Wall clock time and date at job start Sun Mar 7 2021 04:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37875 * 126.45646 * 2 1 4 4 C 1.46678 * 126.23356 * 359.71632 * 3 2 1 5 5 O 1.21703 * 119.99776 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99943 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99808 * 180.02562 * 6 4 3 8 8 H 1.08996 * 112.85318 * 25.32723 * 7 6 4 9 9 C 1.53786 * 113.61622 * 156.52996 * 7 6 4 10 10 C 1.53777 * 87.08231 * 139.97686 * 9 7 6 11 11 H 1.09007 * 113.61850 * 89.11602 * 10 9 7 12 12 C 1.52996 * 113.61757 * 219.93397 * 10 9 7 13 13 F 1.39899 * 109.47725 * 185.00198 * 12 10 9 14 14 C 1.53790 * 113.61130 * 254.13360 * 7 6 4 15 15 N 1.37651 * 107.53443 * 179.74001 * 3 2 1 16 16 C 1.35535 * 108.64319 * 359.97438 * 15 3 2 17 17 C 1.50698 * 125.56465 * 180.02562 * 16 15 3 18 18 O 1.42894 * 109.47013 * 300.00291 * 17 16 15 19 19 Si 1.86299 * 109.47329 * 180.02562 * 17 16 15 20 20 C 1.35456 * 108.87368 * 0.02562 * 16 15 3 21 21 H 1.08994 * 109.47221 * 89.99959 * 1 2 3 22 22 H 1.09000 * 109.46910 * 210.00294 * 1 2 3 23 23 H 1.09004 * 109.47278 * 329.99655 * 1 2 3 24 24 H 0.96999 * 120.00156 * 359.97438 * 6 4 3 25 25 H 1.08997 * 113.61188 * 254.52455 * 9 7 6 26 26 H 1.08998 * 113.61280 * 25.42747 * 9 7 6 27 27 H 1.09005 * 109.47140 * 305.00602 * 12 10 9 28 28 H 1.09006 * 109.47109 * 64.99793 * 12 10 9 29 29 H 1.08999 * 113.61667 * 334.56927 * 14 7 6 30 30 H 1.09007 * 113.61364 * 105.47454 * 14 7 6 31 31 H 0.96994 * 125.67827 * 180.02562 * 15 3 2 32 32 H 1.08998 * 109.46861 * 60.00011 * 17 16 15 33 33 H 0.96699 * 114.00205 * 299.99850 * 18 17 16 34 34 H 1.48496 * 110.00061 * 58.68073 * 19 17 16 35 35 H 1.48498 * 110.00053 * 179.97438 * 19 17 16 36 36 H 1.07996 * 126.06805 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8898 2.5093 -0.0059 5 8 0.7025 2.7766 -0.0109 6 7 2.8036 3.4999 -0.0057 7 6 2.3677 4.8985 -0.0109 8 1 1.3736 5.0337 0.4152 9 6 3.4165 5.8728 0.5509 10 6 3.0090 6.8374 -0.5752 11 1 2.1898 7.5037 -0.3044 12 6 4.1905 7.5754 -1.2077 13 9 3.7153 8.5075 -2.1364 14 6 2.5566 5.5975 -1.3677 15 7 3.6284 0.6626 0.0060 16 6 3.6218 -0.6928 0.0102 17 6 4.8433 -1.5752 0.0177 18 8 5.6285 -1.3116 -1.1467 19 14 4.3183 -3.3627 0.0205 20 6 2.3379 -1.1247 0.0064 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 3.7499 3.2868 -0.0013 25 1 3.1794 6.2417 1.5488 26 1 4.4405 5.5092 0.4651 27 1 4.7545 8.0917 -0.4307 28 1 4.8390 6.8586 -1.7117 29 1 3.3450 5.1584 -1.9791 30 1 1.6263 5.7444 -1.9165 31 1 4.4190 1.2244 0.0077 32 1 5.4352 -1.3686 0.9094 33 1 5.1643 -1.4742 -1.9792 34 1 3.4842 -3.6488 -1.1743 35 1 5.5140 -4.2433 0.0273 36 1 2.0137 -2.1548 0.0088 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_13940406.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:32 Heat of formation + Delta-G solvation = -57.027555 kcal Electronic energy + Delta-G solvation = -20381.199653 eV Core-core repulsion = 16975.418195 eV Total energy + Delta-G solvation = -3405.781458 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.57639 -42.62383 -40.92431 -39.25408 -37.84889 -35.02361 -33.46158 -31.72268 -29.47611 -28.19586 -26.93349 -26.76362 -23.98796 -22.24855 -21.54238 -21.22739 -20.25025 -19.48243 -18.15419 -17.68075 -16.99447 -16.84583 -16.68760 -16.49765 -16.09425 -15.73764 -15.61017 -15.39613 -14.93311 -14.69084 -14.29967 -13.88612 -13.64251 -13.61859 -13.56858 -13.51865 -13.02094 -12.91334 -12.50602 -12.27124 -12.09500 -11.87001 -11.55223 -11.33062 -11.11762 -10.82495 -10.23805 -9.83767 -9.21286 -4.83688 0.27792 1.21872 1.52567 1.69683 1.88993 2.00953 2.21323 2.22141 3.30659 3.33509 3.37184 3.55480 3.58038 3.69089 3.80217 4.07132 4.13366 4.19072 4.21733 4.26320 4.49607 4.54662 4.63133 4.70628 4.72486 4.76813 4.80830 4.88565 4.92750 4.99350 5.14473 5.18415 5.34089 5.45559 5.61950 5.83910 6.29219 6.38473 6.46525 7.04658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.086 4.086 3 C -0.071 4.071 4 C 0.587 3.413 5 O -0.564 6.564 6 N -0.708 5.708 7 C 0.118 3.882 8 H 0.099 0.901 9 C -0.119 4.119 10 C -0.140 4.140 11 H 0.100 0.900 12 C 0.066 3.934 13 F -0.241 7.241 14 C -0.149 4.149 15 N -0.512 5.512 16 C 0.037 3.963 17 C -0.061 4.061 18 O -0.548 6.548 19 Si 0.792 3.208 20 C -0.208 4.208 21 H 0.063 0.937 22 H 0.082 0.918 23 H 0.061 0.939 24 H 0.409 0.591 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.428 0.572 32 H 0.137 0.863 33 H 0.389 0.611 34 H -0.284 1.284 35 H -0.297 1.297 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -1.908 3.330 6.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.184 4.184 4 C 0.376 3.624 5 O -0.443 6.443 6 N -0.358 5.358 7 C 0.014 3.986 8 H 0.117 0.883 9 C -0.157 4.157 10 C -0.159 4.159 11 H 0.118 0.882 12 C 0.012 3.988 13 F -0.222 7.222 14 C -0.187 4.187 15 N -0.110 5.110 16 C -0.082 4.082 17 C -0.170 4.170 18 O -0.356 6.356 19 Si 0.696 3.304 20 C -0.232 4.232 21 H 0.082 0.918 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.246 0.754 25 H 0.108 0.892 26 H 0.131 0.869 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.268 0.732 32 H 0.155 0.845 33 H 0.239 0.761 34 H -0.210 1.210 35 H -0.225 1.225 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.441 -2.121 3.334 5.945 hybrid contribution 0.677 0.880 -1.345 1.744 sum 5.118 -1.241 1.990 5.630 Atomic orbital electron populations 1.20339 0.89265 1.03051 1.02139 1.20178 0.96293 0.91370 1.01664 1.20143 0.84542 0.93088 1.20628 1.17274 0.85702 0.83829 0.75627 1.90822 1.17700 1.83806 1.51947 1.45751 1.09532 1.05653 1.74891 1.22521 0.99956 0.78674 0.97479 0.88325 1.23275 0.99803 0.93819 0.98777 1.22977 0.99217 0.96000 0.97742 0.88206 1.22236 0.95897 0.90115 0.90576 1.92741 1.90664 1.69191 1.69600 1.23617 1.02265 0.95859 0.96989 1.41787 1.06739 1.06720 1.55754 1.21218 0.96961 0.83349 1.06648 1.25061 0.91351 1.08930 0.91679 1.86573 1.42659 1.89624 1.16738 0.93306 0.79001 0.70330 0.87782 1.20833 0.90920 0.99531 1.11905 0.91798 0.89894 0.92046 0.75412 0.89164 0.86895 0.88632 0.89104 0.88595 0.92230 0.73225 0.84547 0.76116 1.21041 1.22524 0.81630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 9.82 71.24 0.70 0.27 16 2 C -0.09 -0.38 6.21 -19.56 -0.12 -0.50 16 3 C -0.07 -0.23 7.06 40.35 0.28 0.06 16 4 C 0.59 3.27 7.79 86.45 0.67 3.95 16 5 O -0.56 -7.66 14.43 -4.36 -0.06 -7.72 16 6 N -0.71 1.43 5.36 -443.98 -2.38 -0.95 16 7 C 0.12 -0.20 4.21 45.52 0.19 -0.01 16 8 H 0.10 0.31 7.50 -2.39 -0.02 0.29 16 9 C -0.12 0.91 7.39 31.12 0.23 1.14 16 10 C -0.14 0.60 4.09 -10.21 -0.04 0.56 16 11 H 0.10 -0.25 8.14 -2.38 -0.02 -0.27 16 12 C 0.07 -0.29 7.39 71.98 0.53 0.24 16 13 F -0.24 -1.10 17.36 44.97 0.78 -0.32 16 14 C -0.15 0.25 7.45 31.18 0.23 0.49 16 15 N -0.51 1.50 5.99 -171.93 -1.03 0.47 16 16 C 0.04 -0.10 6.47 41.34 0.27 0.17 16 17 C -0.06 0.33 3.08 71.24 0.22 0.55 16 18 O -0.55 1.49 12.88 -148.98 -1.92 -0.43 16 19 Si 0.79 -4.16 30.54 68.60 2.10 -2.07 16 20 C -0.21 0.05 9.27 22.01 0.20 0.25 16 21 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 22 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.06 0.55 6.50 -2.38 -0.02 0.53 16 24 H 0.41 -3.50 7.84 -92.71 -0.73 -4.23 16 25 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.11 -1.36 8.07 -2.39 -0.02 -1.38 16 27 H 0.10 -0.76 8.14 -2.38 -0.02 -0.78 16 28 H 0.09 -0.69 7.86 -2.38 -0.02 -0.71 16 29 H 0.10 -0.35 7.91 -2.39 -0.02 -0.36 16 30 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.43 -3.60 8.19 -92.71 -0.76 -4.36 16 32 H 0.14 -1.12 7.96 -2.39 -0.02 -1.14 16 33 H 0.39 -2.73 8.70 -74.06 -0.64 -3.37 16 34 H -0.28 0.08 7.11 99.48 0.71 0.78 16 35 H -0.30 -0.60 7.11 99.48 0.71 0.11 16 36 H 0.17 -0.71 6.17 -2.91 -0.02 -0.73 16 Total: 0.00 -19.67 306.54 -0.10 -19.78 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -0.96 Total: -15.91 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 3.37 Total: 7.16 kcal Atomic # 7 Polarization: 2.93 SS G_CDS: -3.41 Total: -0.48 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -1.98 Total: -8.15 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.78 Total: -0.32 kcal Atomic # 14 Polarization: -4.16 SS G_CDS: 2.10 Total: -2.07 kcal Total: -19.67 -0.10 -19.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13940406.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.252 kcal (2) G-P(sol) polarization free energy of solvation -19.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds