Wall clock time and date at job start Sun Mar 7 2021 08:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47385 * 2 1 4 4 C 1.52997 * 109.46968 * 240.00273 * 2 1 3 5 5 O 1.45201 * 109.47220 * 120.00448 * 2 1 3 6 6 C 1.34631 * 117.00188 * 59.99715 * 5 2 1 7 7 O 1.21520 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00267 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00033 * 180.02562 * 8 6 5 10 10 H 1.08992 * 112.90684 * 336.24748 * 9 8 6 11 11 C 1.54049 * 113.61276 * 107.61836 * 9 8 6 12 12 C 1.53781 * 87.08031 * 89.07129 * 11 9 8 13 13 F 1.39903 * 113.61366 * 270.87987 * 12 11 9 14 14 C 1.52991 * 113.61611 * 139.97702 * 12 11 9 15 15 N 1.46508 * 109.47429 * 87.50116 * 14 12 11 16 16 C 1.34777 * 120.00013 * 180.02562 * 15 14 12 17 17 O 1.21281 * 120.00116 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99720 * 180.02562 * 16 15 14 19 19 C 1.50697 * 109.47196 * 179.97438 * 18 16 15 20 20 C 1.34846 * 125.89388 * 274.69601 * 19 18 16 21 21 C 1.40895 * 107.41750 * 179.88171 * 20 19 18 22 22 C 1.34854 * 107.41717 * 0.38037 * 21 20 19 23 23 C 1.50697 * 125.89311 * 179.73516 * 22 21 20 24 24 O 1.42903 * 109.46966 * 245.04082 * 23 22 21 25 25 Si 1.86305 * 109.46949 * 5.03676 * 23 22 21 26 26 N 1.36344 * 125.88677 * 95.00126 * 19 18 16 27 27 C 1.53781 * 87.08070 * 25.42738 * 12 11 9 28 28 H 1.09005 * 109.46565 * 300.00198 * 1 2 3 29 29 H 1.08996 * 109.47177 * 59.99028 * 1 2 3 30 30 H 1.09000 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47374 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47536 * 300.00135 * 3 2 1 33 33 H 1.09004 * 109.46915 * 60.00231 * 3 2 1 34 34 H 1.09001 * 109.47283 * 300.00289 * 4 2 1 35 35 H 1.09005 * 109.47057 * 59.99675 * 4 2 1 36 36 H 1.08995 * 109.47902 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00078 * 359.97438 * 8 6 5 38 38 H 1.09005 * 113.62125 * 334.52173 * 11 9 8 39 39 H 1.08996 * 113.68970 * 203.62749 * 11 9 8 40 40 H 1.08997 * 109.47550 * 207.50008 * 14 12 11 41 41 H 1.09002 * 109.47334 * 327.50277 * 14 12 11 42 42 H 0.96996 * 119.99136 * 0.02562 * 15 14 12 43 43 H 1.08993 * 109.47235 * 299.99988 * 18 16 15 44 44 H 1.09005 * 109.47230 * 60.00102 * 18 16 15 45 45 H 1.08001 * 126.29414 * 0.02562 * 20 19 18 46 46 H 1.08001 * 126.29318 * 180.16117 * 21 20 19 47 47 H 1.08997 * 109.47377 * 125.03577 * 23 22 21 48 48 H 0.96698 * 114.00198 * 59.99489 * 24 23 22 49 49 H 1.48500 * 110.00137 * 58.68246 * 25 23 22 50 50 H 1.48502 * 109.99870 * 180.02562 * 25 23 22 51 51 H 0.97003 * 125.63757 * 0.02562 * 26 19 18 52 52 H 1.09002 * 113.61445 * 89.11830 * 27 12 11 53 53 H 1.09002 * 113.61408 * 219.93560 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6740 -4.0670 2.5828 10 1 0.7607 -4.3181 2.0436 11 6 2.8255 -5.0630 2.3476 12 6 3.1498 -4.9202 3.8441 13 9 4.0423 -3.8807 4.1274 14 6 3.5390 -6.2388 4.5153 15 7 4.9805 -6.4551 4.3679 16 6 5.5523 -7.5609 4.8844 17 8 4.8736 -8.3767 5.4716 18 6 7.0351 -7.7830 4.7332 19 6 7.4184 -9.0819 5.3943 20 6 7.7088 -9.2486 6.7006 21 6 8.0095 -10.6112 6.8952 22 6 7.8998 -11.2237 5.6988 23 6 8.1376 -12.6874 5.4304 24 8 9.2680 -12.8361 4.5689 25 14 8.4626 -13.5689 7.0392 26 7 7.5372 -10.2900 4.7737 27 6 1.6742 -4.5377 4.0469 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2073 -2.1392 36 1 3.1299 -0.7209 -1.2496 37 1 2.6269 -2.2367 3.0832 38 1 3.6079 -4.6793 1.6927 39 1 2.4904 -6.0614 2.0669 40 1 3.2845 -6.1964 5.5743 41 1 2.9984 -7.0598 4.0443 42 1 5.5232 -5.8024 3.8986 43 1 7.2902 -7.8248 3.6744 44 1 7.5755 -6.9623 5.2051 45 1 7.7083 -8.4795 7.4588 46 1 8.2818 -11.0787 7.8300 47 1 7.2573 -13.1169 4.9522 48 1 10.0888 -12.4754 4.9312 49 1 7.3075 -13.3949 7.9561 50 1 8.6994 -15.0133 6.7881 51 1 7.3889 -10.4576 3.8298 52 1 1.0230 -5.3922 4.2310 53 1 1.5270 -3.7309 4.7650 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15774724_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:24:52 Heat of formation + Delta-G solvation = -126.923830 kcal Electronic energy + Delta-G solvation = -35326.132619 eV Core-core repulsion = 30308.615700 eV Total energy + Delta-G solvation = -5017.516919 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.194 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -48.93566 -42.33157 -41.91594 -40.63057 -39.84929 -37.90821 -37.69106 -35.92556 -35.26784 -33.93666 -33.12592 -31.92883 -30.03272 -28.45310 -28.39599 -28.32674 -27.10256 -25.31467 -24.46126 -23.03951 -21.95606 -21.35862 -21.23193 -21.08449 -20.59762 -19.42834 -18.99281 -18.35413 -17.68550 -17.59318 -17.27710 -17.06586 -16.84965 -16.55582 -16.46986 -16.19056 -16.10290 -15.69325 -15.55133 -15.40296 -15.26719 -14.80948 -14.64261 -14.54902 -14.50244 -14.25221 -14.10142 -13.86578 -13.83510 -13.76351 -13.43420 -13.37057 -13.18276 -13.11375 -12.94271 -12.90115 -12.82202 -12.73246 -12.47439 -12.34701 -12.11529 -11.99976 -11.69568 -11.43558 -11.39973 -11.17538 -11.03956 -10.63597 -10.32006 -10.20190 -9.79726 -8.96915 -4.96187 1.06341 1.10210 1.26703 1.56590 1.65541 1.69978 1.84599 1.94810 2.22276 2.49864 2.97101 3.01172 3.05791 3.20965 3.51597 3.53024 3.63125 3.66715 3.70984 3.76774 3.79895 3.91406 4.01653 4.17952 4.31366 4.34638 4.38043 4.46276 4.48697 4.56550 4.58705 4.59300 4.59749 4.62111 4.73853 4.75724 4.79345 4.79914 4.84224 4.84822 4.85076 4.88751 5.10815 5.24225 5.25523 5.25704 5.29166 5.29931 5.38364 5.54800 5.99954 6.13323 6.28820 6.40795 6.65708 6.70925 7.16381 7.25720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.648 3.352 7 O -0.590 6.590 8 N -0.686 5.686 9 C 0.129 3.871 10 H 0.111 0.889 11 C -0.160 4.160 12 C 0.086 3.914 13 F -0.191 7.191 14 C 0.114 3.886 15 N -0.719 5.719 16 C 0.513 3.487 17 O -0.575 6.575 18 C -0.067 4.067 19 C 0.032 3.968 20 C -0.199 4.199 21 C -0.201 4.201 22 C -0.022 4.022 23 C -0.052 4.052 24 O -0.558 6.558 25 Si 0.809 3.191 26 N -0.537 5.537 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.416 0.584 43 H 0.128 0.872 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.154 0.846 47 H 0.100 0.900 48 H 0.397 0.603 49 H -0.295 1.295 50 H -0.292 1.292 51 H 0.418 0.582 52 H 0.142 0.858 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.349 4.845 -0.794 5.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.346 5.346 9 C 0.025 3.975 10 H 0.129 0.871 11 C -0.198 4.198 12 C 0.067 3.933 13 F -0.171 7.171 14 C -0.011 4.011 15 N -0.373 5.373 16 C 0.300 3.700 17 O -0.453 6.453 18 C -0.107 4.107 19 C -0.082 4.082 20 C -0.224 4.224 21 C -0.225 4.225 22 C -0.135 4.135 23 C -0.162 4.162 24 O -0.366 6.366 25 Si 0.713 3.287 26 N -0.133 5.133 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.253 0.747 43 H 0.146 0.854 44 H 0.161 0.839 45 H 0.159 0.841 46 H 0.171 0.829 47 H 0.118 0.882 48 H 0.248 0.752 49 H -0.222 1.222 50 H -0.220 1.220 51 H 0.256 0.744 52 H 0.160 0.840 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.817 3.203 -0.831 3.775 hybrid contribution -0.232 0.666 -0.771 1.045 sum 1.585 3.869 -1.602 4.477 Atomic orbital electron populations 1.22482 0.93962 1.03769 1.03556 1.22368 0.94511 0.92557 0.81445 1.21900 1.02475 0.90913 1.04274 1.22473 1.01638 1.02279 0.97311 1.86319 1.71491 1.23247 1.47386 1.18273 0.78491 0.80751 0.82330 1.90911 1.42077 1.71018 1.44038 1.44440 1.54971 1.11866 1.23300 1.21928 0.99118 0.78297 0.98194 0.87146 1.24252 0.99132 1.02171 0.94289 1.22173 0.89410 0.84346 0.97340 1.92850 1.69885 1.59796 1.94601 1.21783 0.82030 0.95535 1.01713 1.45771 1.09231 1.23826 1.58451 1.20994 0.90867 0.80612 0.77495 1.90764 1.65730 1.45795 1.43048 1.20233 0.91368 0.94703 1.04434 1.19892 1.07980 0.87031 0.93313 1.20859 1.09112 0.97192 0.95221 1.20929 1.09746 0.94779 0.97093 1.20991 1.10081 0.92371 0.90072 1.24914 0.91344 0.92762 1.07183 1.86442 1.19663 1.83628 1.46846 0.93071 0.86374 0.75724 0.73500 1.41893 1.53689 1.06978 1.10724 1.24015 0.94067 1.04381 0.95902 0.91961 0.89417 0.91663 0.91184 0.88250 0.91208 0.91684 0.89432 0.91947 0.74812 0.90046 0.85226 0.90862 0.88877 0.74734 0.85394 0.83950 0.84091 0.82859 0.88215 0.75242 1.22180 1.21971 0.74431 0.84003 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 2 C 0.13 0.29 1.13 -10.80 -0.01 0.28 16 3 C -0.14 0.35 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 5 O -0.37 -1.84 9.94 -55.40 -0.55 -2.39 16 6 C 0.65 3.66 8.06 129.79 1.05 4.71 16 7 O -0.59 -6.10 11.48 19.78 0.23 -5.87 16 8 N -0.69 0.23 5.19 -567.17 -2.94 -2.72 16 9 C 0.13 -0.49 4.34 45.61 0.20 -0.30 16 10 H 0.11 -0.17 7.46 -2.39 -0.02 -0.19 16 11 C -0.16 1.02 7.33 31.21 0.23 1.25 16 12 C 0.09 -0.57 1.73 -10.27 -0.02 -0.59 16 13 F -0.19 0.67 15.50 44.97 0.70 1.36 16 14 C 0.11 -0.51 5.43 86.37 0.47 -0.05 16 15 N -0.72 3.18 5.45 -463.06 -2.52 0.66 16 16 C 0.51 0.44 7.82 87.66 0.69 1.12 16 17 O -0.57 -6.41 16.03 -3.03 -0.05 -6.46 16 18 C -0.07 0.31 6.24 29.10 0.18 0.50 16 19 C 0.03 0.08 5.66 41.08 0.23 0.31 16 20 C -0.20 -0.95 10.76 22.14 0.24 -0.71 16 21 C -0.20 -0.84 9.37 22.14 0.21 -0.63 16 22 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 23 C -0.05 -0.08 3.08 71.24 0.22 0.14 16 24 O -0.56 -0.42 12.88 -148.98 -1.92 -2.34 16 25 Si 0.81 -0.21 30.60 68.60 2.10 1.88 16 26 N -0.54 -1.31 6.07 -171.12 -1.04 -2.35 16 27 C -0.15 1.18 7.27 31.12 0.23 1.40 16 28 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 29 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 0.49 5.88 -2.39 -0.01 0.47 16 31 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.07 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 35 H 0.09 -0.09 8.14 -2.38 -0.02 -0.11 16 36 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 37 H 0.41 -1.04 7.88 -92.71 -0.73 -1.77 16 38 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 39 H 0.13 -1.18 7.89 -2.39 -0.02 -1.20 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.09 -0.44 7.84 -2.39 -0.02 -0.46 16 42 H 0.42 -3.62 8.03 -92.71 -0.74 -4.36 16 43 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 44 H 0.14 -1.34 8.14 -2.38 -0.02 -1.36 16 45 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.15 0.05 6.24 -2.91 -0.02 0.03 16 47 H 0.10 0.31 7.96 -2.39 -0.02 0.29 16 48 H 0.40 -2.80 8.70 -74.06 -0.64 -3.44 16 49 H -0.29 -1.87 7.11 99.48 0.71 -1.16 16 50 H -0.29 -1.67 7.11 99.48 0.71 -0.97 16 51 H 0.42 -0.40 8.96 -92.71 -0.83 -1.23 16 52 H 0.14 -1.67 8.10 -2.39 -0.02 -1.69 16 53 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: 0.00 -27.24 434.28 -1.92 -29.17 By element: Atomic # 1 Polarization: -17.96 SS G_CDS: -1.93 Total: -19.89 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.01 Total: 8.95 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -6.51 Total: -4.41 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -2.29 Total: -17.06 kcal Atomic # 9 Polarization: 0.67 SS G_CDS: 0.70 Total: 1.36 kcal Atomic # 14 Polarization: -0.21 SS G_CDS: 2.10 Total: 1.88 kcal Total: -27.24 -1.92 -29.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15774724_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.758 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds