Wall clock time and date at job start Sun Mar 7 2021 03:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 117.00091 * 2 1 4 4 O 1.20826 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50692 * 120.00272 * 179.97438 * 3 2 1 6 6 C 1.53891 * 113.59747 * 179.97438 * 5 3 2 7 7 C 1.53148 * 86.89411 * 139.53318 * 6 5 3 8 8 C 1.53137 * 87.73411 * 334.92642 * 7 6 5 9 9 C 1.53738 * 114.76823 * 218.56838 * 7 6 5 10 10 C 1.55304 * 102.73824 * 251.58174 * 9 7 6 11 11 C 1.55224 * 101.55369 * 324.82735 * 10 9 7 12 12 N 1.46385 * 115.35759 * 92.05423 * 7 6 5 13 13 C 1.34776 * 125.79632 * 311.11422 * 12 7 6 14 14 O 1.21629 * 120.00718 * 6.47294 * 13 12 7 15 15 C 1.47272 * 119.99820 * 186.46762 * 13 12 7 16 16 C 1.36771 * 126.94169 * 186.78215 * 15 13 12 17 17 C 1.50693 * 125.80106 * 359.97438 * 16 15 13 18 18 N 1.34657 * 108.39212 * 179.97438 * 16 15 13 19 19 C 1.36445 * 110.30072 * 359.97438 * 18 16 15 20 20 C 1.50710 * 125.56888 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.46948 * 244.99801 * 20 19 18 22 22 Si 1.86296 * 109.47239 * 5.00178 * 20 19 18 23 23 C 1.34479 * 108.85965 * 359.97438 * 19 18 16 24 24 H 1.09008 * 109.47107 * 60.00310 * 1 2 3 25 25 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47030 * 300.00044 * 1 2 3 27 27 H 1.09005 * 112.83389 * 48.86135 * 5 3 2 28 28 H 1.09006 * 113.64481 * 25.03680 * 6 5 3 29 29 H 1.09005 * 113.73317 * 254.04537 * 6 5 3 30 30 H 1.08998 * 113.64624 * 139.57226 * 8 7 6 31 31 H 1.08995 * 113.63976 * 270.57423 * 8 7 6 32 32 H 1.08995 * 110.76257 * 9.89720 * 9 7 6 33 33 H 1.09005 * 110.75785 * 133.09011 * 9 7 6 34 34 H 1.09002 * 110.98769 * 83.10552 * 10 9 7 35 35 H 1.08990 * 110.99150 * 206.88716 * 10 9 7 36 36 H 1.09001 * 110.50900 * 278.15803 * 11 10 9 37 37 H 1.08997 * 110.33661 * 155.77656 * 11 10 9 38 38 H 1.09001 * 109.47347 * 90.00701 * 17 16 15 39 39 H 1.09004 * 109.46740 * 210.00473 * 17 16 15 40 40 H 1.08995 * 109.47310 * 329.99967 * 17 16 15 41 41 H 0.97004 * 124.84678 * 179.97438 * 18 16 15 42 42 H 1.09004 * 109.46418 * 124.99730 * 20 19 18 43 43 H 0.96695 * 113.99911 * 59.99856 * 21 20 19 44 44 H 1.48493 * 110.00212 * 58.67368 * 22 20 19 45 45 H 1.48498 * 110.00014 * 180.02562 * 22 20 19 46 46 H 1.07999 * 126.83503 * 180.26584 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1076 2.7155 -0.0001 7 6 5.1671 2.2292 0.9931 8 6 4.1907 1.1214 1.3988 9 6 5.5091 3.2282 2.1105 10 6 6.9331 3.7073 1.7174 11 6 7.5414 2.4126 1.1148 12 7 6.4228 1.7713 0.3962 13 6 6.5380 0.9066 -0.6312 14 8 5.5444 0.5263 -1.2206 15 6 7.8673 0.4221 -1.0402 16 6 8.1616 -0.3473 -2.1320 17 6 7.1688 -0.8576 -3.1443 18 7 9.4893 -0.5712 -2.1485 19 6 10.0855 0.0385 -1.0834 20 6 11.5591 0.0098 -0.7688 21 8 11.7702 -0.6876 0.4605 22 14 12.4703 -0.8605 -2.1410 23 6 9.1433 0.6692 -0.3602 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 4.0236 0.6369 -0.7557 28 1 3.4143 3.4433 0.4217 29 1 4.5191 3.0291 -0.9596 30 1 4.6685 0.1551 1.5604 31 1 3.5206 1.4049 2.2103 32 1 4.8074 4.0622 2.1113 33 1 5.5194 2.7331 3.0816 34 1 6.8859 4.5035 0.9745 35 1 7.4934 4.0281 2.5955 36 1 7.9084 1.7589 1.9060 37 1 8.3459 2.6590 0.4218 38 1 7.0657 -0.1312 -3.9504 39 1 7.5204 -1.8054 -3.5520 40 1 6.2023 -1.0056 -2.6627 41 1 9.9553 -1.0916 -2.8216 42 1 11.9307 1.0303 -0.6761 43 1 11.4627 -1.6043 0.4504 44 1 12.2328 -0.1633 -3.4304 45 1 13.9245 -0.8960 -1.8425 46 1 9.2962 1.2458 0.5401 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_9865296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:37:43 Heat of formation + Delta-G solvation = -46.015972 kcal Electronic energy + Delta-G solvation = -30416.921071 eV Core-core repulsion = 26276.179184 eV Total energy + Delta-G solvation = -4140.741887 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.76195 -42.17879 -41.04849 -38.78846 -37.69461 -37.64903 -36.65267 -33.07036 -32.75469 -31.69095 -29.72860 -28.88749 -28.17355 -26.94526 -26.09356 -24.92588 -24.00118 -23.02587 -21.84606 -21.32649 -20.42580 -19.08811 -18.82226 -18.47501 -18.05700 -17.49939 -17.29649 -17.06995 -16.64177 -16.49752 -16.21625 -15.76262 -15.51400 -15.05299 -14.95986 -14.88452 -14.68341 -14.40578 -14.17939 -14.00269 -13.99068 -13.70175 -13.52551 -13.39349 -13.31742 -13.21429 -12.85540 -12.73907 -12.58949 -12.52151 -12.22690 -12.03672 -11.89309 -11.86052 -11.61139 -11.40413 -11.14000 -10.58628 -10.25823 -9.91488 -9.66676 -9.11236 -5.14148 0.67292 1.10510 1.16411 1.26251 1.52310 1.78861 1.82475 1.93004 2.22294 2.43904 3.26478 3.39908 3.45392 3.54743 3.63082 3.71700 3.76362 3.88817 3.97770 4.07822 4.18326 4.20654 4.24634 4.25342 4.32298 4.43689 4.47425 4.53642 4.59486 4.64179 4.66234 4.72116 4.74667 4.78293 4.80896 4.94885 4.97749 5.01665 5.05418 5.10950 5.24804 5.30427 5.31471 5.39434 5.55307 5.72405 5.90150 6.45093 6.56178 6.69257 6.73627 7.36398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.545 6.545 5 C -0.149 4.149 6 C -0.115 4.115 7 C 0.149 3.851 8 C -0.114 4.114 9 C -0.114 4.114 10 C -0.129 4.129 11 C 0.094 3.906 12 N -0.593 5.593 13 C 0.604 3.396 14 O -0.561 6.561 15 C -0.261 4.261 16 C 0.123 3.877 17 C -0.100 4.100 18 N -0.534 5.534 19 C -0.025 4.025 20 C -0.036 4.036 21 O -0.548 6.548 22 Si 0.762 3.238 23 C -0.145 4.145 24 H 0.058 0.942 25 H 0.129 0.871 26 H 0.062 0.938 27 H 0.181 0.819 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.426 0.574 42 H 0.124 0.876 43 H 0.396 0.604 44 H -0.279 1.279 45 H -0.291 1.291 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -3.512 0.999 6.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.314 3.686 4 O -0.436 6.436 5 C -0.166 4.166 6 C -0.153 4.153 7 C 0.062 3.938 8 C -0.153 4.153 9 C -0.152 4.152 10 C -0.167 4.167 11 C -0.028 4.028 12 N -0.324 5.324 13 C 0.399 3.601 14 O -0.445 6.445 15 C -0.271 4.271 16 C 0.003 3.997 17 C -0.157 4.157 18 N -0.134 5.134 19 C -0.134 4.134 20 C -0.147 4.147 21 O -0.355 6.355 22 Si 0.667 3.333 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.147 0.853 26 H 0.081 0.919 27 H 0.197 0.803 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.268 0.732 42 H 0.141 0.859 43 H 0.246 0.754 44 H -0.206 1.206 45 H -0.218 1.218 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.951 -2.922 0.132 6.631 hybrid contribution -0.540 0.532 -0.212 0.787 sum 5.411 -2.390 -0.080 5.916 Atomic orbital electron populations 1.23518 0.75318 1.05545 1.02337 1.86545 1.24647 1.33429 1.83574 1.24455 0.92880 0.80820 0.70462 1.90606 1.68104 1.37373 1.47473 1.24113 0.85155 1.02939 1.04409 1.23121 0.97246 0.94736 1.00214 1.21391 0.84119 0.94610 0.93633 1.23137 0.97543 1.00059 0.94532 1.22543 0.98099 0.97674 0.96859 1.22909 0.95421 0.96232 1.02143 1.22951 0.89275 0.94127 0.96421 1.47948 1.07437 1.44169 1.32802 1.17346 0.87908 0.76808 0.78062 1.90148 1.37991 1.60781 1.55560 1.20029 0.92739 1.12383 1.01946 1.20533 0.84370 0.97628 0.97130 1.20658 0.97087 1.01810 0.96117 1.41705 1.06186 1.42362 1.23151 1.20730 0.96250 1.04099 0.92288 1.24560 0.91620 1.02202 0.96342 1.86516 1.84458 1.30614 1.33936 0.94354 0.78603 0.86731 0.73615 1.22398 0.89672 1.03363 1.01446 0.92327 0.85289 0.91924 0.80339 0.88523 0.91775 0.90294 0.88158 0.89201 0.88650 0.90759 0.87474 0.89624 0.89164 0.90136 0.88895 0.89401 0.73207 0.85860 0.75407 1.20553 1.21825 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.30 16 2 O -0.37 -3.77 10.57 -51.44 -0.54 -4.32 16 3 C 0.47 5.79 7.48 71.23 0.53 6.33 16 4 O -0.54 -9.24 15.64 21.97 0.34 -8.90 16 5 C -0.15 -1.32 3.61 -10.94 -0.04 -1.36 16 6 C -0.11 -0.79 6.38 30.94 0.20 -0.59 16 7 C 0.15 0.33 1.44 3.97 0.01 0.34 16 8 C -0.11 -0.46 6.83 30.94 0.21 -0.25 16 9 C -0.11 0.37 6.30 31.63 0.20 0.57 16 10 C -0.13 0.71 7.10 32.15 0.23 0.94 16 11 C 0.09 -0.32 5.14 86.93 0.45 0.13 16 12 N -0.59 -1.43 3.17 -770.08 -2.44 -3.87 16 13 C 0.60 3.82 7.55 86.62 0.65 4.48 16 14 O -0.56 -5.82 10.37 -4.12 -0.04 -5.86 16 15 C -0.26 -0.85 6.18 -19.04 -0.12 -0.96 16 16 C 0.12 0.02 7.17 41.78 0.30 0.32 16 17 C -0.10 0.17 9.95 71.23 0.71 0.88 16 18 N -0.53 2.42 5.41 -171.07 -0.93 1.49 16 19 C -0.03 0.08 6.09 40.98 0.25 0.33 16 20 C -0.04 0.19 2.98 71.24 0.21 0.40 16 21 O -0.55 2.27 12.88 -148.98 -1.92 0.35 16 22 Si 0.76 -5.27 30.96 68.60 2.12 -3.14 16 23 C -0.15 0.05 9.16 23.62 0.22 0.26 16 24 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 25 H 0.13 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.06 0.24 8.13 -2.39 -0.02 0.23 16 27 H 0.18 2.14 4.12 -77.86 -0.32 1.82 16 28 H 0.10 0.72 7.21 -2.38 -0.02 0.70 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.22 8.08 -2.39 -0.02 0.21 16 32 H 0.09 -0.31 7.79 -2.39 -0.02 -0.33 16 33 H 0.09 -0.52 8.11 -2.38 -0.02 -0.54 16 34 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H 0.09 -0.46 7.74 -2.39 -0.02 -0.48 16 37 H 0.09 -0.35 5.98 -2.39 -0.01 -0.36 16 38 H 0.08 -0.15 8.14 -2.39 -0.02 -0.16 16 39 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.09 0.25 6.35 -2.39 -0.02 0.24 16 41 H 0.43 -4.35 6.72 -92.71 -0.62 -4.97 16 42 H 0.12 -0.58 7.96 -2.39 -0.02 -0.60 16 43 H 0.40 -4.55 8.70 -74.06 -0.64 -5.19 16 44 H -0.28 0.63 7.11 99.48 0.71 1.33 16 45 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 46 H 0.16 -0.46 5.17 -2.91 -0.02 -0.48 16 Total: 0.00 -21.78 364.32 1.30 -20.48 By element: Atomic # 1 Polarization: -8.84 SS G_CDS: -0.51 Total: -9.35 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.20 Total: 13.11 kcal Atomic # 7 Polarization: 0.99 SS G_CDS: -3.36 Total: -2.38 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -2.16 Total: -18.73 kcal Atomic # 14 Polarization: -5.27 SS G_CDS: 2.12 Total: -3.14 kcal Total: -21.78 1.30 -20.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_9865296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.533 kcal (2) G-P(sol) polarization free energy of solvation -21.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds