Wall clock time and date at job start Sun Mar 7 2021 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00072 * 2 1 4 4 O 1.21625 * 120.00007 * 186.44931 * 3 2 1 5 5 C 1.47262 * 119.99898 * 6.45444 * 3 2 1 6 6 C 1.36772 * 126.94437 * 8.22912 * 5 3 2 7 7 N 1.34655 * 108.39935 * 179.97438 * 6 5 3 8 8 C 1.46496 * 124.84949 * 179.97438 * 7 6 5 9 9 C 1.36447 * 110.29456 * 359.97438 * 7 6 5 10 10 C 1.50707 * 125.57039 * 179.97438 * 9 7 6 11 11 O 1.42904 * 109.46542 * 30.00396 * 10 9 7 12 12 Si 1.86293 * 109.46999 * 149.99782 * 10 9 7 13 13 C 1.34483 * 108.85995 * 359.71243 * 9 7 6 14 14 C 1.46502 * 119.99723 * 180.02562 * 2 1 3 15 15 H 1.09004 * 109.46800 * 179.97438 * 14 2 1 16 16 C 1.52999 * 109.47277 * 299.99104 * 14 2 1 17 17 C 1.53000 * 109.47363 * 180.02562 * 16 14 2 18 18 C 1.52992 * 109.47288 * 300.00557 * 17 16 14 19 19 H 1.09005 * 109.47528 * 299.99965 * 18 17 16 20 20 C 1.50697 * 109.47297 * 180.02562 * 18 17 16 21 21 C 1.38238 * 119.99577 * 299.72181 * 20 18 17 22 22 C 1.38240 * 119.99796 * 179.76602 * 21 20 18 23 23 C 1.38231 * 119.99856 * 0.48816 * 22 21 20 24 24 C 1.38241 * 120.00216 * 359.78977 * 23 22 21 25 25 C 1.38230 * 119.99585 * 359.95629 * 24 23 22 26 26 C 1.53003 * 109.47215 * 59.99778 * 18 17 16 27 27 C 1.52997 * 109.47161 * 299.99741 * 26 18 17 28 28 H 1.09008 * 109.46774 * 275.86578 * 1 2 3 29 29 H 1.08996 * 109.47100 * 35.86000 * 1 2 3 30 30 H 1.08997 * 109.47571 * 155.86825 * 1 2 3 31 31 H 1.07999 * 125.79555 * 0.02562 * 6 5 3 32 32 H 1.08998 * 109.47002 * 90.02967 * 8 7 6 33 33 H 1.09004 * 109.46982 * 210.02534 * 8 7 6 34 34 H 1.09000 * 109.47398 * 330.02257 * 8 7 6 35 35 H 1.08999 * 109.47217 * 270.00246 * 10 9 7 36 36 H 0.96706 * 113.99749 * 180.02562 * 11 10 9 37 37 H 1.48497 * 110.00467 * 300.00424 * 12 10 9 38 38 H 1.48503 * 110.00068 * 61.32525 * 12 10 9 39 39 H 1.08003 * 126.83352 * 180.27108 * 13 9 7 40 40 H 1.09005 * 109.46520 * 60.00202 * 16 14 2 41 41 H 1.08998 * 109.47178 * 300.01043 * 16 14 2 42 42 H 1.09005 * 109.46426 * 60.00580 * 17 16 14 43 43 H 1.09001 * 109.46913 * 180.02562 * 17 16 14 44 44 H 1.07994 * 120.00213 * 0.02562 * 21 20 18 45 45 H 1.07995 * 119.99762 * 180.25877 * 22 21 20 46 46 H 1.07999 * 120.00114 * 179.76890 * 23 22 21 47 47 H 1.08000 * 120.00289 * 179.97438 * 24 23 22 48 48 H 1.08008 * 119.99773 * 179.97438 * 25 24 23 49 49 H 1.08994 * 109.47352 * 60.00040 * 26 18 17 50 50 H 1.09003 * 109.47221 * 180.02562 * 26 18 17 51 51 H 1.08999 * 109.47297 * 179.97438 * 27 26 18 52 52 H 1.08995 * 109.47612 * 299.99988 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3494 1.1705 -0.1183 5 6 1.4096 2.4385 0.1434 6 6 0.0837 2.5967 0.4397 7 7 -0.1884 3.9148 0.4798 8 6 -1.5051 4.4894 0.7668 9 6 0.9374 4.6388 0.2149 10 6 1.0224 6.1429 0.1711 11 8 0.0604 6.7005 1.0688 12 14 2.7315 6.6832 0.6785 13 6 1.9600 3.7911 0.0050 14 6 2.1974 -1.2688 -0.0006 15 1 3.2691 -1.0696 -0.0009 16 6 1.8280 -2.0715 1.2484 17 6 2.5934 -3.3963 1.2482 18 6 2.2243 -4.1984 -0.0013 19 1 1.1527 -4.3979 -0.0016 20 6 2.9777 -5.5035 -0.0012 21 6 4.3601 -5.5035 -0.0065 22 6 5.0513 -6.7006 -0.0015 23 6 4.3601 -7.8977 -0.0015 24 6 2.9777 -7.8978 -0.0021 25 6 2.2866 -6.7006 -0.0018 26 6 2.5939 -3.3956 -1.2503 27 6 1.8284 -2.0709 -1.2501 28 1 -0.3633 0.1050 1.0224 29 1 -0.3633 0.8328 -0.6020 30 1 -0.3634 -0.9378 -0.4201 31 1 -0.6243 1.7998 0.6129 32 1 -1.6060 4.6484 1.8403 33 1 -1.6068 5.4422 0.2472 34 1 -2.2822 3.8051 0.4262 35 1 0.8176 6.4890 -0.8419 36 1 0.0584 7.6673 1.0922 37 1 3.0230 6.2174 2.0581 38 1 3.7385 6.1359 -0.2658 39 1 2.9824 4.0538 -0.2233 40 1 0.7563 -2.2707 1.2484 41 1 2.0913 -1.5003 2.1386 42 1 3.6650 -3.1967 1.2484 43 1 2.3298 -3.9684 2.1378 44 1 4.9001 -4.5682 -0.0102 45 1 6.1312 -6.7006 -0.0014 46 1 4.9001 -8.8331 -0.0014 47 1 2.4377 -8.8331 -0.0026 48 1 1.2065 -6.7006 -0.0026 49 1 3.6654 -3.1960 -1.2501 50 1 2.3305 -3.9668 -2.1405 51 1 2.0920 -1.4988 -2.1396 52 1 0.7568 -2.2704 -1.2504 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15753748_13287730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:58:25 Heat of formation + Delta-G solvation = 23.491339 kcal Electronic energy + Delta-G solvation = -31509.522425 eV Core-core repulsion = 27441.631465 eV Total energy + Delta-G solvation = -4067.890959 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.193 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.67000 -41.25475 -40.33301 -38.69809 -37.68810 -36.37482 -33.94403 -33.14209 -31.83592 -31.80551 -31.53968 -29.39443 -28.23112 -27.40825 -26.25317 -24.59536 -23.72081 -23.65601 -22.99157 -21.64649 -20.82308 -20.45211 -20.26029 -18.32470 -18.07532 -17.85437 -17.56216 -17.05426 -16.83664 -16.28010 -16.20057 -16.01871 -15.55782 -15.38419 -15.22313 -15.13093 -14.95116 -14.72991 -14.53528 -14.31938 -14.15879 -13.97542 -13.90735 -13.74728 -13.60701 -13.31546 -13.26286 -13.23160 -13.04622 -12.81001 -12.68070 -12.51189 -12.29479 -12.15547 -12.07030 -11.83580 -11.61126 -11.40127 -11.24656 -10.99908 -10.61909 -9.89287 -9.82870 -9.59703 -9.58678 -9.30608 -5.06845 0.44235 0.49089 0.60093 0.89884 1.35662 1.61325 1.80015 2.02889 2.05470 2.35472 2.86287 3.17158 3.51908 3.61291 3.65181 3.72234 3.75320 3.85411 3.89328 4.11124 4.12448 4.14292 4.21407 4.23495 4.25708 4.30342 4.30758 4.38604 4.42088 4.42678 4.46627 4.52029 4.58323 4.59594 4.63716 4.66796 4.70819 4.73868 4.77790 4.86080 4.87735 5.02259 5.03751 5.08347 5.11893 5.16818 5.20578 5.32262 5.36488 5.42144 5.57583 5.60625 5.63289 5.74261 5.85660 6.12202 6.14266 6.33688 6.82599 7.14279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.604 5.604 3 C 0.581 3.419 4 O -0.604 6.604 5 C -0.261 4.261 6 C 0.060 3.940 7 N -0.422 5.422 8 C 0.070 3.930 9 C 0.023 3.977 10 C -0.038 4.038 11 O -0.557 6.557 12 Si 0.799 3.201 13 C -0.191 4.191 14 C 0.140 3.860 15 H 0.064 0.936 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.039 4.039 19 H 0.097 0.903 20 C -0.083 4.083 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.104 4.104 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.411 0.589 37 H -0.314 1.314 38 H -0.304 1.304 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.052 0.948 50 H 0.073 0.927 51 H 0.053 0.947 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 3.035 -0.133 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.335 5.335 3 C 0.374 3.626 4 O -0.487 6.487 5 C -0.271 4.271 6 C -0.076 4.076 7 N -0.096 5.096 8 C -0.070 4.070 9 C -0.087 4.087 10 C -0.149 4.149 11 O -0.367 6.367 12 Si 0.706 3.294 13 C -0.215 4.215 14 C 0.037 3.963 15 H 0.082 0.918 16 C -0.154 4.154 17 C -0.142 4.142 18 C -0.057 4.057 19 H 0.115 0.885 20 C -0.083 4.083 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.155 4.155 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.244 0.756 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.263 0.737 37 H -0.242 1.242 38 H -0.232 1.232 39 H 0.140 0.860 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.072 0.928 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.854 2.374 0.231 10.139 hybrid contribution 0.805 -0.576 -0.160 1.003 sum -9.049 1.798 0.071 9.227 Atomic orbital electron populations 1.22596 0.77679 1.05424 1.03236 1.47738 1.08274 1.04570 1.72872 1.17791 0.85984 0.83861 0.75014 1.90717 1.16512 1.87930 1.53517 1.20271 0.95083 0.92186 1.19533 1.23490 0.96242 0.86619 1.01257 1.43923 1.09837 1.05271 1.50527 1.22449 0.79384 1.01486 1.03638 1.20165 0.86675 0.93284 1.08561 1.24254 1.05120 0.87357 0.98152 1.86371 1.58034 1.28426 1.63918 0.95029 0.71849 0.87302 0.75190 1.21606 0.97830 0.92031 1.10058 1.21109 0.96565 0.82288 0.96336 0.91770 1.21800 1.02073 0.95309 0.96176 1.21517 0.99914 0.94901 0.97874 1.20166 1.00140 0.90713 0.94720 0.88510 1.20012 0.93678 0.95298 0.99297 1.21174 0.94422 0.98250 1.00868 1.21398 1.00675 0.92812 1.00154 1.21431 0.94988 0.98582 1.00509 1.21457 0.94580 0.98913 0.99670 1.21345 1.00772 0.91809 1.00364 1.21515 0.99914 0.94865 0.97888 1.21806 1.02010 0.95383 0.96278 0.90104 0.89355 0.88176 0.75597 0.90135 0.87975 0.87322 0.87547 0.73654 1.24239 1.23236 0.86028 0.89039 0.92720 0.92879 0.90820 0.86268 0.85326 0.84941 0.84524 0.84378 0.92874 0.90865 0.92847 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.29 7.69 127.77 0.98 0.69 16 2 N -0.60 -2.94 2.76 -826.64 -2.28 -5.22 16 3 C 0.58 8.30 7.65 86.62 0.66 8.96 16 4 O -0.60 -14.72 16.33 -4.11 -0.07 -14.78 16 5 C -0.26 -2.83 6.09 -19.04 -0.12 -2.95 16 6 C 0.06 0.09 9.25 83.92 0.78 0.87 16 7 N -0.42 -0.65 3.09 -533.24 -1.65 -2.30 16 8 C 0.07 -0.46 9.81 127.77 1.25 0.80 16 9 C 0.02 0.15 6.18 40.98 0.25 0.40 16 10 C -0.04 0.06 2.86 71.24 0.20 0.26 16 11 O -0.56 3.08 10.29 -148.98 -1.53 1.55 16 12 Si 0.80 0.68 31.22 68.60 2.14 2.82 16 13 C -0.19 -2.51 9.50 23.62 0.22 -2.29 16 14 C 0.14 0.62 2.51 44.99 0.11 0.73 16 15 H 0.06 0.79 6.92 -2.38 -0.02 0.78 16 16 C -0.12 -0.02 5.20 30.59 0.16 0.14 16 17 C -0.10 -0.04 5.02 30.59 0.15 0.11 16 18 C -0.04 0.03 2.36 -11.54 -0.03 0.01 16 19 H 0.10 -0.38 7.88 -2.38 -0.02 -0.40 16 20 C -0.08 -0.20 4.78 -19.87 -0.09 -0.29 16 21 C -0.13 -0.56 8.71 22.27 0.19 -0.36 16 22 C -0.13 -0.54 10.05 22.27 0.22 -0.31 16 23 C -0.14 -0.41 10.05 22.27 0.22 -0.19 16 24 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 25 C -0.13 -0.19 9.67 22.27 0.22 0.03 16 26 C -0.10 -0.06 5.01 30.59 0.15 0.09 16 27 C -0.12 -0.06 5.19 30.59 0.16 0.10 16 28 H 0.08 -0.76 7.29 -2.38 -0.02 -0.77 16 29 H 0.09 -0.61 5.48 -2.39 -0.01 -0.62 16 30 H 0.10 -0.96 6.44 -2.39 -0.02 -0.98 16 31 H 0.23 -1.71 4.47 -2.91 -0.01 -1.72 16 32 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.10 -0.73 6.73 -2.38 -0.02 -0.75 16 34 H 0.11 -1.32 8.13 -2.39 -0.02 -1.34 16 35 H 0.11 -0.66 7.96 -2.39 -0.02 -0.68 16 36 H 0.41 -6.51 8.74 -74.05 -0.65 -7.16 16 37 H -0.31 -3.45 7.11 99.48 0.71 -2.74 16 38 H -0.30 -2.80 6.89 99.48 0.69 -2.11 16 39 H 0.12 2.07 6.73 -2.91 -0.02 2.05 16 40 H 0.09 -0.41 7.67 -2.38 -0.02 -0.43 16 41 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.05 0.19 7.41 -2.38 -0.02 0.17 16 43 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 44 H 0.12 0.44 7.11 -2.91 -0.02 0.42 16 45 H 0.13 0.18 8.06 -2.91 -0.02 0.15 16 46 H 0.13 -0.05 8.06 -2.91 -0.02 -0.07 16 47 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 48 H 0.14 -0.38 7.95 -2.91 -0.02 -0.40 16 49 H 0.05 0.20 7.38 -2.39 -0.02 0.18 16 50 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 51 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 52 H 0.09 -0.39 6.67 -2.39 -0.02 -0.41 16 Total: 0.00 -31.36 401.15 2.84 -28.51 By element: Atomic # 1 Polarization: -17.63 SS G_CDS: 0.30 Total: -17.33 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.94 Total: 6.76 kcal Atomic # 7 Polarization: -3.59 SS G_CDS: -3.93 Total: -7.52 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -1.60 Total: -13.23 kcal Atomic # 14 Polarization: 0.68 SS G_CDS: 2.14 Total: 2.82 kcal Total: -31.36 2.84 -28.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15753748_13287730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.002 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds