Wall clock time and date at job start Sun Mar 7 2021 04:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34852 * 125.89723 * 2 1 4 4 C 1.40943 * 107.46493 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.26680 * 179.97438 * 4 3 2 6 6 O 1.42895 * 109.47034 * 254.98122 * 5 4 3 7 7 Si 1.86296 * 109.46927 * 14.97809 * 5 4 3 8 8 C 1.34851 * 107.46605 * 0.02562 * 4 3 2 9 9 C 1.50703 * 125.89598 * 180.02562 * 8 4 3 10 10 N 1.36559 * 108.20023 * 359.73325 * 8 4 3 11 11 C 1.40233 * 125.66686 * 180.26252 * 10 8 4 12 12 C 1.38912 * 119.99350 * 90.22290 * 11 10 8 13 13 C 1.50705 * 119.88259 * 359.95463 * 12 11 10 14 14 C 1.38258 * 120.22748 * 179.97438 * 12 11 10 15 15 C 1.37977 * 120.21868 * 359.97438 * 14 12 11 16 16 C 1.39615 * 119.98392 * 359.97438 * 15 14 12 17 17 C 1.47864 * 120.10931 * 180.02562 * 16 15 14 18 18 O 1.21553 * 119.99458 * 180.02562 * 17 16 15 19 19 N 1.34770 * 120.00162 * 359.97438 * 17 16 15 20 20 C 1.46501 * 119.99798 * 179.97438 * 19 17 16 21 21 H 1.08998 * 112.85019 * 23.81355 * 20 19 17 22 22 C 1.53783 * 113.61120 * 155.00398 * 20 19 17 23 23 C 1.53779 * 87.08385 * 139.98288 * 22 20 19 24 24 H 1.09009 * 113.61288 * 89.19540 * 23 22 20 25 25 C 1.52993 * 113.62079 * 220.01954 * 23 22 20 26 26 F 1.39898 * 109.47670 * 184.99828 * 25 23 22 27 27 C 1.53782 * 113.61869 * 252.49914 * 20 19 17 28 28 C 1.38591 * 119.99671 * 269.94507 * 11 10 8 29 29 H 1.09002 * 109.47152 * 90.02525 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02625 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02606 * 1 2 3 32 32 H 1.08001 * 126.26710 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47099 * 134.97712 * 5 4 3 34 34 H 0.96695 * 114.00304 * 60.00052 * 6 5 4 35 35 H 1.48504 * 110.00020 * 179.97438 * 7 5 4 36 36 H 1.48503 * 110.00029 * 301.32026 * 7 5 4 37 37 H 1.08996 * 109.47364 * 89.97382 * 9 8 4 38 38 H 1.09007 * 109.47009 * 209.97462 * 9 8 4 39 39 H 1.09000 * 109.47127 * 329.97097 * 9 8 4 40 40 H 1.09000 * 109.46932 * 90.00214 * 13 12 11 41 41 H 1.09001 * 109.46874 * 210.00127 * 13 12 11 42 42 H 1.08995 * 109.47421 * 329.99947 * 13 12 11 43 43 H 1.07998 * 119.89183 * 179.97438 * 14 12 11 44 44 H 1.08001 * 120.00383 * 180.02562 * 15 14 12 45 45 H 0.97001 * 120.00277 * 0.02562 * 19 17 16 46 46 H 1.09006 * 113.61523 * 254.53523 * 22 20 19 47 47 H 1.09004 * 113.61837 * 25.35155 * 22 20 19 48 48 H 1.09007 * 109.46859 * 305.00238 * 25 23 22 49 49 H 1.09002 * 109.47167 * 64.99700 * 25 23 22 50 50 H 1.09001 * 113.61373 * 334.57644 * 27 20 19 51 51 H 1.08999 * 113.61083 * 105.46947 * 27 20 19 52 52 H 1.08000 * 120.10536 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0924 0.0000 4 6 3.6348 0.6468 0.0006 5 6 4.8648 1.5176 0.0003 6 8 5.4555 1.5071 -1.3008 7 14 4.3909 3.2615 0.4529 8 6 3.6121 -0.7016 0.0004 9 6 4.8178 -1.6056 0.0014 10 7 2.3078 -1.1062 0.0057 11 6 1.8644 -2.4365 0.0124 12 6 1.6438 -3.0889 1.2188 13 6 1.8827 -2.3647 2.5187 14 6 1.2061 -4.4003 1.2311 15 6 0.9851 -5.0697 0.0451 16 6 1.2030 -4.4224 -1.1726 17 6 0.9664 -5.1370 -2.4453 18 8 1.1572 -4.5716 -3.5042 19 7 0.5403 -6.4155 -2.4312 20 6 0.3054 -7.1233 -3.6922 21 1 0.8727 -6.7057 -4.5239 22 6 0.4235 -8.6519 -3.5718 23 6 -0.7907 -8.7409 -4.5113 24 1 -0.5241 -8.7671 -5.5680 25 6 -1.7875 -9.8346 -4.1228 26 9 -2.7927 -9.9154 -5.0925 27 6 -1.1837 -7.3420 -4.0078 28 6 1.6409 -3.0985 -1.1845 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9669 2.1205 -0.0004 33 1 5.5808 1.1353 0.7276 34 1 4.8735 1.8352 -1.9998 35 1 5.5953 4.1304 0.4568 36 1 3.3908 3.7831 -0.5130 37 1 5.1079 -1.8234 1.0292 38 1 4.5750 -2.5358 -0.5125 39 1 5.6428 -1.1117 -0.5120 40 1 0.9656 -1.8645 2.8299 41 1 2.1836 -3.0807 3.2835 42 1 2.6718 -1.6251 2.3829 43 1 1.0367 -4.9024 2.1722 44 1 0.6428 -6.0940 0.0587 45 1 0.3884 -6.8669 -1.5861 46 1 1.3400 -9.0544 -4.0033 47 1 0.2283 -9.0272 -2.5672 48 1 -1.2694 -10.7913 -4.0559 49 1 -2.2326 -9.5942 -3.1573 50 1 -1.8197 -7.3592 -3.1228 51 1 -1.5647 -6.6870 -4.7913 52 1 1.8081 -2.5915 -2.1233 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12335842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:01 Heat of formation + Delta-G solvation = -17.699256 kcal Electronic energy + Delta-G solvation = -33914.461993 eV Core-core repulsion = 29375.330900 eV Total energy + Delta-G solvation = -4539.131093 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -48.54772 -42.95917 -41.54017 -40.18465 -39.14642 -37.83885 -35.24028 -34.20644 -33.69967 -33.63475 -30.67336 -30.15698 -29.67995 -28.37042 -27.15343 -26.76997 -24.82377 -24.48343 -23.67739 -22.95516 -21.92344 -21.17618 -20.82022 -20.15194 -18.73395 -17.96955 -17.62044 -17.41604 -17.12671 -16.84808 -16.77868 -16.61433 -16.20745 -16.09005 -15.82766 -15.68256 -15.51694 -15.17061 -15.04470 -14.81037 -14.72935 -14.55906 -14.27748 -14.16135 -13.96032 -13.69996 -13.48904 -13.44528 -13.37435 -13.18661 -13.13625 -13.00113 -12.94299 -12.82334 -12.68919 -12.50109 -12.38959 -12.16914 -12.07575 -11.70038 -11.52517 -11.34139 -11.13681 -10.51871 -10.27605 -10.18901 -9.88940 -9.72644 -8.82856 -4.85788 -0.45746 -0.04250 1.06218 1.42593 1.56163 1.65585 1.74288 1.78508 1.99982 2.05760 2.52586 3.33299 3.37442 3.42977 3.55404 3.59483 3.62625 3.67295 3.72268 3.75933 3.88092 3.97772 4.07879 4.11057 4.15511 4.22163 4.26733 4.31190 4.38375 4.41764 4.55000 4.56654 4.60304 4.64973 4.66166 4.67145 4.67331 4.68858 4.73434 4.75524 4.78215 4.94348 4.96465 5.00532 5.01461 5.02156 5.03829 5.11746 5.12936 5.20297 5.27377 5.35778 5.46895 5.56376 5.98714 6.14797 6.37340 6.48214 6.55276 7.03912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.020 3.980 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.047 4.047 6 O -0.553 6.553 7 Si 0.778 3.222 8 C 0.041 3.959 9 C -0.082 4.082 10 N -0.400 5.400 11 C 0.088 3.912 12 C -0.040 4.040 13 C -0.121 4.121 14 C -0.110 4.110 15 C -0.054 4.054 16 C -0.145 4.145 17 C 0.557 3.443 18 O -0.585 6.585 19 N -0.695 5.695 20 C 0.114 3.886 21 H 0.091 0.909 22 C -0.117 4.117 23 C -0.142 4.142 24 H 0.095 0.905 25 C 0.066 3.934 26 F -0.242 7.242 27 C -0.147 4.147 28 C -0.059 4.059 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.381 0.619 35 H -0.305 1.305 36 H -0.290 1.290 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.176 0.824 44 H 0.172 0.828 45 H 0.419 0.581 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.104 0.896 51 H 0.055 0.945 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -6.844 9.996 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.224 4.224 4 C -0.208 4.208 5 C -0.157 4.157 6 O -0.361 6.361 7 Si 0.685 3.315 8 C -0.069 4.069 9 C -0.139 4.139 10 N -0.075 5.075 11 C -0.001 4.001 12 C -0.041 4.041 13 C -0.177 4.177 14 C -0.128 4.128 15 C -0.072 4.072 16 C -0.149 4.149 17 C 0.346 3.654 18 O -0.466 6.466 19 N -0.347 5.347 20 C 0.009 3.991 21 H 0.110 0.890 22 C -0.155 4.155 23 C -0.161 4.161 24 H 0.114 0.886 25 C 0.012 3.988 26 F -0.223 7.223 27 C -0.186 4.186 28 C -0.079 4.079 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.133 0.867 34 H 0.230 0.770 35 H -0.234 1.234 36 H -0.217 1.217 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.078 0.922 43 H 0.194 0.806 44 H 0.189 0.811 45 H 0.258 0.742 46 H 0.105 0.895 47 H 0.138 0.862 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.122 0.878 51 H 0.074 0.926 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.460 -6.207 9.316 11.461 hybrid contribution -0.029 0.074 -1.841 1.842 sum -2.488 -6.133 7.475 9.985 Atomic orbital electron populations 1.20357 0.86829 1.04121 1.02666 1.20727 0.94300 0.84898 1.08960 1.20758 0.91957 0.98144 1.11514 1.19629 0.95002 0.92669 1.13470 1.24492 0.94647 1.09554 0.86989 1.86523 1.44649 1.87254 1.17677 0.93889 0.76868 0.71794 0.88976 1.20486 0.84386 0.94256 1.07771 1.20313 0.93274 0.97071 1.03273 1.41347 1.05375 1.03070 1.57692 1.17426 1.05290 0.84027 0.93354 1.20564 0.94238 0.94979 0.94301 1.20921 1.03011 1.00797 0.92972 1.21383 0.98730 0.92638 1.00068 1.21772 0.94347 1.01077 0.89993 1.19702 1.07024 0.94349 0.93844 1.18528 0.75999 0.82403 0.88486 1.90793 1.53733 1.68141 1.33962 1.45721 1.66843 1.11735 1.10410 1.22532 0.96744 0.92908 0.86940 0.89039 1.23290 0.98102 0.92551 1.01567 1.22948 0.97057 0.94941 1.01202 0.88647 1.22255 0.86078 1.00600 0.89882 1.92739 1.64446 1.97757 1.67380 1.23599 0.96641 0.96374 1.01985 1.21176 0.95457 0.94067 0.97200 0.91665 0.88271 0.91567 0.83256 0.86725 0.77031 1.23368 1.21658 0.89564 0.92723 0.90137 0.89569 0.88444 0.92163 0.80650 0.81085 0.74179 0.89471 0.86171 0.88656 0.88619 0.87792 0.92578 0.87361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 10.09 71.24 0.72 0.71 16 2 C 0.02 0.09 6.86 41.05 0.28 0.37 16 3 C -0.20 -0.93 9.27 22.15 0.21 -0.72 16 4 C -0.20 -1.08 5.35 -19.98 -0.11 -1.19 16 5 C -0.05 -0.19 2.50 71.24 0.18 -0.01 16 6 O -0.55 -4.11 12.88 -148.98 -1.92 -6.03 16 7 Si 0.78 1.63 30.86 68.60 2.12 3.75 16 8 C 0.04 0.24 6.33 41.05 0.26 0.50 16 9 C -0.08 -0.28 9.87 71.24 0.70 0.42 16 10 N -0.40 -1.94 1.85 -320.36 -0.59 -2.54 16 11 C 0.09 0.24 4.49 38.04 0.17 0.41 16 12 C -0.04 0.12 5.90 -19.70 -0.12 0.00 16 13 C -0.12 0.64 9.76 71.24 0.70 1.33 16 14 C -0.11 0.89 9.67 22.21 0.21 1.10 16 15 C -0.05 0.40 9.54 22.54 0.21 0.62 16 16 C -0.15 -0.16 5.87 -20.10 -0.12 -0.27 16 17 C 0.56 2.64 7.77 86.79 0.67 3.32 16 18 O -0.59 -8.94 15.94 -3.88 -0.06 -9.00 16 19 N -0.70 2.54 5.31 -442.89 -2.35 0.19 16 20 C 0.11 -0.26 4.24 45.52 0.19 -0.07 16 21 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 22 C -0.12 1.03 7.39 31.12 0.23 1.26 16 23 C -0.14 0.72 4.10 -10.27 -0.04 0.68 16 24 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 25 C 0.07 -0.37 7.39 71.98 0.53 0.16 16 26 F -0.24 -0.91 17.36 44.97 0.78 -0.13 16 27 C -0.15 0.42 7.43 31.12 0.23 0.65 16 28 C -0.06 -0.33 9.51 22.65 0.22 -0.12 16 29 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.10 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.07 -0.05 7.83 -2.38 -0.02 -0.07 16 32 H 0.15 0.32 6.52 -2.91 -0.02 0.30 16 33 H 0.11 0.24 7.96 -2.39 -0.02 0.22 16 34 H 0.38 1.22 8.70 -74.06 -0.64 0.57 16 35 H -0.31 -2.75 7.11 99.48 0.71 -2.04 16 36 H -0.29 -1.89 7.01 99.48 0.70 -1.19 16 37 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.05 0.25 7.84 -2.38 -0.02 0.23 16 39 H 0.08 0.38 7.87 -2.39 -0.02 0.37 16 40 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.10 -0.91 8.08 -2.39 -0.02 -0.93 16 42 H 0.06 -0.08 6.99 -2.39 -0.02 -0.10 16 43 H 0.18 -2.58 8.06 -2.91 -0.02 -2.60 16 44 H 0.17 -2.69 6.40 -2.91 -0.02 -2.71 16 45 H 0.42 -4.93 6.76 -92.71 -0.63 -5.55 16 46 H 0.09 -0.75 8.14 -2.38 -0.02 -0.77 16 47 H 0.12 -1.71 8.08 -2.38 -0.02 -1.73 16 48 H 0.10 -0.86 8.14 -2.38 -0.02 -0.88 16 49 H 0.10 -0.92 7.84 -2.39 -0.02 -0.94 16 50 H 0.10 -0.62 7.90 -2.39 -0.02 -0.64 16 51 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 52 H 0.11 1.27 7.65 -2.91 -0.02 1.25 16 Total: 0.00 -25.56 428.74 3.02 -22.54 By element: Atomic # 1 Polarization: -17.64 SS G_CDS: -0.29 Total: -17.93 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.34 Total: 9.14 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -2.94 Total: -2.35 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.98 Total: -15.03 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.78 Total: -0.13 kcal Atomic # 14 Polarization: 1.63 SS G_CDS: 2.12 Total: 3.75 kcal Total: -25.56 3.02 -22.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12335842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.845 kcal (2) G-P(sol) polarization free energy of solvation -25.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds