Wall clock time and date at job start Sun Mar 7 2021 04:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86304 * 109.47123 * 2 1 4 4 C 1.50694 * 109.47552 * 239.99486 * 2 1 3 5 5 C 1.38253 * 119.94543 * 119.97551 * 4 2 1 6 6 C 1.38159 * 120.05637 * 179.77030 * 5 4 2 7 7 C 1.38706 * 119.94487 * 0.48956 * 6 5 4 8 8 O 1.35899 * 120.05784 * 179.79070 * 7 6 5 9 9 C 1.42903 * 117.00040 * 359.72458 * 8 7 6 10 10 C 1.50693 * 109.47071 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00552 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99995 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00320 * 179.97438 * 12 10 9 14 14 H 1.09003 * 112.85229 * 23.80532 * 13 12 10 15 15 C 1.53787 * 113.61698 * 154.99912 * 13 12 10 16 16 C 1.53781 * 87.07987 * 140.06629 * 15 13 12 17 17 H 1.09002 * 113.61228 * 89.11929 * 16 15 13 18 18 C 1.52995 * 113.61293 * 219.93573 * 16 15 13 19 19 F 1.39902 * 109.47433 * 298.47490 * 18 16 15 20 20 C 1.53779 * 113.69143 * 252.53744 * 13 12 10 21 21 C 1.38752 * 119.88798 * 359.51180 * 7 6 5 22 22 N 1.48006 * 120.03010 * 180.22946 * 21 7 6 23 23 O 1.21799 * 120.00252 * 180.02562 * 22 21 7 24 24 O 1.21803 * 119.99615 * 0.02562 * 22 21 7 25 25 C 1.38123 * 119.94741 * 0.25847 * 21 7 6 26 26 H 0.96705 * 114.00061 * 300.00428 * 1 2 3 27 27 H 1.09003 * 109.46987 * 119.99777 * 2 1 3 28 28 H 1.48496 * 109.99755 * 178.67771 * 3 2 1 29 29 H 1.48498 * 109.99812 * 299.99819 * 3 2 1 30 30 H 1.08003 * 119.96513 * 0.03017 * 5 4 2 31 31 H 1.08001 * 120.02904 * 180.26120 * 6 5 4 32 32 H 1.08997 * 109.47241 * 59.99843 * 9 8 7 33 33 H 1.08999 * 109.46426 * 299.99804 * 9 8 7 34 34 H 0.97002 * 119.99641 * 359.97438 * 12 10 9 35 35 H 1.09005 * 113.61051 * 25.52033 * 15 13 12 36 36 H 1.08993 * 113.61359 * 254.62070 * 15 13 12 37 37 H 1.09005 * 109.47494 * 58.47441 * 18 16 15 38 38 H 1.09002 * 109.47422 * 178.47250 * 18 16 15 39 39 H 1.09003 * 113.61775 * 105.46447 * 20 13 12 40 40 H 1.08996 * 113.61960 * 334.55173 * 20 13 12 41 41 H 1.07991 * 119.97776 * 179.97438 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.7258 -0.0374 -2.1399 6 6 3.1916 -0.6879 -3.2662 7 6 2.8533 -2.0145 -3.4893 8 8 3.3067 -2.6553 -4.5986 9 6 4.1228 -1.9000 -5.4961 10 6 4.5277 -2.7689 -6.6589 11 8 4.1547 -3.9216 -6.7134 12 7 5.3046 -2.2650 -7.6383 13 6 5.6987 -3.1098 -8.7684 14 1 5.0125 -3.9400 -8.9358 15 6 6.0295 -2.3173 -10.0441 16 6 7.1901 -3.3026 -10.2608 17 1 6.9117 -4.1855 -10.8362 18 6 8.4699 -2.6389 -10.7731 19 9 8.2232 -2.0482 -12.0170 20 6 7.1779 -3.5294 -8.7398 21 6 2.0559 -2.6878 -2.5749 22 7 1.6971 -4.1048 -2.8073 23 8 0.9968 -4.6952 -2.0046 24 8 2.1024 -4.6805 -3.8012 25 6 1.5966 -2.0344 -1.4480 26 1 -0.3933 0.4418 0.7650 27 1 1.7923 -0.5138 0.8900 28 1 3.5346 1.7703 0.0322 29 1 1.5615 2.4679 -1.2085 30 1 2.9859 0.9966 -1.9676 31 1 3.8156 -0.1629 -3.9743 32 1 5.0142 -1.5540 -4.9729 33 1 3.5606 -1.0414 -5.8631 34 1 5.6027 -1.3430 -7.5949 35 1 6.3549 -1.2950 -9.8509 36 1 5.2558 -2.3788 -10.8093 37 1 8.7914 -1.8747 -10.0653 38 1 9.2527 -3.3904 -10.8766 39 1 7.3313 -4.5696 -8.4523 40 1 7.8172 -2.8386 -8.1902 41 1 0.9756 -2.5579 -0.7363 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_4549638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:48:14 Heat of formation + Delta-G solvation = -93.110659 kcal Electronic energy + Delta-G solvation = -29029.920816 eV Core-core repulsion = 24410.075820 eV Total energy + Delta-G solvation = -4619.844996 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.120 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.54725 -43.38656 -41.90680 -41.12566 -39.86004 -39.03545 -37.65707 -37.40104 -34.89490 -33.64580 -32.45075 -30.53803 -28.91284 -27.92187 -26.74351 -26.58813 -24.52467 -23.51700 -22.74215 -21.79528 -20.79160 -20.53125 -19.87285 -19.26716 -18.75199 -18.58283 -18.31456 -17.76622 -17.67122 -17.35114 -16.95847 -16.71483 -16.54611 -16.05488 -15.96242 -15.81683 -15.63946 -15.29026 -14.95642 -14.51142 -14.27099 -14.03481 -13.85095 -13.51681 -13.40400 -13.10881 -13.04466 -12.77246 -12.73675 -12.62058 -12.43964 -12.33518 -12.22649 -11.97785 -11.80448 -11.56630 -11.38371 -11.03317 -10.99244 -10.43354 -10.19572 -9.85902 -4.89432 -1.42005 -0.37236 0.03918 0.24313 1.11320 1.27173 1.35698 1.68043 1.89042 1.92003 2.24800 2.96661 3.06658 3.23209 3.31726 3.37133 3.45741 3.48557 3.53393 3.64575 3.71913 3.79690 3.91270 3.92600 4.07024 4.12772 4.16847 4.22704 4.24850 4.39333 4.48232 4.62502 4.65820 4.68417 4.76667 4.81975 4.93894 4.94724 5.02147 5.09748 5.16577 5.46006 5.63111 6.36501 6.37970 6.85738 7.07769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.088 4.088 3 Si 0.779 3.221 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.288 6.288 9 C 0.023 3.977 10 C 0.509 3.491 11 O -0.565 6.565 12 N -0.697 5.697 13 C 0.117 3.883 14 H 0.090 0.910 15 C -0.128 4.128 16 C -0.144 4.144 17 H 0.097 0.903 18 C 0.068 3.932 19 F -0.237 7.237 20 C -0.134 4.134 21 C -0.101 4.101 22 N 0.034 4.966 23 O -0.189 6.189 24 O -0.174 6.174 25 C 0.002 3.998 26 H 0.407 0.593 27 H 0.099 0.901 28 H -0.270 1.270 29 H -0.282 1.282 30 H 0.163 0.837 31 H 0.203 0.797 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.423 0.577 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 13.796 4.379 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.196 4.196 3 Si 0.681 3.319 4 C -0.118 4.118 5 C -0.044 4.044 6 C -0.208 4.208 7 C 0.144 3.856 8 O -0.198 6.198 9 C -0.054 4.054 10 C 0.295 3.705 11 O -0.442 6.442 12 N -0.351 5.351 13 C 0.012 3.988 14 H 0.109 0.891 15 C -0.166 4.166 16 C -0.163 4.163 17 H 0.115 0.885 18 C 0.013 3.987 19 F -0.218 7.218 20 C -0.173 4.173 21 C -0.186 4.186 22 N 0.546 4.454 23 O -0.399 6.399 24 O -0.387 6.387 25 C -0.017 4.017 26 H 0.259 0.741 27 H 0.117 0.883 28 H -0.196 1.196 29 H -0.209 1.209 30 H 0.180 0.820 31 H 0.220 0.780 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.262 0.738 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.131 13.689 3.381 15.376 hybrid contribution -0.245 -1.206 -0.467 1.317 sum 5.886 12.483 2.913 14.105 Atomic orbital electron populations 1.86445 1.17115 1.82699 1.51610 1.25024 0.86228 1.12346 0.96004 0.93432 0.78076 0.74270 0.86080 1.19700 1.00830 0.92429 0.98886 1.21492 0.91673 1.00171 0.91101 1.21678 1.06158 0.91033 1.01897 1.18853 0.89879 0.91707 0.85210 1.86476 1.63680 1.39479 1.30158 1.23141 0.98086 0.94592 0.89596 1.20473 0.78380 0.87629 0.84008 1.90846 1.55177 1.20144 1.78009 1.45630 1.51307 1.16596 1.21557 1.22492 0.95980 0.94741 0.85617 0.89139 1.23339 0.97847 0.99574 0.95840 1.22944 0.95929 1.00190 0.97270 0.88468 1.22148 0.97476 0.98231 0.80803 1.92744 1.95963 1.86366 1.46732 1.23425 0.96156 1.03047 0.94634 1.20877 1.12965 0.81930 1.02833 1.43791 0.98345 1.03701 0.99583 1.94495 1.35475 1.68016 1.41958 1.94686 1.56488 1.69130 1.18353 1.20892 0.93583 0.94437 0.92761 0.74059 0.88341 1.19606 1.20904 0.82036 0.78025 0.83866 0.84238 0.73819 0.87153 0.90835 0.88514 0.89605 0.91357 0.87171 0.82090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.42 12.74 -148.98 -1.90 0.52 16 2 C -0.09 0.55 2.81 71.23 0.20 0.75 16 3 Si 0.78 -7.81 29.78 68.60 2.04 -5.76 16 4 C -0.12 0.11 5.42 -19.85 -0.11 0.00 16 5 C -0.03 0.13 8.66 22.25 0.19 0.32 16 6 C -0.19 1.06 9.04 22.36 0.20 1.26 16 7 C 0.19 0.74 6.67 22.50 0.15 0.89 16 8 O -0.29 -1.91 7.68 -63.39 -0.49 -2.40 16 9 C 0.02 -0.12 5.22 71.23 0.37 0.25 16 10 C 0.51 1.03 7.91 87.65 0.69 1.72 16 11 O -0.56 -8.88 16.10 16.01 0.26 -8.62 16 12 N -0.70 4.04 5.36 -440.04 -2.36 1.69 16 13 C 0.12 -0.31 4.24 45.52 0.19 -0.11 16 14 H 0.09 0.36 7.46 -2.39 -0.02 0.35 16 15 C -0.13 0.74 7.29 31.12 0.23 0.97 16 16 C -0.14 0.72 4.12 -10.27 -0.04 0.68 16 17 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 18 C 0.07 -0.37 7.38 71.98 0.53 0.16 16 19 F -0.24 -0.54 17.24 44.97 0.78 0.24 16 20 C -0.13 0.71 7.44 31.12 0.23 0.94 16 21 C -0.10 -0.96 6.87 36.47 0.25 -0.71 16 22 N 0.03 0.60 4.45 -46.24 -0.21 0.40 16 23 O -0.19 -3.56 18.45 18.89 0.35 -3.21 16 24 O -0.17 -3.93 17.24 25.60 0.44 -3.49 16 25 C 0.00 0.01 9.12 22.25 0.20 0.21 16 26 H 0.41 -5.91 8.74 -74.05 -0.65 -6.56 16 27 H 0.10 -0.95 7.96 -2.39 -0.02 -0.97 16 28 H -0.27 1.83 7.11 99.48 0.71 2.54 16 29 H -0.28 1.15 7.11 99.48 0.71 1.85 16 30 H 0.16 -1.47 4.87 -2.91 -0.01 -1.49 16 31 H 0.20 -3.16 6.30 -2.91 -0.02 -3.18 16 32 H 0.14 -2.03 7.65 -2.39 -0.02 -2.05 16 33 H 0.14 -1.86 7.67 -2.39 -0.02 -1.88 16 34 H 0.42 -6.15 8.73 -92.71 -0.81 -6.96 16 35 H 0.11 -1.08 8.08 -2.38 -0.02 -1.10 16 36 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 37 H 0.10 -0.95 7.98 -2.38 -0.02 -0.97 16 38 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.11 -1.03 7.99 -2.39 -0.02 -1.05 16 41 H 0.16 0.73 7.61 -2.92 -0.02 0.71 16 Total: 0.00 -37.38 359.06 1.91 -35.47 By element: Atomic # 1 Polarization: -21.86 SS G_CDS: -0.31 Total: -22.17 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 3.30 Total: 7.33 kcal Atomic # 7 Polarization: 4.65 SS G_CDS: -2.56 Total: 2.09 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.34 Total: -17.20 kcal Atomic # 9 Polarization: -0.54 SS G_CDS: 0.78 Total: 0.24 kcal Atomic # 14 Polarization: -7.81 SS G_CDS: 2.04 Total: -5.76 kcal Total: -37.38 1.91 -35.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_4549638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.638 kcal (2) G-P(sol) polarization free energy of solvation -37.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds