Wall clock time and date at job start Sun Mar 7 2021 04:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86302 * 109.47181 * 2 1 4 4 C 1.50699 * 109.47399 * 119.99942 * 2 1 3 5 5 C 1.38337 * 119.87199 * 65.00211 * 4 2 1 6 6 C 1.37993 * 120.12917 * 180.02562 * 5 4 2 7 7 C 1.39404 * 119.87421 * 359.97438 * 6 5 4 8 8 C 1.48272 * 120.12884 * 180.02562 * 7 6 5 9 9 C 1.39508 * 119.97397 * 180.02562 * 8 7 6 10 10 C 1.37668 * 120.02477 * 180.02562 * 9 8 7 11 11 C 1.39714 * 119.97352 * 0.02562 * 10 9 8 12 12 C 1.47718 * 120.02136 * 179.97438 * 11 10 9 13 13 O 1.21571 * 120.00334 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99660 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99895 * 180.02562 * 14 12 11 16 16 H 1.09003 * 112.85046 * 336.19048 * 15 14 12 17 17 C 1.53775 * 113.61656 * 107.50207 * 15 14 12 18 18 C 1.53779 * 87.08438 * 139.98199 * 17 15 14 19 19 H 1.09002 * 113.61731 * 89.11293 * 18 17 15 20 20 C 1.53000 * 113.69071 * 220.00724 * 18 17 15 21 21 F 1.39898 * 109.47327 * 164.06129 * 20 18 17 22 22 C 1.53777 * 113.61534 * 204.99945 * 15 14 12 23 23 C 1.39704 * 119.95155 * 0.25807 * 11 10 9 24 24 C 1.37667 * 119.97357 * 359.46147 * 23 11 10 25 25 C 1.39404 * 119.74146 * 0.28254 * 7 6 5 26 26 C 1.38005 * 119.87210 * 359.46933 * 25 7 6 27 27 H 0.96697 * 114.00552 * 299.99666 * 1 2 3 28 28 H 1.08997 * 109.47513 * 239.99990 * 2 1 3 29 29 H 1.48499 * 110.00390 * 178.68079 * 3 2 1 30 30 H 1.48498 * 110.00103 * 299.99988 * 3 2 1 31 31 H 1.08001 * 119.93294 * 359.97438 * 5 4 2 32 32 H 1.07998 * 120.06812 * 179.97438 * 6 5 4 33 33 H 1.07994 * 119.98981 * 359.97438 * 9 8 7 34 34 H 1.07993 * 120.01456 * 180.02562 * 10 9 8 35 35 H 0.97002 * 120.00021 * 359.97438 * 14 12 11 36 36 H 1.08993 * 113.61636 * 25.42563 * 17 15 14 37 37 H 1.09008 * 113.61006 * 254.52805 * 17 15 14 38 38 H 1.08997 * 109.47255 * 284.06405 * 20 18 17 39 39 H 1.09000 * 109.46911 * 44.06126 * 20 18 17 40 40 H 1.08997 * 113.61941 * 105.46412 * 22 15 14 41 41 H 1.09009 * 113.68972 * 334.57492 * 22 15 14 42 42 H 1.08006 * 120.01497 * 179.72377 * 23 11 10 43 43 H 1.08009 * 119.98779 * 180.27735 * 24 23 11 44 44 H 1.08004 * 120.06439 * 179.72258 * 25 7 6 45 45 H 1.07995 * 119.93201 * 180.23356 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6831 -2.0612 1.3958 6 6 2.1402 -2.7169 2.5207 7 6 2.8539 -2.0155 3.4913 8 6 3.3481 -2.7145 4.7019 9 6 4.0615 -2.0093 5.6714 10 6 4.5214 -2.6574 6.7956 11 6 4.2739 -4.0219 6.9650 12 6 4.7673 -4.7185 8.1706 13 8 5.3886 -4.1043 9.0160 14 7 4.5287 -6.0350 8.3332 15 6 5.0176 -6.7257 9.5291 16 1 5.8704 -6.2255 9.9879 17 6 3.9060 -7.0920 10.5266 18 6 4.6426 -8.4254 10.7371 19 1 5.3924 -8.3901 11.5275 20 6 3.7087 -9.6313 10.8576 21 9 4.4427 -10.8092 10.6814 22 6 5.2252 -8.2359 9.3266 23 6 3.5645 -4.7284 5.9906 24 6 3.1006 -4.0770 4.8700 25 6 3.0963 -0.6532 3.3218 26 6 2.6387 -0.0091 2.1903 27 1 -0.3934 0.4416 0.7650 28 1 1.7923 -0.5138 -0.8899 29 1 3.5345 1.7704 0.0321 30 1 1.5615 2.4679 -1.2085 31 1 1.1298 -2.6035 0.6433 32 1 1.9455 -3.7714 2.6489 33 1 4.2538 -0.9548 5.5397 34 1 5.0733 -2.1112 7.5462 35 1 4.0326 -6.5249 7.6588 36 1 2.9248 -7.2033 10.0654 37 1 3.8887 -6.4581 11.4132 38 1 3.2462 -9.6356 11.8446 39 1 2.9337 -9.5684 10.0936 40 1 6.2727 -8.5256 9.2442 41 1 4.6051 -8.6613 8.5373 42 1 3.3764 -5.7842 6.1184 43 1 2.5483 -4.6220 4.1186 44 1 3.6448 -0.1037 4.0727 45 1 2.8293 1.0454 2.0563 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_13158362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:44 Heat of formation + Delta-G solvation = -38.047843 kcal Electronic energy + Delta-G solvation = -27506.300583 eV Core-core repulsion = 23370.099736 eV Total energy + Delta-G solvation = -4136.200846 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.142 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -48.53252 -41.58217 -40.85357 -39.84168 -38.91636 -37.50231 -34.98779 -33.88551 -32.56860 -31.58538 -30.93056 -29.30824 -27.01757 -26.72564 -24.86464 -24.65735 -23.36586 -22.58814 -22.11477 -21.38618 -20.77041 -19.17682 -18.40384 -17.87281 -17.61367 -17.03299 -16.84786 -16.72487 -16.35689 -16.29812 -16.09934 -15.94748 -15.69216 -15.40749 -15.32384 -15.03341 -14.91467 -14.76164 -14.30153 -14.23977 -14.04748 -13.59249 -13.50974 -13.45172 -13.15513 -13.07755 -12.74017 -12.58085 -12.53730 -12.11360 -11.94545 -11.82464 -11.60316 -11.51643 -11.36478 -11.04000 -10.77072 -10.41601 -10.13858 -10.06501 -9.95657 -9.07621 -5.01341 -0.69519 0.34812 0.40533 0.49728 1.30415 1.62283 1.76619 1.95705 2.06047 2.60098 3.00804 3.34123 3.38956 3.41438 3.53938 3.62247 3.63336 3.68757 3.75791 3.80806 3.87889 4.01368 4.04788 4.10628 4.18187 4.25985 4.27226 4.29259 4.37234 4.47620 4.62750 4.64559 4.67545 4.68590 4.78111 4.82943 4.89207 4.91683 4.97623 5.03187 5.08674 5.13133 5.20531 5.21626 5.26608 5.41506 5.49920 5.51196 5.65344 5.79633 5.93255 6.43969 6.75833 7.10601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.073 4.073 3 Si 0.772 3.228 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.122 4.122 10 C -0.070 4.070 11 C -0.153 4.153 12 C 0.556 3.444 13 O -0.582 6.582 14 N -0.701 5.701 15 C 0.115 3.885 16 H 0.096 0.904 17 C -0.134 4.134 18 C -0.141 4.141 19 H 0.100 0.900 20 C 0.067 3.933 21 F -0.237 7.237 22 C -0.131 4.131 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.107 4.107 26 C -0.118 4.118 27 H 0.395 0.605 28 H 0.106 0.894 29 H -0.287 1.287 30 H -0.301 1.301 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.416 0.584 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.147 0.853 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -0.691 -0.438 4.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.184 4.184 3 Si 0.679 3.321 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.125 4.125 7 C -0.060 4.060 8 C -0.022 4.022 9 C -0.140 4.140 10 C -0.089 4.089 11 C -0.156 4.156 12 C 0.345 3.655 13 O -0.463 6.463 14 N -0.353 5.353 15 C 0.010 3.990 16 H 0.114 0.886 17 C -0.173 4.173 18 C -0.161 4.161 19 H 0.118 0.882 20 C 0.013 3.987 21 F -0.218 7.218 22 C -0.170 4.170 23 C -0.092 4.092 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.136 4.136 27 H 0.245 0.755 28 H 0.124 0.876 29 H -0.214 1.214 30 H -0.230 1.230 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.254 0.746 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.175 0.825 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.252 -0.038 -0.801 3.350 hybrid contribution 0.236 -0.737 -0.392 0.867 sum -3.016 -0.775 -1.193 3.335 Atomic orbital electron populations 1.86472 1.17153 1.82161 1.50524 1.25151 0.85329 1.10611 0.97262 0.93773 0.77863 0.75590 0.84911 1.20531 0.99365 0.95199 0.96886 1.21105 0.99051 0.94016 0.97932 1.21514 0.96906 1.01000 0.93131 1.18940 0.99219 0.93906 0.93974 1.19149 0.96028 0.93930 0.93135 1.21394 0.98212 1.01308 0.93071 1.21269 0.96895 0.93424 0.97357 1.20005 1.04408 0.95227 0.95982 1.18617 0.78505 0.82563 0.85781 1.90769 1.42748 1.67171 1.45652 1.45804 1.56961 1.08493 1.24013 1.22532 0.97997 0.92314 0.86172 0.88640 1.23405 0.99012 0.95226 0.99615 1.22936 0.99510 0.94786 0.98837 0.88190 1.22158 0.92988 0.78919 1.04652 1.92742 1.80486 1.51350 1.97265 1.23366 1.02865 0.93348 0.97375 1.21464 0.94706 1.00826 0.92229 1.21472 1.00372 0.93542 0.98472 1.21498 0.99232 0.93691 0.98016 1.21139 0.98370 1.00207 0.93850 0.75465 0.87617 1.21426 1.22973 0.85122 0.83651 0.83334 0.85439 0.74574 0.87618 0.90988 0.89402 0.88725 0.90690 0.87541 0.82471 0.82703 0.83509 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.40 12.83 -148.98 -1.91 -1.51 16 2 C -0.07 0.11 2.80 71.24 0.20 0.31 16 3 Si 0.77 -2.13 29.79 68.60 2.04 -0.08 16 4 C -0.12 0.17 5.36 -19.82 -0.11 0.06 16 5 C -0.10 0.11 9.67 22.24 0.21 0.32 16 6 C -0.11 0.24 9.43 22.49 0.21 0.45 16 7 C -0.06 0.08 5.88 -20.05 -0.12 -0.04 16 8 C -0.02 0.02 5.88 -20.00 -0.12 -0.09 16 9 C -0.12 0.04 9.41 22.44 0.21 0.25 16 10 C -0.07 -0.21 9.58 22.49 0.22 0.00 16 11 C -0.15 -0.30 5.88 -20.06 -0.12 -0.42 16 12 C 0.56 2.94 7.77 86.75 0.67 3.61 16 13 O -0.58 -8.24 15.93 -3.94 -0.06 -8.30 16 14 N -0.70 1.30 5.30 -443.03 -2.35 -1.05 16 15 C 0.11 -0.15 4.24 45.51 0.19 0.05 16 16 H 0.10 0.37 7.46 -2.39 -0.02 0.36 16 17 C -0.13 0.58 7.44 31.12 0.23 0.82 16 18 C -0.14 0.63 4.10 -10.27 -0.04 0.58 16 19 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 20 C 0.07 -0.32 7.31 71.98 0.53 0.21 16 21 F -0.24 -0.71 17.32 44.97 0.78 0.07 16 22 C -0.13 0.60 7.36 31.12 0.23 0.83 16 23 C -0.07 0.29 9.52 22.49 0.21 0.51 16 24 C -0.12 0.46 9.41 22.44 0.21 0.68 16 25 C -0.11 0.27 9.43 22.50 0.21 0.48 16 26 C -0.12 0.36 8.65 22.24 0.19 0.55 16 27 H 0.40 -3.44 8.70 -74.06 -0.64 -4.09 16 28 H 0.11 -0.02 7.96 -2.39 -0.02 -0.04 16 29 H -0.29 -0.63 7.11 99.48 0.71 0.07 16 30 H -0.30 -1.55 7.11 99.48 0.71 -0.85 16 31 H 0.13 -0.26 8.06 -2.91 -0.02 -0.28 16 32 H 0.15 -0.95 6.19 -2.91 -0.02 -0.97 16 33 H 0.15 -0.65 6.19 -2.91 -0.02 -0.66 16 34 H 0.13 0.60 7.64 -2.91 -0.02 0.57 16 35 H 0.42 -3.53 6.75 -92.71 -0.63 -4.15 16 36 H 0.11 -0.79 8.06 -2.39 -0.02 -0.81 16 37 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 38 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.09 -0.82 8.09 -2.39 -0.02 -0.84 16 40 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.11 -0.84 8.08 -2.38 -0.02 -0.85 16 42 H 0.16 -1.72 6.39 -2.91 -0.02 -1.74 16 43 H 0.16 -1.35 6.19 -2.91 -0.02 -1.37 16 44 H 0.15 -0.93 6.19 -2.91 -0.02 -0.95 16 45 H 0.15 -1.04 4.89 -2.91 -0.01 -1.05 16 Total: 0.00 -22.30 373.89 1.55 -20.75 By element: Atomic # 1 Polarization: -18.84 SS G_CDS: -0.18 Total: -19.02 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 3.23 Total: 9.15 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: -2.35 Total: -1.05 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.97 Total: -9.81 kcal Atomic # 9 Polarization: -0.71 SS G_CDS: 0.78 Total: 0.07 kcal Atomic # 14 Polarization: -2.13 SS G_CDS: 2.04 Total: -0.08 kcal Total: -22.30 1.55 -20.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13158362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.298 kcal (2) G-P(sol) polarization free energy of solvation -22.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds