Wall clock time and date at job start Sun Mar 7 2021 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38271 * 119.94563 * 119.72381 * 4 2 1 6 6 C 1.38146 * 120.05540 * 179.72476 * 5 4 2 7 7 C 1.38728 * 119.94378 * 0.55158 * 6 5 4 8 8 O 1.35895 * 120.05721 * 179.74753 * 7 6 5 9 9 C 1.42904 * 116.99866 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47020 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99887 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99764 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99956 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.84902 * 334.66797 * 13 12 10 15 15 C 1.53773 * 113.61461 * 105.86028 * 13 12 10 16 16 C 1.53957 * 87.02012 * 139.95388 * 15 13 12 17 17 H 1.08995 * 113.61508 * 89.19990 * 16 15 13 18 18 C 1.52998 * 113.67030 * 220.07143 * 16 15 13 19 19 F 1.39896 * 109.47356 * 162.55688 * 18 16 15 20 20 C 1.53775 * 113.61614 * 203.47158 * 13 12 10 21 21 C 1.38735 * 119.89088 * 359.71936 * 7 6 5 22 22 C 1.38147 * 119.94129 * 0.02562 * 21 7 6 23 23 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 24 24 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 25 25 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 26 26 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 27 27 H 1.08003 * 119.96765 * 359.97438 * 5 4 2 28 28 H 1.08003 * 120.02767 * 180.27535 * 6 5 4 29 29 H 1.08994 * 109.46578 * 299.99532 * 9 8 7 30 30 H 1.08990 * 109.47287 * 60.00031 * 9 8 7 31 31 H 0.96994 * 120.00281 * 359.97438 * 12 10 9 32 32 H 1.08993 * 113.62165 * 254.52926 * 15 13 12 33 33 H 1.09003 * 113.61456 * 25.43480 * 15 13 12 34 34 H 1.09001 * 109.47228 * 282.56074 * 18 16 15 35 35 H 1.09007 * 109.47072 * 42.55878 * 18 16 15 36 36 H 1.09005 * 113.61511 * 334.57014 * 20 13 12 37 37 H 1.09001 * 113.61503 * 105.38616 * 20 13 12 38 38 H 1.07994 * 120.03367 * 180.02562 * 21 7 6 39 39 H 1.07996 * 119.97399 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7214 -0.0355 -2.1428 6 6 3.1879 -0.6861 -3.2687 7 6 2.8534 -2.0142 -3.4894 8 8 3.3068 -2.6549 -4.5988 9 6 4.1232 -1.8996 -5.4961 10 6 4.5291 -2.7687 -6.6584 11 8 4.1563 -3.9216 -6.7128 12 7 5.3062 -2.2649 -7.6375 13 6 5.7004 -3.1096 -8.7677 14 1 5.7017 -4.1716 -8.5222 15 6 4.9558 -2.7799 -10.0722 16 6 6.2959 -2.9984 -10.7979 17 1 6.4607 -4.0298 -11.1095 18 6 6.5592 -1.9901 -11.9182 19 9 7.9194 -2.0011 -12.2453 20 6 6.9842 -2.6383 -9.4708 21 6 2.0558 -2.6875 -2.5755 22 6 1.5963 -2.0340 -1.4484 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 0.8900 25 1 1.5614 2.4679 1.2086 26 1 3.5344 1.7704 -0.0321 27 1 2.9775 0.9999 -1.9728 28 1 3.8087 -0.1599 -3.9787 29 1 3.5612 -1.0408 -5.8630 30 1 5.0145 -1.5539 -4.9728 31 1 5.6040 -1.3428 -7.5942 32 1 4.1915 -3.5110 -10.3355 33 1 4.5950 -1.7525 -10.1214 34 1 5.9722 -2.2607 -12.7959 35 1 6.2740 -0.9926 -11.5837 36 1 7.1792 -1.5721 -9.3552 37 1 7.8554 -3.2544 -9.2480 38 1 1.7944 -3.7215 -2.7448 39 1 0.9751 -2.5574 -0.7368 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_2989410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:47 Heat of formation + Delta-G solvation = -100.529612 kcal Electronic energy + Delta-G solvation = -22681.059896 eV Core-core repulsion = 18891.909626 eV Total energy + Delta-G solvation = -3789.150270 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.52563 -41.62746 -40.93415 -39.59339 -38.78761 -37.10788 -34.84006 -32.40806 -31.73185 -30.27820 -28.73945 -26.72221 -26.22844 -24.32884 -23.43139 -22.30820 -21.70273 -20.72569 -19.50870 -18.44478 -18.07920 -17.63438 -17.42924 -16.97116 -16.84964 -16.68644 -16.43169 -16.02683 -15.88727 -15.57168 -15.45873 -15.41697 -14.76745 -14.62624 -14.32452 -13.76354 -13.64617 -13.51971 -13.47122 -13.26353 -13.08549 -12.59904 -12.24723 -12.07231 -12.05548 -11.81119 -11.71940 -11.52144 -11.35314 -10.96231 -10.40309 -10.16248 -10.04833 -9.22847 -4.98342 0.27099 0.30338 1.34886 1.40728 1.48657 1.65235 1.99655 2.59516 2.65531 3.34007 3.40156 3.50217 3.56896 3.66669 3.73019 3.76167 3.83089 3.95522 4.03018 4.09975 4.10800 4.19089 4.27319 4.30586 4.42412 4.50814 4.63794 4.67260 4.69056 4.79100 4.84160 4.96791 4.97751 5.04229 5.15354 5.20459 5.24950 5.49553 5.49808 5.69502 6.25973 6.46211 6.80374 7.11252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.074 4.074 3 Si 0.784 3.216 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.199 4.199 7 C 0.121 3.879 8 O -0.321 6.321 9 C 0.036 3.964 10 C 0.512 3.488 11 O -0.575 6.575 12 N -0.698 5.698 13 C 0.117 3.883 14 H 0.091 0.909 15 C -0.134 4.134 16 C -0.143 4.143 17 H 0.097 0.903 18 C 0.068 3.932 19 F -0.237 7.237 20 C -0.129 4.129 21 C -0.167 4.167 22 C -0.061 4.061 23 H 0.395 0.605 24 H 0.102 0.898 25 H -0.304 1.304 26 H -0.281 1.281 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.423 0.577 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.125 0.875 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 8.073 -3.819 8.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.184 4.184 3 Si 0.690 3.310 4 C -0.162 4.162 5 C -0.093 4.093 6 C -0.218 4.218 7 C 0.076 3.924 8 O -0.234 6.234 9 C -0.042 4.042 10 C 0.299 3.701 11 O -0.454 6.454 12 N -0.352 5.352 13 C 0.012 3.988 14 H 0.109 0.891 15 C -0.173 4.173 16 C -0.163 4.163 17 H 0.115 0.885 18 C 0.013 3.987 19 F -0.219 7.219 20 C -0.167 4.167 21 C -0.186 4.186 22 C -0.079 4.079 23 H 0.245 0.755 24 H 0.119 0.881 25 H -0.233 1.233 26 H -0.208 1.208 27 H 0.171 0.829 28 H 0.184 0.816 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.261 0.739 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.299 7.325 -2.966 8.009 hybrid contribution 0.282 -0.748 0.289 0.850 sum 1.580 6.577 -2.677 7.275 Atomic orbital electron populations 1.86462 1.17498 1.82227 1.50503 1.25198 0.85154 1.11103 0.96932 0.93746 0.77714 0.74811 0.84723 1.20366 1.02094 0.95278 0.98436 1.21075 0.95421 1.00066 0.92748 1.21512 1.05708 0.93205 1.01331 1.19205 0.94641 0.92041 0.86551 1.86131 1.65134 1.40412 1.31764 1.22772 0.97708 0.94318 0.89362 1.20634 0.78193 0.87537 0.83770 1.90766 1.55580 1.20370 1.78654 1.45679 1.51202 1.16524 1.21791 1.22488 0.96252 0.95851 0.84227 0.89102 1.23446 0.95995 1.03857 0.93979 1.22970 0.97934 1.00842 0.94529 0.88451 1.22159 0.76548 1.01156 0.98847 1.92742 1.36771 1.98040 1.94313 1.23346 0.96230 1.03473 0.93644 1.20622 1.01593 1.01255 0.95143 1.20896 0.97194 0.94099 0.95733 0.75509 0.88050 1.23299 1.20762 0.82888 0.81625 0.85182 0.85748 0.73879 0.91275 0.87256 0.89571 0.88532 0.87194 0.90767 0.85679 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.18 12.77 -148.98 -1.90 -2.08 16 2 C -0.07 0.06 2.82 71.24 0.20 0.26 16 3 Si 0.78 -2.93 29.78 68.60 2.04 -0.88 16 4 C -0.16 0.03 5.39 -19.85 -0.11 -0.08 16 5 C -0.08 0.27 8.66 22.26 0.19 0.46 16 6 C -0.20 0.70 9.04 22.37 0.20 0.90 16 7 C 0.12 0.33 6.69 22.51 0.15 0.48 16 8 O -0.32 -1.67 9.67 -73.33 -0.71 -2.38 16 9 C 0.04 -0.16 5.22 71.24 0.37 0.21 16 10 C 0.51 0.79 7.91 87.66 0.69 1.48 16 11 O -0.58 -7.97 16.12 16.00 0.26 -7.71 16 12 N -0.70 4.11 5.36 -440.04 -2.36 1.75 16 13 C 0.12 -0.39 4.21 45.51 0.19 -0.19 16 14 H 0.09 0.25 7.50 -2.38 -0.02 0.23 16 15 C -0.13 0.79 7.45 31.18 0.23 1.02 16 16 C -0.14 0.80 4.11 -10.21 -0.04 0.76 16 17 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 18 C 0.07 -0.39 7.33 71.98 0.53 0.14 16 19 F -0.24 -0.49 17.30 44.97 0.78 0.29 16 20 C -0.13 0.82 7.34 31.12 0.23 1.05 16 21 C -0.17 -0.78 9.99 22.37 0.22 -0.56 16 22 C -0.06 -0.17 9.60 22.25 0.21 0.05 16 23 H 0.39 -3.13 8.70 -74.06 -0.64 -3.77 16 24 H 0.10 0.10 7.96 -2.39 -0.02 0.08 16 25 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 26 H -0.28 0.00 7.11 99.48 0.71 0.70 16 27 H 0.15 -1.35 4.87 -2.91 -0.01 -1.37 16 28 H 0.17 -1.85 6.30 -2.91 -0.02 -1.87 16 29 H 0.13 -1.53 7.66 -2.39 -0.02 -1.55 16 30 H 0.12 -1.34 7.66 -2.39 -0.02 -1.36 16 31 H 0.42 -5.91 8.71 -92.71 -0.81 -6.72 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.11 -1.05 8.04 -2.39 -0.02 -1.07 16 34 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.10 -0.97 8.06 -2.38 -0.02 -0.99 16 36 H 0.11 -1.11 8.07 -2.38 -0.02 -1.13 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.13 0.28 8.06 -2.91 -0.02 0.25 16 Total: 0.00 -26.32 333.19 1.06 -25.25 By element: Atomic # 1 Polarization: -19.90 SS G_CDS: -0.33 Total: -20.23 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 3.28 Total: 5.98 kcal Atomic # 7 Polarization: 4.11 SS G_CDS: -2.36 Total: 1.75 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -2.35 Total: -12.17 kcal Atomic # 9 Polarization: -0.49 SS G_CDS: 0.78 Total: 0.29 kcal Atomic # 14 Polarization: -2.93 SS G_CDS: 2.04 Total: -0.88 kcal Total: -26.32 1.06 -25.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_2989410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.277 kcal (2) G-P(sol) polarization free energy of solvation -26.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds