Wall clock time and date at job start Sun Mar 7 2021 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.46700 * 2 1 4 4 C 1.50702 * 109.47230 * 119.99755 * 2 1 3 5 5 C 1.34856 * 125.89847 * 217.29252 * 4 2 1 6 6 C 1.40940 * 107.46552 * 179.97438 * 5 4 2 7 7 C 1.34848 * 107.46825 * 0.22655 * 6 5 4 8 8 N 1.36562 * 125.89990 * 37.25289 * 4 2 1 9 9 C 1.40205 * 125.66893 * 0.03114 * 8 4 2 10 10 C 1.38821 * 120.06600 * 235.27733 * 9 8 4 11 11 C 1.38128 * 119.93494 * 179.74997 * 10 9 8 12 12 C 1.38273 * 120.06170 * 0.52643 * 11 10 9 13 13 C 1.50699 * 119.93321 * 179.72485 * 12 11 10 14 14 C 1.50700 * 109.46974 * 270.02178 * 13 12 11 15 15 O 1.21278 * 120.00402 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99869 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00268 * 180.02562 * 16 14 13 18 18 H 1.08998 * 112.84447 * 336.19402 * 17 16 14 19 19 C 1.53777 * 113.61540 * 107.50007 * 17 16 14 20 20 C 1.53777 * 87.07925 * 139.98308 * 19 17 16 21 21 H 1.08998 * 113.69226 * 89.12836 * 20 19 17 22 22 C 1.53002 * 113.61449 * 220.02013 * 20 19 17 23 23 F 1.39904 * 109.47396 * 162.49927 * 22 20 19 24 24 C 1.53777 * 87.08509 * 334.56855 * 20 19 17 25 25 C 1.38282 * 120.13392 * 359.74984 * 12 11 10 26 26 C 1.38130 * 120.06169 * 359.97438 * 25 12 11 27 27 H 0.96700 * 114.00363 * 305.49823 * 1 2 3 28 28 H 1.08993 * 109.47415 * 240.00060 * 2 1 3 29 29 H 1.48500 * 109.99908 * 299.99896 * 3 2 1 30 30 H 1.48491 * 110.00158 * 61.32191 * 3 2 1 31 31 H 1.08004 * 126.26384 * 359.96520 * 5 4 2 32 32 H 1.07998 * 126.26743 * 179.97438 * 6 5 4 33 33 H 1.08007 * 125.90002 * 179.77693 * 7 6 5 34 34 H 1.08003 * 120.03615 * 0.02784 * 10 9 8 35 35 H 1.07992 * 119.96944 * 180.30138 * 11 10 9 36 36 H 1.08997 * 109.47002 * 30.02786 * 13 12 11 37 37 H 1.09007 * 109.46960 * 150.02556 * 13 12 11 38 38 H 0.97009 * 120.00143 * 0.02562 * 16 14 13 39 39 H 1.09000 * 113.61478 * 254.53338 * 19 17 16 40 40 H 1.08998 * 113.61199 * 25.43713 * 19 17 16 41 41 H 1.09003 * 109.47211 * 282.49411 * 22 20 19 42 42 H 1.08994 * 109.47373 * 42.49797 * 22 20 19 43 43 H 1.09005 * 113.61488 * 270.88607 * 24 20 19 44 44 H 1.08993 * 113.61883 * 139.98109 * 24 20 19 45 45 H 1.07995 * 119.96964 * 179.97438 * 25 12 11 46 46 H 1.07994 * 120.03033 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 3.0143 -0.3650 1.9561 6 6 3.1254 -1.2879 3.0156 7 6 2.1093 -2.1662 2.8956 8 7 1.3681 -1.8145 1.8037 9 6 0.2225 -2.4797 1.3445 10 6 -0.8558 -2.6766 2.1964 11 6 -1.9851 -3.3277 1.7396 12 6 -2.0379 -3.7928 0.4385 13 6 -3.2690 -4.5082 -0.0549 14 6 -3.1278 -5.9865 0.2019 15 8 -2.1263 -6.4166 0.7337 16 7 -4.1149 -6.8304 -0.1585 17 6 -3.9778 -8.2674 0.0917 18 1 -2.9386 -8.5853 0.1745 19 6 -4.8743 -8.7828 1.2298 20 6 -5.1296 -10.0252 0.3603 21 1 -4.4064 -10.8255 0.5169 22 6 -6.5779 -10.5164 0.4036 23 9 -6.8152 -11.3651 -0.6831 24 6 -4.8153 -9.1406 -0.8576 25 6 -0.9631 -3.6032 -0.4106 26 6 0.1666 -2.9477 0.0389 27 1 -0.3934 0.5130 0.7192 28 1 1.7923 -0.5138 -0.8899 29 1 1.5613 2.4679 -1.2085 30 1 1.5878 2.4586 1.2242 31 1 3.6754 0.4664 1.7610 32 1 3.8874 -1.2933 3.7809 33 1 1.9138 -3.0019 3.5512 34 1 -0.8135 -2.3171 3.2140 35 1 -2.8261 -3.4769 2.4004 36 1 -4.1449 -4.1299 0.4722 37 1 -3.3858 -4.3349 -1.1247 38 1 -4.9161 -6.4863 -0.5835 39 1 -4.3312 -8.9980 2.1501 40 1 -5.7638 -8.1748 1.3944 41 1 -6.7498 -11.0596 1.3329 42 1 -7.2530 -9.6623 0.3517 43 1 -5.6888 -8.6303 -1.2637 44 1 -4.2246 -9.6445 -1.6226 45 1 -1.0071 -3.9679 -1.4262 46 1 1.0055 -2.7996 -0.6249 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_13287746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:07 Heat of formation + Delta-G solvation = -7.891958 kcal Electronic energy + Delta-G solvation = -29107.589312 eV Core-core repulsion = 24879.958733 eV Total energy + Delta-G solvation = -4227.630579 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.54915 -42.68964 -41.30648 -40.11631 -39.09921 -37.84928 -34.88679 -34.65539 -32.18398 -31.84937 -31.06735 -29.50951 -27.72336 -26.72416 -26.06720 -24.14047 -23.99648 -22.85878 -21.57830 -21.42419 -20.73333 -20.57886 -19.31483 -18.07632 -17.83375 -17.52648 -17.09018 -17.03834 -16.72583 -16.55946 -16.31685 -15.95866 -15.82484 -15.67366 -15.50281 -15.30046 -14.77820 -14.63705 -14.53686 -14.36109 -14.18827 -13.94186 -13.52869 -13.47121 -13.34702 -13.21928 -13.09734 -12.90748 -12.73335 -12.50780 -12.34404 -12.13349 -11.88615 -11.81543 -11.52671 -11.34843 -10.99578 -10.91818 -10.24985 -10.06772 -10.02726 -9.24155 -9.08729 -4.90302 -0.01607 0.31482 1.05723 1.36416 1.59376 1.65884 1.82587 1.98511 2.09570 2.15913 2.69733 3.26261 3.34770 3.40656 3.59161 3.64055 3.66839 3.72079 3.76675 3.84884 3.95088 4.10802 4.12620 4.17876 4.21372 4.27173 4.29079 4.46830 4.50232 4.52426 4.60527 4.62933 4.63950 4.67902 4.77531 4.81165 4.84455 4.93075 4.98567 5.03412 5.17225 5.18540 5.24726 5.25576 5.34960 5.46616 5.55335 5.76535 5.93057 6.18213 6.37341 6.48434 6.54400 7.24990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.062 4.062 3 Si 0.803 3.197 4 C -0.025 4.025 5 C -0.194 4.194 6 C -0.199 4.199 7 C -0.024 4.024 8 N -0.399 5.399 9 C 0.116 3.884 10 C -0.127 4.127 11 C -0.096 4.096 12 C -0.067 4.067 13 C -0.098 4.098 14 C 0.514 3.486 15 O -0.581 6.581 16 N -0.708 5.708 17 C 0.117 3.883 18 H 0.090 0.910 19 C -0.133 4.133 20 C -0.144 4.144 21 H 0.097 0.903 22 C 0.067 3.933 23 F -0.237 7.237 24 C -0.131 4.131 25 C -0.099 4.099 26 C -0.107 4.107 27 H 0.379 0.621 28 H 0.120 0.880 29 H -0.292 1.292 30 H -0.289 1.289 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.419 0.581 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 1.633 -0.486 4.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.345 6.345 2 C -0.170 4.170 3 Si 0.705 3.295 4 C -0.134 4.134 5 C -0.218 4.218 6 C -0.223 4.223 7 C -0.152 4.152 8 N -0.072 5.072 9 C 0.027 3.973 10 C -0.146 4.146 11 C -0.115 4.115 12 C -0.068 4.068 13 C -0.137 4.137 14 C 0.302 3.698 15 O -0.460 6.460 16 N -0.360 5.360 17 C 0.012 3.988 18 H 0.108 0.892 19 C -0.172 4.172 20 C -0.163 4.163 21 H 0.115 0.885 22 C 0.013 3.987 23 F -0.219 7.219 24 C -0.169 4.169 25 C -0.117 4.117 26 C -0.126 4.126 27 H 0.227 0.773 28 H 0.137 0.863 29 H -0.220 1.220 30 H -0.216 1.216 31 H 0.188 0.812 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.257 0.743 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.090 0.910 45 H 0.157 0.843 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.665 1.606 -0.768 4.074 hybrid contribution -1.060 -0.423 0.473 1.235 sum -4.725 1.182 -0.294 4.880 Atomic orbital electron populations 1.86588 1.18166 1.74781 1.54996 1.25044 0.83649 1.12221 0.96116 0.93343 0.90191 0.69574 0.76378 1.21319 0.98941 0.92476 1.00658 1.21050 0.99429 1.03775 0.97571 1.21225 1.01141 0.97695 1.02193 1.22318 0.95842 1.03762 0.93281 1.41573 1.20556 1.22136 1.22958 1.17763 0.86707 0.98422 0.94437 1.21140 0.92431 1.01037 0.99960 1.21086 0.97971 0.96972 0.95447 1.19583 0.95710 0.97575 0.93925 1.20767 0.97681 0.89278 1.05986 1.21027 0.82335 0.89464 0.77024 1.90745 1.31590 1.79505 1.44209 1.45900 1.21319 1.06626 1.62187 1.22402 0.99593 0.79811 0.96993 0.89182 1.23393 1.00681 0.95681 0.97444 1.22947 0.97411 0.97616 0.98328 0.88470 1.22164 0.96243 0.93485 0.86834 1.92742 1.95747 1.74280 1.59102 1.23345 1.00481 0.96593 0.96523 1.21068 0.92259 0.97778 1.00599 1.20983 0.99143 0.97985 0.94506 0.77319 0.86255 1.21984 1.21593 0.81231 0.82574 0.81261 0.85180 0.83684 0.84726 0.85140 0.74343 0.91321 0.87522 0.89518 0.88692 0.87559 0.90991 0.84312 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -2.31 10.88 -148.98 -1.62 -3.93 16 2 C -0.06 -0.13 2.49 71.24 0.18 0.05 16 3 Si 0.80 -0.76 30.82 68.60 2.11 1.35 16 4 C -0.02 -0.12 6.12 41.05 0.25 0.13 16 5 C -0.19 -0.65 9.40 22.15 0.21 -0.45 16 6 C -0.20 -0.90 10.86 22.15 0.24 -0.66 16 7 C -0.02 -0.15 11.20 83.18 0.93 0.78 16 8 N -0.40 -2.86 2.84 -333.41 -0.95 -3.81 16 9 C 0.12 0.82 4.69 38.08 0.18 1.00 16 10 C -0.13 -0.62 9.76 22.38 0.22 -0.40 16 11 C -0.10 -0.22 9.69 22.25 0.22 -0.01 16 12 C -0.07 -0.11 4.38 -19.85 -0.09 -0.20 16 13 C -0.10 0.52 5.83 29.10 0.17 0.69 16 14 C 0.51 0.32 7.82 87.66 0.69 1.00 16 15 O -0.58 -6.60 15.63 -3.02 -0.05 -6.65 16 16 N -0.71 3.52 5.35 -440.04 -2.36 1.16 16 17 C 0.12 -0.29 4.24 45.52 0.19 -0.09 16 18 H 0.09 0.32 7.46 -2.39 -0.02 0.30 16 19 C -0.13 0.67 7.43 31.12 0.23 0.90 16 20 C -0.14 0.65 4.11 -10.27 -0.04 0.61 16 21 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 22 C 0.07 -0.32 7.33 71.98 0.53 0.21 16 23 F -0.24 -0.73 17.30 44.97 0.78 0.05 16 24 C -0.13 0.65 7.34 31.12 0.23 0.88 16 25 C -0.10 -0.38 9.69 22.25 0.22 -0.16 16 26 C -0.11 -0.71 8.48 22.38 0.19 -0.52 16 27 H 0.38 0.25 8.60 -74.06 -0.64 -0.39 16 28 H 0.12 0.09 7.96 -2.39 -0.02 0.07 16 29 H -0.29 -1.48 7.11 99.48 0.71 -0.77 16 30 H -0.29 -1.28 7.11 99.48 0.71 -0.57 16 31 H 0.17 -0.43 6.62 -2.91 -0.02 -0.45 16 32 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 33 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.15 -0.32 8.06 -2.91 -0.02 -0.34 16 36 H 0.13 -1.47 8.08 -2.39 -0.02 -1.49 16 37 H 0.13 -1.31 8.08 -2.38 -0.02 -1.33 16 38 H 0.42 -4.95 8.73 -92.70 -0.81 -5.76 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.11 -0.89 8.03 -2.39 -0.02 -0.91 16 41 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.09 -0.83 8.05 -2.39 -0.02 -0.85 16 43 H 0.11 -0.87 8.08 -2.38 -0.02 -0.89 16 44 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.14 0.04 8.06 -2.91 -0.02 0.02 16 46 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 Total: 0.00 -23.25 388.52 2.25 -21.00 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: -0.40 Total: -12.93 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 4.73 Total: 3.76 kcal Atomic # 7 Polarization: 0.65 SS G_CDS: -3.30 Total: -2.65 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -1.67 Total: -10.58 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.78 Total: 0.05 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: 2.11 Total: 1.35 kcal Total: -23.25 2.25 -21.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13287746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.106 kcal (2) G-P(sol) polarization free energy of solvation -23.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds