Wall clock time and date at job start Sun Mar 7 2021 04:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34851 * 125.90271 * 2 1 4 4 C 1.40943 * 107.46679 * 180.15505 * 3 2 1 5 5 C 1.50702 * 126.26344 * 179.82661 * 4 3 2 6 6 O 1.42892 * 109.47242 * 254.69427 * 5 4 3 7 7 Si 1.86298 * 109.46915 * 14.69965 * 5 4 3 8 8 C 1.34851 * 107.46870 * 359.57148 * 4 3 2 9 9 C 1.50697 * 125.89984 * 180.28070 * 8 4 3 10 10 N 1.36569 * 108.20019 * 0.26248 * 8 4 3 11 11 C 1.40200 * 125.66970 * 179.97438 * 10 8 4 12 12 C 1.38824 * 120.06201 * 294.72196 * 11 10 8 13 13 C 1.38128 * 119.93193 * 179.76677 * 12 11 10 14 14 C 1.38274 * 120.06608 * 0.48298 * 13 12 11 15 15 C 1.50696 * 119.93390 * 179.76480 * 14 13 12 16 16 C 1.50709 * 109.47222 * 270.02075 * 15 14 13 17 17 O 1.21277 * 119.99819 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99820 * 179.97438 * 16 15 14 19 19 C 1.46492 * 119.99867 * 180.02562 * 18 16 15 20 20 H 1.09002 * 112.85058 * 25.33938 * 19 18 16 21 21 C 1.53779 * 113.61702 * 156.52846 * 19 18 16 22 22 C 1.53781 * 87.08520 * 139.98247 * 21 19 18 23 23 H 1.08998 * 113.61323 * 89.20132 * 22 21 19 24 24 C 1.52998 * 113.61834 * 220.02267 * 22 21 19 25 25 F 1.39893 * 109.47477 * 184.99892 * 24 22 21 26 26 C 1.53779 * 113.61763 * 254.13489 * 19 18 16 27 27 C 1.38280 * 120.13112 * 359.79197 * 14 13 12 28 28 C 1.38121 * 120.06345 * 359.95510 * 27 14 13 29 29 H 1.08998 * 109.46887 * 270.32276 * 1 2 3 30 30 H 1.08998 * 109.46765 * 30.32016 * 1 2 3 31 31 H 1.08995 * 109.47175 * 150.32324 * 1 2 3 32 32 H 1.07996 * 126.26249 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.46724 * 134.69473 * 5 4 3 34 34 H 0.96703 * 114.00176 * 180.02562 * 6 5 4 35 35 H 1.48506 * 109.99834 * 178.68053 * 7 5 4 36 36 H 1.48502 * 110.00011 * 299.99318 * 7 5 4 37 37 H 1.08999 * 109.46992 * 89.97268 * 9 8 4 38 38 H 1.08998 * 109.47527 * 209.97832 * 9 8 4 39 39 H 1.09003 * 109.46963 * 329.97700 * 9 8 4 40 40 H 1.07997 * 120.03472 * 359.97438 * 12 11 10 41 41 H 1.08005 * 119.96390 * 180.22654 * 13 12 11 42 42 H 1.08996 * 109.47645 * 30.02620 * 15 14 13 43 43 H 1.09004 * 109.46956 * 150.02584 * 15 14 13 44 44 H 0.97006 * 119.99959 * 0.02562 * 18 16 15 45 45 H 1.09004 * 113.61932 * 254.53257 * 21 19 18 46 46 H 1.09008 * 113.61676 * 25.43394 * 21 19 18 47 47 H 1.09003 * 109.47066 * 305.00162 * 24 22 21 48 48 H 1.09007 * 109.47073 * 64.99328 * 24 22 21 49 49 H 1.08995 * 113.61351 * 334.57514 * 26 19 18 50 50 H 1.09004 * 113.61132 * 105.47282 * 26 19 18 51 51 H 1.07996 * 119.96549 * 179.97438 * 27 14 13 52 52 H 1.08005 * 120.03394 * 180.02562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0923 0.0000 4 6 3.6349 0.6466 -0.0036 5 6 4.8648 1.5174 -0.0086 6 8 5.4550 1.5008 -1.3099 7 14 4.3912 3.2634 0.4363 8 6 3.6122 -0.7017 0.0039 9 6 4.8178 -1.6058 0.0094 10 7 2.3078 -1.1063 0.0061 11 6 1.8644 -2.4364 0.0130 12 6 2.1211 -3.2606 -1.0741 13 6 1.6872 -4.5719 -1.0624 14 6 0.9893 -5.0610 0.0264 15 6 0.5127 -6.4906 0.0337 16 6 -0.8680 -6.5630 -0.5661 17 8 -1.4112 -5.5532 -0.9611 18 7 -1.4985 -7.7501 -0.6645 19 6 -2.8403 -7.8206 -1.2480 20 1 -3.0453 -7.0022 -1.9382 21 6 -3.1943 -9.2062 -1.8133 22 6 -4.6016 -8.9983 -1.2293 23 1 -5.2897 -8.5029 -1.9142 24 6 -5.1959 -10.2591 -0.5984 25 9 -6.5124 -10.0049 -0.1996 26 6 -3.9526 -8.0443 -0.2099 27 6 0.7272 -4.2407 1.1083 28 6 1.1630 -2.9301 1.1046 29 1 -0.3633 0.0058 1.0276 30 1 -0.3633 0.8871 -0.5188 31 1 -0.3633 -0.8928 -0.5088 32 1 1.9670 2.1204 -0.0004 33 1 5.5813 1.1384 0.7202 34 1 6.2534 2.0410 -1.3866 35 1 5.5999 4.1257 0.4660 36 1 3.4146 3.7918 -0.5498 37 1 5.1084 -1.8176 1.0383 38 1 4.5747 -2.5388 -0.4990 39 1 5.6425 -1.1148 -0.5073 40 1 2.6623 -2.8779 -1.9268 41 1 1.8898 -5.2147 -1.9064 42 1 1.1963 -7.1046 -0.5527 43 1 0.4829 -6.8584 1.0594 44 1 -1.0638 -8.5579 -0.3489 45 1 -3.1758 -9.2513 -2.9023 46 1 -2.6436 -10.0224 -1.3455 47 1 -5.1872 -11.0690 -1.3279 48 1 -4.6021 -10.5456 0.2696 49 1 -3.6097 -8.5420 0.6971 50 1 -4.5455 -7.1525 -0.0063 51 1 0.1814 -4.6254 1.9572 52 1 0.9584 -2.2899 1.9500 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12335864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:12 Heat of formation + Delta-G solvation = -19.744944 kcal Electronic energy + Delta-G solvation = -32958.838845 eV Core-core repulsion = 28419.619044 eV Total energy + Delta-G solvation = -4539.219801 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.184 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -48.54922 -42.85176 -41.30491 -40.18914 -39.13875 -37.82227 -34.95575 -34.66259 -33.74564 -32.16546 -32.07346 -30.16662 -29.59121 -28.35677 -26.84293 -26.72188 -24.63715 -24.00226 -23.80627 -22.71904 -21.54629 -21.01465 -20.66761 -20.02164 -18.47231 -18.09597 -17.99695 -17.70810 -17.14264 -17.02234 -16.75170 -16.54464 -16.10777 -15.87974 -15.79112 -15.67215 -15.52484 -15.33626 -15.01389 -14.68091 -14.63451 -14.54801 -14.23970 -14.13506 -13.77631 -13.70011 -13.60138 -13.47613 -13.43272 -13.17506 -13.11882 -12.88637 -12.82355 -12.79285 -12.50469 -12.42934 -12.36951 -12.08914 -12.02984 -11.90106 -11.50210 -11.26581 -10.95439 -10.34764 -10.11990 -10.08079 -10.03388 -9.40884 -8.84207 -4.86779 -0.06452 0.26398 1.11298 1.39740 1.61269 1.62123 1.72013 1.83852 2.03507 2.14498 2.64285 3.36762 3.43408 3.57919 3.61838 3.63635 3.71600 3.74385 3.76852 3.84053 3.97240 3.98646 4.13580 4.14818 4.21913 4.23206 4.26034 4.27507 4.30633 4.40292 4.51558 4.55848 4.57514 4.58810 4.62631 4.65877 4.68163 4.70399 4.74643 4.78622 4.82997 4.91273 4.98546 5.00000 5.01851 5.04599 5.11462 5.15482 5.27170 5.28805 5.34451 5.43955 5.57952 5.73587 5.96108 6.15122 6.50317 6.57443 6.70062 7.28377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.014 3.986 3 C -0.202 4.202 4 C -0.171 4.171 5 C -0.046 4.046 6 O -0.561 6.561 7 Si 0.768 3.232 8 C 0.037 3.963 9 C -0.082 4.082 10 N -0.403 5.403 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.097 4.097 14 C -0.061 4.061 15 C -0.099 4.099 16 C 0.512 3.488 17 O -0.583 6.583 18 N -0.707 5.707 19 C 0.117 3.883 20 H 0.088 0.912 21 C -0.118 4.118 22 C -0.145 4.145 23 H 0.093 0.907 24 C 0.066 3.934 25 F -0.242 7.242 26 C -0.147 4.147 27 C -0.095 4.095 28 C -0.113 4.113 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.389 0.611 35 H -0.284 1.284 36 H -0.305 1.305 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.420 0.580 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.054 0.946 51 H 0.149 0.851 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.820 -9.175 4.133 10.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 C -0.225 4.225 4 C -0.177 4.177 5 C -0.156 4.156 6 O -0.370 6.370 7 Si 0.674 3.326 8 C -0.073 4.073 9 C -0.139 4.139 10 N -0.077 5.077 11 C 0.011 3.989 12 C -0.140 4.140 13 C -0.115 4.115 14 C -0.062 4.062 15 C -0.138 4.138 16 C 0.300 3.700 17 O -0.463 6.463 18 N -0.359 5.359 19 C 0.012 3.988 20 H 0.106 0.894 21 C -0.156 4.156 22 C -0.164 4.164 23 H 0.111 0.889 24 C 0.012 3.988 25 F -0.223 7.223 26 C -0.186 4.186 27 C -0.113 4.113 28 C -0.132 4.132 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.102 0.898 34 H 0.239 0.761 35 H -0.211 1.211 36 H -0.233 1.233 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.139 0.861 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.258 0.742 45 H 0.102 0.898 46 H 0.136 0.864 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.120 0.880 50 H 0.072 0.928 51 H 0.167 0.833 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.797 -8.340 3.502 9.222 hybrid contribution 0.701 0.225 -1.027 1.263 sum 2.498 -8.115 2.476 8.844 Atomic orbital electron populations 1.20342 0.86762 1.03169 1.03525 1.20731 0.94397 0.85007 1.09363 1.20740 0.92213 0.98067 1.11526 1.18754 0.93788 0.92209 1.12920 1.24216 0.94486 1.09915 0.86956 1.86586 1.46527 1.72397 1.31499 0.93941 0.78414 0.72127 0.88094 1.20609 0.84682 0.94329 1.07654 1.20363 0.92866 0.97362 1.03317 1.41516 1.05530 1.03529 1.57164 1.17831 1.01905 0.82951 0.96194 1.21197 1.01247 0.94665 0.96877 1.21127 0.97309 0.94535 0.98524 1.19665 0.96548 0.96054 0.93886 1.20799 0.92948 0.94069 1.05950 1.21068 0.88092 0.83071 0.77774 1.90756 1.68869 1.36486 1.50139 1.45873 1.17447 1.09911 1.62693 1.22369 0.81553 0.98982 0.95894 0.89406 1.23266 0.93967 0.96278 1.02120 1.22996 0.97482 0.96829 0.99118 0.88870 1.22254 0.77438 0.97839 1.01311 1.92736 1.40810 1.95882 1.92907 1.23604 0.97088 0.99536 0.98324 1.21171 0.98473 0.92427 0.99268 1.21237 0.98406 0.96604 0.96931 0.89597 0.89298 0.92722 0.83607 0.89802 0.76100 1.21080 1.23318 0.89899 0.91613 0.89759 0.86099 0.83669 0.84628 0.84499 0.74177 0.89758 0.86440 0.88832 0.88697 0.87957 0.92751 0.83308 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 9.94 71.24 0.71 0.33 16 2 C 0.01 0.12 6.81 41.04 0.28 0.40 16 3 C -0.20 -1.92 9.27 22.15 0.21 -1.72 16 4 C -0.17 -1.60 5.39 -19.98 -0.11 -1.71 16 5 C -0.05 -0.23 2.49 71.24 0.18 -0.06 16 6 O -0.56 -3.96 12.86 -148.98 -1.92 -5.88 16 7 Si 0.77 2.48 30.83 68.60 2.11 4.59 16 8 C 0.04 0.33 6.81 41.04 0.28 0.61 16 9 C -0.08 -0.31 9.87 71.23 0.70 0.39 16 10 N -0.40 -3.60 2.79 -320.26 -0.89 -4.49 16 11 C 0.10 0.65 4.83 38.08 0.18 0.83 16 12 C -0.12 -0.62 8.80 22.38 0.20 -0.42 16 13 C -0.10 -0.11 9.69 22.25 0.22 0.11 16 14 C -0.06 0.06 4.38 -19.85 -0.09 -0.03 16 15 C -0.10 0.78 5.83 29.10 0.17 0.95 16 16 C 0.51 -0.58 7.82 87.66 0.69 0.10 16 17 O -0.58 -5.93 15.65 -3.02 -0.05 -5.98 16 18 N -0.71 4.80 5.36 -440.05 -2.36 2.45 16 19 C 0.12 -0.43 4.21 45.52 0.19 -0.24 16 20 H 0.09 0.23 7.50 -2.39 -0.02 0.21 16 21 C -0.12 1.06 7.39 31.12 0.23 1.29 16 22 C -0.14 0.73 4.10 -10.21 -0.04 0.68 16 23 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 24 C 0.07 -0.35 7.39 71.98 0.53 0.18 16 25 F -0.24 -0.96 17.36 44.97 0.78 -0.18 16 26 C -0.15 0.50 7.44 31.18 0.23 0.73 16 27 C -0.09 -0.01 9.69 22.25 0.22 0.20 16 28 C -0.11 -0.39 9.73 22.38 0.22 -0.17 16 29 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.05 0.37 7.83 -2.39 -0.02 0.35 16 32 H 0.15 1.06 6.55 -2.91 -0.02 1.04 16 33 H 0.08 0.07 7.96 -2.39 -0.02 0.05 16 34 H 0.39 -0.63 8.74 -74.06 -0.65 -1.28 16 35 H -0.28 -1.65 7.11 99.48 0.71 -0.94 16 36 H -0.31 -3.41 7.06 99.48 0.70 -2.71 16 37 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 0.21 6.87 -2.39 -0.02 0.20 16 39 H 0.08 0.31 7.87 -2.39 -0.02 0.29 16 40 H 0.12 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.15 -0.43 8.06 -2.91 -0.02 -0.45 16 42 H 0.14 -1.81 8.08 -2.39 -0.02 -1.83 16 43 H 0.14 -1.86 8.08 -2.38 -0.02 -1.87 16 44 H 0.42 -5.99 8.71 -92.70 -0.81 -6.80 16 45 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.12 -1.64 8.07 -2.38 -0.02 -1.65 16 47 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.09 -0.87 7.85 -2.38 -0.02 -0.89 16 49 H 0.10 -0.65 7.90 -2.39 -0.02 -0.67 16 50 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 51 H 0.15 -0.65 8.06 -2.91 -0.02 -0.67 16 52 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 Total: 0.00 -27.44 432.16 2.39 -25.05 By element: Atomic # 1 Polarization: -17.56 SS G_CDS: -0.48 Total: -18.04 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.19 Total: 2.48 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -3.25 Total: -2.05 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -1.96 Total: -11.86 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.78 Total: -0.18 kcal Atomic # 14 Polarization: 2.48 SS G_CDS: 2.11 Total: 4.59 kcal Total: -27.44 2.39 -25.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12335864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.310 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds