Wall clock time and date at job start Sun Mar 7 2021 04:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39284 * 121.03202 * 2 1 4 4 C 1.46495 * 134.19867 * 359.85896 * 3 2 1 5 5 C 1.50698 * 126.59865 * 0.33912 * 4 3 2 6 6 O 1.42902 * 109.47102 * 284.99431 * 5 4 3 7 7 Si 1.86303 * 109.47288 * 164.99389 * 5 4 3 8 8 C 1.34174 * 106.80213 * 180.35247 * 4 3 2 9 9 N 1.36945 * 109.95266 * 0.02562 * 8 4 3 10 10 C 1.37152 * 110.11319 * 359.97438 * 9 8 4 11 11 N 1.32823 * 132.96301 * 179.97438 * 10 9 8 12 12 C 1.31307 * 121.88629 * 180.02562 * 11 10 9 13 13 C 1.39745 * 121.03200 * 179.72585 * 2 1 3 14 14 C 1.47670 * 120.45637 * 0.02562 * 13 2 1 15 15 O 1.21576 * 119.99566 * 353.70836 * 14 13 2 16 16 N 1.34773 * 120.00249 * 173.70817 * 14 13 2 17 17 C 1.46500 * 119.99813 * 179.97438 * 16 14 13 18 18 H 1.08995 * 112.91196 * 23.74271 * 17 16 14 19 19 C 1.53780 * 113.61369 * 155.00274 * 17 16 14 20 20 C 1.53782 * 87.08445 * 139.97998 * 19 17 16 21 21 H 1.08996 * 113.61597 * 89.19851 * 20 19 17 22 22 C 1.53004 * 113.61233 * 220.02003 * 20 19 17 23 23 F 1.39901 * 109.46586 * 184.99596 * 22 20 19 24 24 C 1.53784 * 87.07978 * 334.56557 * 20 19 17 25 25 H 1.09007 * 109.47170 * 263.97406 * 1 2 3 26 26 H 1.08997 * 109.47177 * 23.97886 * 1 2 3 27 27 H 1.09000 * 109.47230 * 143.98002 * 1 2 3 28 28 H 1.09001 * 109.47521 * 44.99575 * 5 4 3 29 29 H 0.96697 * 113.99876 * 300.00303 * 6 5 4 30 30 H 1.48507 * 109.99736 * 58.68253 * 7 5 4 31 31 H 1.48502 * 110.00316 * 179.97438 * 7 5 4 32 32 H 1.08011 * 125.02437 * 179.97438 * 8 4 3 33 33 H 0.97007 * 124.94149 * 180.02562 * 9 8 4 34 34 H 1.08007 * 119.30995 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00386 * 0.02562 * 16 14 13 36 36 H 1.09004 * 113.61397 * 25.43107 * 19 17 16 37 37 H 1.08999 * 113.61378 * 254.52759 * 19 17 16 38 38 H 1.09000 * 109.46798 * 304.99381 * 22 20 19 39 39 H 1.08997 * 109.47212 * 64.99849 * 22 20 19 40 40 H 1.09001 * 113.61670 * 139.98179 * 24 20 19 41 41 H 1.09000 * 113.61604 * 270.88597 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1935 0.0000 4 6 1.8516 2.6100 -0.0026 5 6 0.4527 3.1704 0.0009 6 8 -0.1238 3.0203 -1.2980 7 14 0.5086 4.9775 0.4505 8 6 2.9947 3.3125 -0.0090 9 7 4.0668 2.4604 -0.0112 10 6 3.6347 1.1588 -0.0057 11 7 4.2721 -0.0066 -0.0056 12 6 3.6267 -1.1501 0.0000 13 6 2.2274 -1.1974 0.0057 14 6 1.5225 -2.4950 0.0114 15 8 0.3127 -2.5290 0.1265 16 7 2.2203 -3.6415 -0.1111 17 6 1.5210 -4.9288 -0.1049 18 1 0.4768 -4.8459 -0.4064 19 6 2.2850 -6.0484 -0.8313 20 6 1.8286 -6.9859 0.2991 21 1 0.8693 -7.4664 0.1073 22 6 2.9076 -7.9723 0.7503 23 9 2.3688 -8.8527 1.6947 24 6 1.7265 -5.7354 1.1883 25 1 -0.3634 -0.1079 1.0220 26 1 -0.3633 0.9389 -0.4176 27 1 -0.3634 -0.8312 -0.6043 28 1 -0.1523 2.6330 0.7312 29 1 0.3635 3.4738 -1.9994 30 1 1.3564 5.7162 -0.5196 31 1 -0.8648 5.5422 0.4568 32 1 3.0598 4.3907 -0.0127 33 1 4.9965 2.7373 -0.0154 34 1 4.1870 -2.0734 -0.0006 35 1 3.1856 -3.6145 -0.2025 36 1 3.3634 -5.8929 -0.8610 37 1 1.8659 -6.3023 -1.8050 38 1 3.2661 -8.5373 -0.1101 39 1 3.7373 -7.4242 1.1965 40 1 0.8566 -5.7364 1.8451 41 1 2.6522 -5.4943 1.7108 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12890568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:41 Heat of formation + Delta-G solvation = -19.419372 kcal Electronic energy + Delta-G solvation = -26527.924092 eV Core-core repulsion = 22518.131496 eV Total energy + Delta-G solvation = -4009.792596 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.52160 -42.86454 -41.26838 -39.70111 -38.62669 -37.84620 -35.27430 -34.68161 -31.96284 -31.19869 -29.32027 -28.76422 -26.71683 -26.49779 -25.00321 -24.16935 -23.13114 -21.80397 -20.87457 -20.59191 -19.33901 -18.73734 -17.76447 -17.69772 -17.34986 -16.93840 -16.81330 -16.69479 -16.44896 -16.07318 -15.91960 -15.64576 -15.46418 -15.39712 -14.87708 -14.69770 -14.18254 -14.05380 -13.75246 -13.63266 -13.51458 -13.43283 -13.22574 -13.17800 -12.84415 -12.49824 -12.34509 -12.01900 -11.81097 -11.47777 -11.26823 -11.16442 -11.15851 -10.60123 -10.28256 -10.10464 -9.62393 -9.13940 -4.83848 -0.35742 -0.08564 1.35312 1.41548 1.62349 1.67935 1.77632 2.04980 2.08038 2.74738 3.29848 3.39113 3.43828 3.45807 3.53321 3.62023 3.64252 3.70038 3.76036 3.81054 4.13050 4.13531 4.24288 4.26324 4.28703 4.34403 4.50536 4.59400 4.61325 4.67965 4.72834 4.77001 4.80968 4.84676 4.96916 5.04305 5.06767 5.17104 5.24980 5.29368 5.40394 5.57527 5.72853 6.21322 6.48178 6.59261 6.82282 7.16742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.062 3.938 3 C -0.167 4.167 4 C -0.196 4.196 5 C -0.060 4.060 6 O -0.550 6.550 7 Si 0.781 3.219 8 C 0.091 3.909 9 N -0.560 5.560 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.181 3.819 13 C -0.242 4.242 14 C 0.569 3.431 15 O -0.568 6.568 16 N -0.702 5.702 17 C 0.118 3.882 18 H 0.096 0.904 19 C -0.120 4.120 20 C -0.141 4.141 21 H 0.097 0.903 22 C 0.066 3.934 23 F -0.241 7.241 24 C -0.147 4.147 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.385 0.615 30 H -0.258 1.258 31 H -0.309 1.309 32 H 0.221 0.779 33 H 0.438 0.562 34 H 0.196 0.804 35 H 0.415 0.585 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 3.532 -0.501 8.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 C -0.174 4.174 4 C -0.204 4.204 5 C -0.167 4.167 6 O -0.358 6.358 7 Si 0.683 3.317 8 C -0.036 4.036 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.013 3.987 13 C -0.249 4.249 14 C 0.358 3.642 15 O -0.449 6.449 16 N -0.353 5.353 17 C 0.013 3.987 18 H 0.114 0.886 19 C -0.158 4.158 20 C -0.161 4.161 21 H 0.115 0.885 22 C 0.011 3.989 23 F -0.223 7.223 24 C -0.186 4.186 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.234 0.766 30 H -0.183 1.183 31 H -0.237 1.237 32 H 0.237 0.763 33 H 0.280 0.720 34 H 0.213 0.787 35 H 0.253 0.747 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.893 4.104 -0.341 8.030 hybrid contribution -0.423 -0.469 -1.064 1.237 sum 6.470 3.635 -1.405 7.553 Atomic orbital electron populations 1.21086 0.89582 1.03965 1.03120 1.20059 0.96974 0.90255 0.87335 1.19753 0.93294 0.94382 1.09933 1.20705 0.96107 0.90253 1.13311 1.24747 0.90544 1.13853 0.87602 1.86585 1.55116 1.76680 1.17447 0.94068 0.79252 0.70055 0.88297 1.22330 0.83986 0.97216 1.00087 1.41604 1.10607 1.01723 1.62693 1.18769 0.89476 0.86864 0.99358 1.66522 1.40812 0.96462 1.19091 1.22979 0.89585 0.95358 0.90809 1.20527 0.95531 0.93328 1.15528 1.18074 0.86472 0.84177 0.75497 1.90744 1.15301 1.87594 1.51218 1.45744 1.11239 1.04656 1.73708 1.22491 0.97859 0.80842 0.97478 0.88572 1.23298 1.02297 0.92323 0.97894 1.22946 1.00354 0.94741 0.98034 0.88478 1.22252 0.95791 0.90016 0.90798 1.92738 1.88613 1.72172 1.68759 1.23595 1.03171 0.94905 0.96928 0.90542 0.89941 0.90317 0.87354 0.76551 1.18325 1.23706 0.76299 0.72024 0.78747 0.74676 0.86583 0.89516 0.88786 0.88818 0.92337 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 8.45 71.24 0.60 -0.49 16 2 C 0.06 0.49 5.98 -19.25 -0.12 0.38 16 3 C -0.17 -0.90 6.16 -20.19 -0.12 -1.03 16 4 C -0.20 0.04 5.57 -18.64 -0.10 -0.07 16 5 C -0.06 0.04 1.88 71.24 0.13 0.18 16 6 O -0.55 -1.40 11.64 -148.98 -1.73 -3.14 16 7 Si 0.78 -4.11 30.83 68.60 2.11 -2.00 16 8 C 0.09 -0.53 10.44 82.97 0.87 0.33 16 9 N -0.56 2.01 6.04 -192.25 -1.16 0.85 16 10 C 0.29 1.08 8.42 134.02 1.13 2.21 16 11 N -0.52 -2.14 10.37 -191.75 -1.99 -4.13 16 12 C 0.18 0.20 10.67 85.20 0.91 1.11 16 13 C -0.24 -1.28 5.89 -19.99 -0.12 -1.40 16 14 C 0.57 3.48 7.72 86.74 0.67 4.15 16 15 O -0.57 -7.73 13.10 -3.95 -0.05 -7.79 16 16 N -0.70 1.18 5.31 -443.07 -2.35 -1.17 16 17 C 0.12 -0.16 4.24 45.52 0.19 0.03 16 18 H 0.10 0.36 7.46 -2.39 -0.02 0.34 16 19 C -0.12 0.87 7.39 31.12 0.23 1.10 16 20 C -0.14 0.57 4.10 -10.27 -0.04 0.52 16 21 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16 22 C 0.07 -0.28 7.39 71.98 0.53 0.25 16 23 F -0.24 -1.15 17.36 44.97 0.78 -0.37 16 24 C -0.15 0.27 7.43 31.12 0.23 0.50 16 25 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.08 0.69 4.80 -2.39 -0.01 0.68 16 27 H 0.08 0.99 5.96 -2.39 -0.01 0.98 16 28 H 0.11 0.06 7.15 -2.39 -0.02 0.04 16 29 H 0.39 -1.49 8.70 -74.06 -0.64 -2.13 16 30 H -0.26 1.32 7.00 99.48 0.70 2.02 16 31 H -0.31 -1.25 7.11 99.48 0.71 -0.54 16 32 H 0.22 -3.04 6.28 -2.90 -0.02 -3.05 16 33 H 0.44 -4.00 8.96 -92.70 -0.83 -4.83 16 34 H 0.20 -1.48 6.43 -2.91 -0.02 -1.50 16 35 H 0.41 -3.53 6.80 -92.71 -0.63 -4.16 16 36 H 0.12 -1.38 8.08 -2.39 -0.02 -1.40 16 37 H 0.09 -0.63 8.14 -2.39 -0.02 -0.65 16 38 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.09 -0.73 7.84 -2.39 -0.02 -0.75 16 40 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.10 -0.44 7.90 -2.39 -0.02 -0.45 16 Total: 0.00 -25.17 337.54 -0.35 -25.52 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: -0.95 Total: -15.56 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 4.99 Total: 7.78 kcal Atomic # 7 Polarization: 1.05 SS G_CDS: -5.50 Total: -4.45 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -1.79 Total: -10.92 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.78 Total: -0.37 kcal Atomic # 14 Polarization: -4.11 SS G_CDS: 2.11 Total: -2.00 kcal Total: -25.17 -0.35 -25.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12890568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.105 kcal (2) G-P(sol) polarization free energy of solvation -25.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds