Wall clock time and date at job start Sun Mar 7 2021 04:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.46922 * 2 1 4 4 C 1.50701 * 109.46980 * 239.99999 * 2 1 3 5 5 C 1.38244 * 119.96874 * 120.29327 * 4 2 1 6 6 C 1.38288 * 120.10735 * 180.25379 * 5 4 2 7 7 C 1.38126 * 120.05387 * 359.44975 * 6 5 4 8 8 C 1.38746 * 119.94556 * 0.28104 * 7 6 5 9 9 O 1.35900 * 120.05764 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99943 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47331 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46845 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46957 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99576 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00050 * 180.02562 * 13 12 11 16 16 C 1.46505 * 120.00152 * 179.97438 * 15 13 12 17 17 H 1.09000 * 112.84365 * 25.33558 * 16 15 13 18 18 C 1.53774 * 113.61508 * 156.52899 * 16 15 13 19 19 C 1.53786 * 87.08145 * 139.98774 * 18 16 15 20 20 H 1.08997 * 113.61598 * 89.11443 * 19 18 16 21 21 C 1.53000 * 113.61058 * 219.93640 * 19 18 16 22 22 F 1.39900 * 109.46924 * 184.99645 * 21 19 18 23 23 C 1.53778 * 113.61852 * 254.14051 * 16 15 13 24 24 C 1.38166 * 119.97212 * 299.99951 * 4 2 1 25 25 H 0.96705 * 114.00195 * 59.99789 * 1 2 3 26 26 H 1.08997 * 109.47022 * 119.99963 * 2 1 3 27 27 H 1.48497 * 110.00541 * 298.67979 * 3 2 1 28 28 H 1.48503 * 110.00248 * 60.00061 * 3 2 1 29 29 H 1.07993 * 119.94966 * 0.02562 * 5 4 2 30 30 H 1.08002 * 119.97455 * 179.73146 * 6 5 4 31 31 H 1.08000 * 120.02655 * 180.29782 * 7 6 5 32 32 H 1.09002 * 109.46947 * 300.00698 * 10 9 8 33 33 H 1.08998 * 109.47276 * 60.00138 * 10 9 8 34 34 H 1.08997 * 109.46741 * 300.00019 * 11 10 9 35 35 H 1.08992 * 109.46839 * 60.00090 * 11 10 9 36 36 H 1.08997 * 109.47587 * 299.99649 * 12 11 10 37 37 H 1.09006 * 109.47252 * 60.00333 * 12 11 10 38 38 H 0.97001 * 120.00583 * 0.02562 * 15 13 12 39 39 H 1.09001 * 113.61697 * 254.53336 * 18 16 15 40 40 H 1.09002 * 113.62024 * 25.43454 * 18 16 15 41 41 H 1.08997 * 109.47464 * 304.99482 * 21 19 18 42 42 H 1.09002 * 109.47538 * 64.99998 * 21 19 18 43 43 H 1.09000 * 113.61217 * 334.56304 * 23 16 15 44 44 H 1.09001 * 113.61231 * 105.46886 * 23 16 15 45 45 H 1.08007 * 120.02833 * 0.04906 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7311 -0.0397 -2.1370 6 6 3.1893 -0.6873 -3.2697 7 6 2.8581 -2.0097 -3.4922 8 6 2.0601 -2.6866 -2.5811 9 8 1.7333 -3.9878 -2.7975 10 6 2.2456 -4.5966 -3.9845 11 6 1.7751 -6.0508 -4.0558 12 6 2.3232 -6.7023 -5.3270 13 6 1.8603 -8.1348 -5.3970 14 8 1.1605 -8.5895 -4.5170 15 7 2.2239 -8.9104 -6.4374 16 6 1.7744 -10.3031 -6.5052 17 1 0.8498 -10.4766 -5.9546 18 6 1.7586 -10.8767 -7.9319 19 6 2.3027 -12.1824 -7.3285 20 1 1.5231 -12.8709 -7.0026 21 6 3.3696 -12.8585 -8.1920 22 9 3.7198 -14.0877 -7.6230 23 6 2.8804 -11.3236 -6.1888 24 6 1.5972 -2.0332 -1.4485 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5138 0.8900 27 1 1.5879 2.4586 -1.2242 28 1 1.5614 2.4679 1.2085 29 1 2.9954 0.9926 -1.9622 30 1 3.8103 -0.1600 -3.9787 31 1 3.2201 -2.5164 -4.3746 32 1 1.8819 -4.0541 -4.8572 33 1 3.3351 -4.5674 -3.9668 34 1 2.1386 -6.5934 -3.1832 35 1 0.6857 -6.0796 -4.0739 36 1 1.9593 -6.1596 -6.1995 37 1 3.4127 -6.6734 -5.3095 38 1 2.7839 -8.5469 -7.1411 39 1 0.7577 -10.9739 -8.3524 40 1 2.4570 -10.3839 -8.6084 41 1 2.9756 -13.0216 -9.1951 42 1 4.2510 -12.2195 -8.2472 43 1 3.8860 -10.9533 -6.3878 44 1 2.7837 -11.7811 -5.2042 45 1 0.9756 -2.5579 -0.7380 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_4549616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:47:55 Heat of formation + Delta-G solvation = -116.534062 kcal Electronic energy + Delta-G solvation = -25736.976504 eV Core-core repulsion = 21636.056990 eV Total energy + Delta-G solvation = -4100.919513 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 324.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.55395 -41.34511 -41.13444 -39.54117 -39.15282 -37.42352 -34.92723 -34.63599 -32.46693 -31.26349 -29.65189 -28.10815 -26.83648 -26.74496 -24.26184 -23.66509 -22.82010 -21.84527 -21.50602 -20.65798 -19.22702 -18.13793 -17.93825 -17.60323 -17.46436 -17.14198 -16.96106 -16.84827 -16.77278 -16.38609 -16.16580 -15.77220 -15.62878 -15.50224 -14.92674 -14.70827 -14.65296 -14.21179 -14.11024 -13.64744 -13.47490 -13.31797 -13.25142 -13.08464 -12.89066 -12.74304 -12.43685 -12.33024 -12.28649 -12.04829 -11.94968 -11.61033 -11.55914 -11.51205 -11.28411 -10.90419 -10.68706 -10.06594 -9.91769 -9.24111 -4.91227 0.21967 0.41576 1.29240 1.58593 1.61815 1.91070 1.99959 2.39985 2.68333 3.35349 3.38967 3.41647 3.57564 3.64976 3.68126 3.75318 3.85329 3.88340 3.98130 4.08046 4.12323 4.20572 4.22641 4.25841 4.29105 4.36196 4.41748 4.46086 4.55480 4.57672 4.63731 4.68165 4.69873 4.77377 4.82442 4.99618 4.99733 5.00582 5.03263 5.15968 5.27386 5.29939 5.39360 5.45841 5.55985 5.75453 6.43600 6.45422 6.54327 7.25384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.093 4.093 3 Si 0.783 3.217 4 C -0.083 4.083 5 C -0.160 4.160 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.115 3.885 9 O -0.340 6.340 10 C 0.058 3.942 11 C -0.103 4.103 12 C -0.127 4.127 13 C 0.507 3.493 14 O -0.593 6.593 15 N -0.707 5.707 16 C 0.114 3.886 17 H 0.088 0.912 18 C -0.117 4.117 19 C -0.144 4.144 20 H 0.094 0.906 21 C 0.066 3.934 22 F -0.242 7.242 23 C -0.148 4.148 24 C -0.153 4.153 25 H 0.386 0.614 26 H 0.120 0.880 27 H -0.278 1.278 28 H -0.304 1.304 29 H 0.148 0.852 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.421 0.579 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 3.873 -9.391 12.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.201 4.201 3 Si 0.688 3.312 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.070 3.930 9 O -0.254 6.254 10 C -0.016 4.016 11 C -0.141 4.141 12 C -0.166 4.166 13 C 0.295 3.705 14 O -0.474 6.474 15 N -0.359 5.359 16 C 0.009 3.991 17 H 0.106 0.894 18 C -0.155 4.155 19 C -0.163 4.163 20 H 0.112 0.888 21 C 0.012 3.988 22 F -0.223 7.223 23 C -0.187 4.187 24 C -0.171 4.171 25 H 0.235 0.765 26 H 0.138 0.862 27 H -0.204 1.204 28 H -0.233 1.233 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.259 0.741 39 H 0.103 0.897 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.208 3.889 -8.120 10.937 hybrid contribution -1.260 -0.618 -0.304 1.436 sum 4.949 3.272 -8.424 10.303 Atomic orbital electron populations 1.86575 1.18672 1.80539 1.50117 1.25445 0.83445 1.12748 0.98450 0.93886 0.90088 0.70839 0.76427 1.20144 0.97857 0.93344 0.96993 1.21185 1.00244 1.00941 0.95334 1.21316 0.97422 0.93506 0.96765 1.21610 1.02643 0.96849 1.01247 1.19205 0.95278 0.83568 0.94935 1.86056 1.71704 1.22892 1.44792 1.22996 0.99744 0.93040 0.85832 1.21158 1.01488 0.93077 0.98372 1.21542 1.04695 0.90484 0.99877 1.21277 0.78914 0.89318 0.80977 1.90738 1.39995 1.76322 1.40304 1.45883 1.53233 1.11612 1.25128 1.22407 0.97837 0.80212 0.98682 0.89437 1.23259 1.03451 0.93691 0.95110 1.22996 0.98949 0.96898 0.97505 0.88812 1.22251 0.98943 0.80529 0.97080 1.92738 1.93867 1.48085 1.87640 1.23611 0.99842 0.96592 0.98609 1.20319 1.04208 0.94907 0.97715 0.76477 0.86196 1.20432 1.23289 0.83440 0.82245 0.82819 0.89830 0.89662 0.92333 0.92381 0.85252 0.85278 0.74127 0.89659 0.86390 0.88719 0.88706 0.87974 0.92788 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.98 12.77 -148.98 -1.90 -4.88 16 2 C -0.09 -0.16 2.82 71.24 0.20 0.05 16 3 Si 0.78 -1.32 29.79 68.60 2.04 0.72 16 4 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 5 C -0.16 0.24 8.67 22.28 0.19 0.43 16 6 C -0.07 0.22 10.04 22.26 0.22 0.45 16 7 C -0.21 0.23 9.04 22.36 0.20 0.43 16 8 C 0.12 0.55 6.69 22.50 0.15 0.70 16 9 O -0.34 -2.05 10.14 -92.42 -0.94 -2.99 16 10 C 0.06 -0.16 4.74 71.98 0.34 0.18 16 11 C -0.10 0.01 4.87 30.59 0.15 0.16 16 12 C -0.13 0.92 5.70 29.85 0.17 1.09 16 13 C 0.51 0.40 7.83 87.66 0.69 1.09 16 14 O -0.59 -7.48 15.60 -3.03 -0.05 -7.52 16 15 N -0.71 3.76 5.36 -440.05 -2.36 1.40 16 16 C 0.11 -0.28 4.21 45.51 0.19 -0.08 16 17 H 0.09 0.34 7.50 -2.39 -0.02 0.32 16 18 C -0.12 0.97 7.39 31.12 0.23 1.20 16 19 C -0.14 0.63 4.09 -10.21 -0.04 0.59 16 20 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 21 C 0.07 -0.32 7.39 71.98 0.53 0.21 16 22 F -0.24 -1.06 17.36 44.97 0.78 -0.28 16 23 C -0.15 0.34 7.45 31.18 0.23 0.58 16 24 C -0.15 -0.98 9.55 22.36 0.21 -0.77 16 25 H 0.39 -0.22 8.70 -74.05 -0.64 -0.87 16 26 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 27 H -0.28 -0.35 7.11 99.48 0.71 0.35 16 28 H -0.30 -1.89 7.11 99.48 0.71 -1.18 16 29 H 0.15 -0.89 4.87 -2.91 -0.01 -0.90 16 30 H 0.16 -1.47 8.06 -2.91 -0.02 -1.49 16 31 H 0.15 -1.05 6.30 -2.91 -0.02 -1.07 16 32 H 0.08 -0.56 7.66 -2.39 -0.02 -0.58 16 33 H 0.09 -0.59 7.66 -2.39 -0.02 -0.61 16 34 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 35 H 0.06 0.28 8.10 -2.39 -0.02 0.26 16 36 H 0.13 -1.69 8.14 -2.39 -0.02 -1.71 16 37 H 0.13 -1.68 8.14 -2.38 -0.02 -1.70 16 38 H 0.42 -5.52 8.71 -92.71 -0.81 -6.33 16 39 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.12 -1.58 8.07 -2.39 -0.02 -1.59 16 41 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.09 -0.83 7.86 -2.39 -0.02 -0.85 16 43 H 0.10 -0.54 7.91 -2.39 -0.02 -0.56 16 44 H 0.05 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 Total: 0.00 -27.05 375.47 0.74 -26.31 By element: Atomic # 1 Polarization: -18.32 SS G_CDS: -0.40 Total: -18.72 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 3.57 Total: 5.98 kcal Atomic # 7 Polarization: 3.76 SS G_CDS: -2.36 Total: 1.40 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -2.89 Total: -15.40 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.78 Total: -0.28 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: 2.04 Total: 0.72 kcal Total: -27.05 0.74 -26.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_4549616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.228 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds