Wall clock time and date at job start Sun Mar 7 2021 04:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86305 * 109.47206 * 2 1 4 4 C 1.50701 * 109.47004 * 120.00006 * 2 1 3 5 5 C 1.38705 * 120.02561 * 75.00047 * 4 2 1 6 6 O 1.35898 * 120.06118 * 359.95723 * 5 4 2 7 7 C 1.42899 * 117.00413 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47248 * 179.97438 * 7 6 5 9 9 O 1.21281 * 120.00227 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00068 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99938 * 179.97438 * 10 8 7 12 12 H 1.08997 * 112.85148 * 334.67141 * 11 10 8 13 13 C 1.53782 * 113.61159 * 105.86738 * 11 10 8 14 14 C 1.53953 * 87.02036 * 139.95163 * 13 11 10 15 15 H 1.08996 * 113.53881 * 89.18427 * 14 13 11 16 16 C 1.53000 * 113.74336 * 220.05660 * 14 13 11 17 17 F 1.39898 * 109.47175 * 277.59295 * 16 14 13 18 18 C 1.53783 * 87.11339 * 334.63578 * 14 13 11 19 19 C 1.38755 * 119.88580 * 179.97438 * 5 4 2 20 20 C 1.38121 * 119.94685 * 359.97438 * 19 5 4 21 21 C 1.38288 * 120.05209 * 0.02562 * 20 19 5 22 22 C 1.38170 * 120.02687 * 254.97728 * 4 2 1 23 23 H 0.96696 * 114.00015 * 299.99993 * 1 2 3 24 24 H 1.09006 * 109.47175 * 239.99906 * 2 1 3 25 25 H 1.48507 * 109.99920 * 300.00033 * 3 2 1 26 26 H 1.48503 * 109.99737 * 61.31823 * 3 2 1 27 27 H 1.09007 * 109.46508 * 299.99479 * 7 6 5 28 28 H 1.08993 * 109.47492 * 59.99803 * 7 6 5 29 29 H 0.96994 * 120.00330 * 0.02562 * 10 8 7 30 30 H 1.09003 * 113.61339 * 254.52767 * 13 11 10 31 31 H 1.09003 * 113.61756 * 25.42920 * 13 11 10 32 32 H 1.08996 * 109.47008 * 37.59722 * 16 14 13 33 33 H 1.09001 * 109.47423 * 157.59583 * 16 14 13 34 34 H 1.09002 * 113.61515 * 270.81775 * 18 14 13 35 35 H 1.08999 * 113.61821 * 139.90492 * 18 14 13 36 36 H 1.08002 * 120.02693 * 179.72821 * 19 5 4 37 37 H 1.08001 * 119.97529 * 179.97438 * 20 19 5 38 38 H 1.08000 * 119.94097 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.96738 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.8696 -2.0940 1.3069 6 8 1.3555 -2.8106 0.2730 7 6 1.3229 -4.2315 0.4213 8 6 0.7241 -4.8520 -0.8146 9 8 0.3614 -4.1469 -1.7324 10 7 0.5925 -6.1905 -0.9006 11 6 0.0098 -6.7936 -2.1019 12 1 -0.6556 -6.1153 -2.6359 13 6 1.0434 -7.4830 -3.0083 14 6 -0.0019 -8.5933 -3.2199 15 1 -0.6701 -8.4075 -4.0608 16 6 0.5913 -10.0035 -3.2328 17 9 1.1034 -10.2824 -4.5044 18 6 -0.5949 -8.1868 -1.8605 19 6 2.3334 -2.7451 2.4410 20 6 2.8557 -2.0146 3.4904 21 6 2.9161 -0.6353 3.4117 22 6 2.4541 0.0159 2.2832 23 1 -0.3933 0.4417 0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 1.5615 2.4679 -1.2085 26 1 1.5879 2.4585 1.2243 27 1 2.3372 -4.6056 0.5611 28 1 0.7165 -4.4925 1.2886 29 1 0.8828 -6.7545 -0.1669 30 1 1.2742 -6.9211 -3.9133 31 1 1.9348 -7.8179 -2.4779 32 1 1.3923 -10.0675 -2.4964 33 1 -0.1862 -10.7271 -2.9876 34 1 -0.1521 -8.7145 -1.0157 35 1 -1.6847 -8.1922 -1.8402 36 1 2.2824 -3.8221 2.5047 37 1 3.2164 -2.5210 4.3736 38 1 3.3244 -0.0658 4.2335 39 1 2.5030 1.0931 2.2237 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_2989392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:44 Heat of formation + Delta-G solvation = -98.285328 kcal Electronic energy + Delta-G solvation = -23304.984244 eV Core-core repulsion = 19515.931293 eV Total energy + Delta-G solvation = -3789.052951 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.54829 -41.67985 -40.98729 -39.53078 -38.42368 -37.61272 -34.86650 -32.76215 -31.32634 -30.10514 -28.63883 -26.76697 -26.69781 -24.22820 -23.04496 -22.60772 -21.71283 -20.75430 -19.53621 -18.37736 -18.08387 -17.60927 -17.48527 -16.98063 -16.92771 -16.74373 -16.57158 -16.07888 -15.90313 -15.62287 -15.46631 -15.29628 -15.03106 -14.74425 -14.19809 -13.75743 -13.71692 -13.48947 -13.38117 -13.05623 -12.92084 -12.58896 -12.47546 -12.13214 -12.03601 -11.87845 -11.68929 -11.53760 -11.30478 -10.97861 -10.54399 -10.17746 -9.97308 -9.21448 -4.96260 0.23925 0.42457 1.27977 1.38700 1.48838 1.53397 1.92719 2.59381 2.70515 3.32996 3.38564 3.44503 3.48540 3.64854 3.70994 3.72974 3.89385 3.96588 4.05551 4.09827 4.13796 4.21118 4.26697 4.32366 4.37600 4.53924 4.58100 4.66555 4.67934 4.75975 4.78978 4.96089 4.98421 5.02274 5.20198 5.28922 5.38165 5.48326 5.53714 5.76697 6.27700 6.45623 6.51992 7.10144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.084 4.084 3 Si 0.783 3.217 4 C -0.165 4.165 5 C 0.129 3.871 6 O -0.314 6.314 7 C 0.037 3.963 8 C 0.511 3.489 9 O -0.574 6.574 10 N -0.697 5.697 11 C 0.116 3.884 12 H 0.088 0.912 13 C -0.147 4.147 14 C -0.143 4.143 15 H 0.095 0.905 16 C 0.067 3.933 17 F -0.242 7.242 18 C -0.115 4.115 19 C -0.211 4.211 20 C -0.074 4.074 21 C -0.154 4.154 22 C -0.088 4.088 23 H 0.381 0.619 24 H 0.095 0.905 25 H -0.308 1.308 26 H -0.264 1.264 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.423 0.577 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -5.065 9.119 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.191 4.191 3 Si 0.687 3.313 4 C -0.166 4.166 5 C 0.083 3.917 6 O -0.227 6.227 7 C -0.041 4.041 8 C 0.297 3.703 9 O -0.452 6.452 10 N -0.351 5.351 11 C 0.011 3.989 12 H 0.106 0.894 13 C -0.186 4.186 14 C -0.162 4.162 15 H 0.113 0.887 16 C 0.012 3.988 17 F -0.223 7.223 18 C -0.153 4.153 19 C -0.230 4.230 20 C -0.092 4.092 21 C -0.172 4.172 22 C -0.106 4.106 23 H 0.230 0.770 24 H 0.113 0.887 25 H -0.237 1.237 26 H -0.190 1.190 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.262 0.738 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.168 0.832 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.326 -4.005 7.715 9.307 hybrid contribution -1.144 -0.460 0.220 1.253 sum 2.181 -4.465 7.936 9.363 Atomic orbital electron populations 1.86650 1.19011 1.80366 1.49682 1.25223 0.83244 1.12482 0.98152 0.94039 0.89841 0.70827 0.76591 1.19712 1.06814 0.91499 0.98597 1.19075 0.94120 0.91095 0.87394 1.86191 1.77997 1.18755 1.39795 1.22718 1.04535 0.79903 0.96919 1.20648 0.78192 0.83227 0.88227 1.90778 1.50231 1.62686 1.41543 1.45654 1.63174 1.05406 1.20902 1.22486 0.96066 0.93998 0.86384 0.89387 1.23606 0.98254 0.96881 0.99879 1.22976 0.98923 0.94372 0.99949 0.88702 1.22232 0.99974 0.96338 0.80212 1.92738 1.89487 1.95077 1.44988 1.23267 1.02073 0.92930 0.97049 1.21597 1.05543 1.01862 0.93971 1.21406 0.95423 0.94175 0.98208 1.21406 1.02004 0.95142 0.98671 1.21188 0.96461 1.00498 0.92436 0.77014 0.88712 1.23709 1.18969 0.85679 0.86101 0.73846 0.92724 0.87838 0.88606 0.88731 0.86144 0.89467 0.82685 0.82792 0.83194 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -6.10 12.88 -148.98 -1.92 -8.02 16 2 C -0.08 -0.60 2.38 71.24 0.17 -0.43 16 3 Si 0.78 1.41 30.25 68.60 2.07 3.48 16 4 C -0.17 -0.76 5.27 -19.77 -0.10 -0.86 16 5 C 0.13 0.59 6.66 22.51 0.15 0.74 16 6 O -0.31 -2.61 9.00 -73.36 -0.66 -3.27 16 7 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 8 C 0.51 2.24 7.91 87.66 0.69 2.93 16 9 O -0.57 -9.94 16.12 16.00 0.26 -9.68 16 10 N -0.70 2.80 5.36 -440.03 -2.36 0.44 16 11 C 0.12 -0.19 4.21 45.52 0.19 0.00 16 12 H 0.09 0.44 7.50 -2.39 -0.02 0.42 16 13 C -0.15 0.28 7.45 31.18 0.23 0.51 16 14 C -0.14 0.62 4.09 -10.21 -0.04 0.58 16 15 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 16 C 0.07 -0.33 7.35 71.98 0.53 0.20 16 17 F -0.24 -1.05 17.36 44.97 0.78 -0.27 16 18 C -0.12 0.94 7.39 31.12 0.23 1.17 16 19 C -0.21 0.42 9.04 22.37 0.20 0.62 16 20 C -0.07 0.29 10.04 22.25 0.22 0.51 16 21 C -0.15 0.45 10.04 22.28 0.22 0.67 16 22 C -0.09 0.01 8.66 22.25 0.19 0.20 16 23 H 0.38 1.33 8.70 -74.06 -0.64 0.69 16 24 H 0.09 1.01 7.83 -2.38 -0.02 0.99 16 25 H -0.31 -3.14 7.11 99.48 0.71 -2.43 16 26 H -0.26 -0.59 6.69 99.48 0.67 0.07 16 27 H 0.13 -1.06 7.67 -2.38 -0.02 -1.08 16 28 H 0.12 -0.93 7.66 -2.39 -0.02 -0.95 16 29 H 0.42 -5.36 8.71 -92.71 -0.81 -6.17 16 30 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.10 -0.52 7.98 -2.39 -0.02 -0.54 16 32 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 33 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.12 -1.64 8.07 -2.39 -0.02 -1.66 16 35 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 36 H 0.16 -1.30 6.30 -2.91 -0.02 -1.32 16 37 H 0.15 -1.43 8.06 -2.91 -0.02 -1.46 16 38 H 0.15 -1.13 8.06 -2.91 -0.02 -1.15 16 39 H 0.15 -0.47 4.86 -2.91 -0.01 -0.48 16 Total: 0.00 -28.76 332.38 1.07 -27.69 By element: Atomic # 1 Polarization: -17.17 SS G_CDS: -0.37 Total: -17.54 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 3.26 Total: 7.17 kcal Atomic # 7 Polarization: 2.80 SS G_CDS: -2.36 Total: 0.44 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -2.32 Total: -20.97 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.78 Total: -0.27 kcal Atomic # 14 Polarization: 1.41 SS G_CDS: 2.07 Total: 3.48 kcal Total: -28.76 1.07 -27.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_2989392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.597 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds