50 1.40 7.58 87.66 0.66 2.07 16 14 O -0.55 -7.58 13.61 -3.03 -0.04 -7.62 16 15 C 0.09 -0.22 5.50 85.63 0.47 0.25 16 16 N -0.47 -2.99 2.27 -519.98 -1.18 -4.17 16 17 C 0.07 0.51 9.89 83.00 0.82 1.33 16 18 C -0.18 -1.94 5.61 -18.63 -0.10 -2.04 16 19 C -0.05 -0.34 3.05 71.24 0.22 -0.12 16 20 O -0.56 -4.57 12.86 -148.98 -1.92 -6.48 16 21 Si 0.75 1.99 30.79 68.60 2.11 4.10 16 22 C -0.12 -1.59 6.35 -20.20 -0.13 -1.72 16 23 C -0.09 -1.00 10.05 22.23 0.22 -0.78 16 24 C -0.15 -1.22 9.97 22.03 0.22 -1.00 16 25 C -0.10 -0.68 10.01 22.30 0.22 -0.46 16 26 C -0.13 -1.03 10.00 22.37 0.22 -0.80 16 27 C 0.09 1.00 6.80 39.03 0.27 1.26 16 28 H 0.05 0.31 8.13 -2.39 -0.02 0.29 16 29 H 0.06 0.23 8.13 -2.38 -0.02 0.21 16 30 H 0.13 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.16 -0.98 8.14 -2.39 -0.02 -1.00 16 32 H 0.06 0.60 6.50 -2.39 -0.02 0.58 16 33 H 0.11 -0.44 8.01 -2.38 -0.02 -0.46 16 34 H 0.10 -0.22 8.01 -2.39 -0.02 -0.24 16 35 H 0.07 0.81 6.03 -2.38 -0.01 0.79 16 36 H 0.10 -1.37 7.86 -2.39 -0.02 -1.39 16 37 H 0.10 -1.25 8.01 -2.39 -0.02 -1.27 16 38 H 0.08 -1.00 8.14 -2.38 -0.02 -1.02 16 39 H 0.11 -1.78 8.14 -2.39 -0.02 -1.80 16 40 H 0.10 -1.45 7.50 -2.39 -0.02 -1.47 16 41 H 0.09 -1.27 8.14 -2.39 -0.02 -1.29 16 42 H 0.14 -1.05 7.86 -2.39 -0.02 -1.07 16 43 H 0.15 -1.40 8.12 -2.39 -0.02 -1.42 16 44 H 0.19 0.28 6.30 -2.91 -0.02 0.26 16 45 H 0.07 0.40 7.96 -2.39 -0.02 0.38 16 46 H 0.39 -0.21 8.74 -74.06 -0.65 -0.85 16 47 H -0.28 -1.61 7.11 99.48 0.71 -0.90 16 48 H -0.28 -1.67 7.04 99.48 0.70 -0.97 16 49 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 50 H 0.14 0.45 8.06 -2.91 -0.02 0.43 16 51 H 0.15 0.12 8.06 -2.91 -0.02 0.09 16 52 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -34.27 424.51 2.88 -31.39 By element: Atomic # 1 Polarization: -11.40 SS G_CDS: 0.33 Total: -11.07 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.20 Total: 6.66 kcal Atomic # 7 Polarization: -0.92 SS G_CDS: -3.61 Total: -4.53 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -2.16 Total: -26.56 kcal Atomic # 14 Polarization: 1.99 SS G_CDS: 2.11 Total: 4.10 kcal Total: -34.27 2.88 -31.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.970 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds