Wall clock time and date at job start Sun Mar 7 2021 08:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33823 * 122.45133 * 2 1 4 4 C 1.50706 * 124.51781 * 359.95306 * 3 2 1 5 5 O 1.42896 * 109.47388 * 329.99851 * 4 3 2 6 6 Si 1.86302 * 109.46623 * 210.00155 * 4 3 2 7 7 S 1.70608 * 110.95512 * 179.97438 * 3 2 1 8 8 C 1.75835 * 91.56423 * 359.97438 * 7 3 2 9 9 C 1.46582 * 125.45538 * 179.97438 * 8 7 3 10 10 O 1.21705 * 119.99495 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00322 * 0.02857 * 9 8 7 12 12 C 1.46504 * 120.00350 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47385 * 180.02562 * 12 11 9 14 14 F 1.39897 * 112.85212 * 48.80307 * 13 12 11 15 15 C 1.53773 * 113.61474 * 180.02562 * 13 12 11 16 16 C 1.53778 * 87.08435 * 139.97761 * 15 13 12 17 17 H 1.09003 * 113.61621 * 219.93178 * 16 15 13 18 18 N 1.46504 * 113.61273 * 89.11763 * 16 15 13 19 19 C 1.34771 * 120.00294 * 155.00323 * 18 16 15 20 20 O 1.21515 * 120.00158 * 359.97438 * 19 18 16 21 21 O 1.34637 * 120.00399 * 179.97438 * 19 18 16 22 22 C 1.45194 * 117.00311 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46979 * 60.00565 * 22 21 19 24 24 C 1.52997 * 109.47240 * 300.00529 * 22 21 19 25 25 C 1.52999 * 109.47457 * 180.02562 * 22 21 19 26 26 C 1.53783 * 87.08052 * 334.56700 * 16 15 13 27 27 C 1.36648 * 109.08380 * 0.26583 * 8 7 3 28 28 H 1.09000 * 109.47274 * 89.99626 * 1 2 3 29 29 H 1.08997 * 109.47175 * 210.00140 * 1 2 3 30 30 H 1.09011 * 109.46903 * 329.99959 * 1 2 3 31 31 H 1.08997 * 109.46627 * 90.00566 * 4 3 2 32 32 H 0.96698 * 114.00008 * 179.97438 * 5 4 3 33 33 H 1.48501 * 110.00223 * 60.00410 * 6 4 3 34 34 H 1.48509 * 109.99573 * 181.32393 * 6 4 3 35 35 H 0.97005 * 120.00127 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46652 * 59.99863 * 12 11 9 37 37 H 1.09003 * 109.47134 * 300.00527 * 12 11 9 38 38 H 1.09010 * 113.61716 * 25.43297 * 15 13 12 39 39 H 1.08999 * 113.61679 * 254.52752 * 15 13 12 40 40 H 0.97003 * 119.99776 * 334.99888 * 18 16 15 41 41 H 1.09001 * 109.47002 * 299.99655 * 23 22 21 42 42 H 1.08993 * 109.46955 * 60.00092 * 23 22 21 43 43 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47140 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.47230 * 299.99118 * 24 22 21 46 46 H 1.09001 * 109.47375 * 59.99957 * 24 22 21 47 47 H 1.09001 * 109.47362 * 300.00827 * 25 22 21 48 48 H 1.09002 * 109.46716 * 60.00187 * 25 22 21 49 49 H 1.09000 * 109.47486 * 180.02562 * 25 22 21 50 50 H 1.09002 * 113.61239 * 139.97841 * 26 16 15 51 51 H 1.08992 * 113.61243 * 270.88152 * 26 16 15 52 52 H 1.07991 * 123.35188 * 179.73104 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1293 0.0000 4 6 1.6355 2.5162 -0.0010 5 8 0.3758 2.4979 -0.6755 6 14 2.7931 3.6823 -0.8790 7 16 3.8969 0.7892 0.0007 8 6 3.5936 -0.9428 0.0018 9 6 4.6231 -1.9862 0.0023 10 8 4.3001 -3.1596 0.0026 11 7 5.9273 -1.6463 0.0024 12 6 6.9562 -2.6892 0.0035 13 6 8.3412 -2.0393 0.0041 14 9 8.4717 -1.0394 0.9739 15 6 9.4974 -3.0531 0.0046 16 6 10.2144 -2.1172 -0.9827 17 1 10.7412 -2.6432 -1.7789 18 7 11.0406 -1.0981 -0.3306 19 6 12.0844 -0.5549 -0.9879 20 8 12.3405 -0.9108 -2.1211 21 8 12.8433 0.3820 -0.3888 22 6 13.9511 0.9225 -1.1562 23 6 13.4164 1.5797 -2.4302 24 6 14.9121 -0.2077 -1.5300 25 6 14.6925 1.9649 -0.3167 26 6 8.8213 -1.6111 -1.3927 27 6 2.2446 -1.1601 -0.0044 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.4927 2.8510 1.0264 32 1 -0.0623 3.3591 -0.7140 33 1 2.9960 3.2368 -2.2810 34 1 2.2381 5.0596 -0.8590 35 1 6.1847 -0.7110 0.0019 36 1 6.8458 -3.3093 -0.8861 37 1 6.8452 -3.3082 0.8938 38 1 9.2313 -4.0192 -0.4245 39 1 10.0010 -3.1407 0.9673 40 1 10.8363 -0.8142 0.5741 41 1 12.8885 0.8368 -3.0282 42 1 12.7318 2.3849 -2.1639 43 1 14.2479 1.9859 -3.0061 44 1 15.7435 0.1980 -2.1064 45 1 15.2932 -0.6758 -0.6224 46 1 14.3843 -0.9507 -2.1280 47 1 14.0080 2.7702 -0.0499 48 1 15.0734 1.4964 0.5907 49 1 15.5238 2.3711 -0.8929 50 1 8.7791 -0.5345 -1.5580 51 1 8.3704 -2.1829 -2.2037 52 1 1.8019 -2.1451 -0.0094 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15774724_6739946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:09 Heat of formation + Delta-G solvation = -134.002122 kcal Electronic energy + Delta-G solvation = -35698.855802 eV Core-core repulsion = 30707.383963 eV Total energy + Delta-G solvation = -4991.471839 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.155 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.90563 -41.87927 -40.99974 -39.97063 -39.62531 -37.88266 -37.52527 -36.00076 -35.25402 -33.88977 -32.41897 -30.23810 -29.42818 -28.36463 -28.30007 -27.08359 -26.32538 -24.74291 -24.02732 -22.95347 -21.89787 -21.18924 -20.69271 -20.09237 -19.37907 -19.22705 -18.60420 -17.70296 -17.62557 -17.26501 -17.14760 -17.00742 -16.60665 -16.42407 -16.29318 -16.13651 -15.94900 -15.51296 -15.36320 -15.22672 -14.87653 -14.73428 -14.52103 -14.49503 -14.39758 -14.15419 -13.77709 -13.70856 -13.34010 -13.25608 -13.15952 -13.13462 -13.08137 -12.96026 -12.91011 -12.86839 -12.78458 -12.59474 -12.44701 -12.31223 -12.14954 -12.02345 -11.72077 -11.40117 -11.38425 -11.27153 -11.13632 -10.83573 -10.38194 -10.25714 -9.63725 -9.38105 -5.14480 -0.68187 0.26055 0.66427 1.03489 1.10454 1.31901 1.50250 1.69687 1.86811 1.86933 2.03349 2.99832 3.05117 3.08065 3.19800 3.21735 3.57428 3.61072 3.64907 3.70999 3.74216 3.79963 3.94532 4.10608 4.31225 4.31484 4.37216 4.40164 4.49199 4.55929 4.58371 4.61637 4.62586 4.63515 4.76959 4.79623 4.82445 4.83825 4.86124 4.86759 4.87903 4.89241 4.91482 4.98675 5.11975 5.15994 5.27396 5.30363 5.37883 5.41800 5.43737 5.58581 6.21409 6.33373 6.53880 6.92524 7.30037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.039 4.039 5 O -0.541 6.541 6 Si 0.727 3.273 7 S 0.261 5.739 8 C -0.289 4.289 9 C 0.595 3.405 10 O -0.566 6.566 11 N -0.715 5.715 12 C 0.112 3.888 13 C 0.081 3.919 14 F -0.191 7.191 15 C -0.141 4.141 16 C 0.131 3.869 17 H 0.112 0.888 18 N -0.686 5.686 19 C 0.648 3.352 20 O -0.590 6.590 21 O -0.370 6.370 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.180 4.180 25 C -0.138 4.138 26 C -0.163 4.163 27 C -0.057 4.057 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.398 0.602 33 H -0.292 1.292 34 H -0.256 1.256 35 H 0.410 0.590 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.099 0.901 40 H 0.415 0.585 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.098 0.902 50 H 0.082 0.918 51 H 0.131 0.869 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 4.988 2.860 6.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.323 4.323 4 C -0.150 4.150 5 O -0.351 6.351 6 Si 0.628 3.372 7 S 0.529 5.471 8 C -0.409 4.409 9 C 0.382 3.618 10 O -0.447 6.447 11 N -0.367 5.367 12 C -0.012 4.012 13 C 0.063 3.937 14 F -0.171 7.171 15 C -0.179 4.179 16 C 0.026 3.974 17 H 0.130 0.870 18 N -0.346 5.346 19 C 0.402 3.598 20 O -0.480 6.480 21 O -0.284 6.284 22 C 0.091 3.909 23 C -0.237 4.237 24 C -0.237 4.237 25 C -0.195 4.195 26 C -0.202 4.202 27 C -0.091 4.091 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.250 0.750 33 H -0.218 1.218 34 H -0.180 1.180 35 H 0.246 0.754 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.252 0.748 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.100 0.900 51 H 0.150 0.850 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.880 4.929 1.616 6.478 hybrid contribution -2.623 -0.056 0.106 2.626 sum 1.257 4.873 1.722 5.319 Atomic orbital electron populations 1.20472 0.88296 1.02867 1.02373 1.18803 0.99058 0.90682 1.03747 1.23719 0.99298 0.99346 1.09949 1.24223 0.91504 0.96295 1.02942 1.86647 1.31944 1.37240 1.79316 0.94808 0.84633 0.76888 0.80848 1.82386 1.00824 0.96076 1.67773 1.24598 0.97699 0.98404 1.20212 1.17041 0.82169 0.87029 0.75578 1.90835 1.82257 1.19696 1.51865 1.45627 1.04730 1.11190 1.75157 1.21956 0.83831 0.90337 1.05034 1.22241 0.95084 0.88217 0.88201 1.92856 1.96695 1.62755 1.64840 1.24005 0.93126 0.98949 1.01867 1.21877 0.90427 0.88382 0.96708 0.86994 1.44448 1.28528 1.42332 1.19281 1.18270 0.80059 0.78452 0.83056 1.90910 1.72901 1.65330 1.18875 1.86318 1.42257 1.52328 1.47536 1.22362 0.83080 0.93883 0.91552 1.22473 1.02885 1.01191 0.97153 1.22478 0.99721 0.98917 1.02629 1.21897 1.00288 0.97006 1.00353 1.24241 0.95627 1.04142 0.96190 1.20759 0.91343 1.00215 0.96790 0.91763 0.91811 0.89927 0.86843 0.75005 1.21834 1.18047 0.75405 0.87836 0.90001 0.83659 0.88250 0.74787 0.91658 0.91917 0.89501 0.89489 0.91965 0.91643 0.91164 0.91222 0.88306 0.89965 0.85043 0.83479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 8.70 71.24 0.62 0.43 16 2 C -0.11 -0.47 5.75 -21.05 -0.12 -0.59 16 3 C -0.20 -0.25 5.57 24.68 0.14 -0.11 16 4 C -0.04 0.13 2.75 71.24 0.20 0.32 16 5 O -0.54 1.09 9.81 -148.98 -1.46 -0.37 16 6 Si 0.73 -2.72 31.31 68.60 2.15 -0.57 16 7 S 0.26 -0.37 19.79 -56.49 -1.12 -1.49 16 8 C -0.29 -1.38 6.45 24.08 0.16 -1.22 16 9 C 0.59 3.87 7.78 86.42 0.67 4.55 16 10 O -0.57 -7.82 16.84 -4.36 -0.07 -7.90 16 11 N -0.72 0.07 5.46 -467.17 -2.55 -2.48 16 12 C 0.11 -0.37 5.36 86.38 0.46 0.09 16 13 C 0.08 -0.48 1.66 -10.27 -0.02 -0.49 16 14 F -0.19 0.48 15.72 44.97 0.71 1.19 16 15 C -0.14 1.19 7.28 31.12 0.23 1.41 16 16 C 0.13 -0.52 4.32 45.52 0.20 -0.32 16 17 H 0.11 -0.21 7.46 -2.39 -0.02 -0.23 16 18 N -0.69 0.32 5.19 -567.60 -2.95 -2.63 16 19 C 0.65 3.56 8.06 129.79 1.05 4.61 16 20 O -0.59 -5.99 11.48 19.79 0.23 -5.77 16 21 O -0.37 -1.79 9.94 -55.46 -0.55 -2.34 16 22 C 0.13 0.28 1.13 -10.79 -0.01 0.26 16 23 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 24 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 25 C -0.14 0.36 8.85 71.98 0.64 1.00 16 26 C -0.16 0.96 7.33 31.12 0.23 1.19 16 27 C -0.06 -0.35 9.80 21.72 0.21 -0.13 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.06 0.08 8.13 -2.39 -0.02 0.06 16 30 H 0.08 0.09 6.42 -2.38 -0.02 0.08 16 31 H 0.11 -0.91 7.96 -2.39 -0.02 -0.93 16 32 H 0.40 -4.04 8.74 -74.06 -0.65 -4.69 16 33 H -0.29 -1.36 7.11 99.48 0.71 -0.66 16 34 H -0.26 0.31 7.11 99.48 0.71 1.02 16 35 H 0.41 -1.39 7.30 -92.70 -0.68 -2.06 16 36 H 0.10 -0.48 7.95 -2.39 -0.02 -0.50 16 37 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.15 -1.82 8.10 -2.38 -0.02 -1.84 16 39 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H 0.41 -1.10 7.89 -92.71 -0.73 -1.83 16 41 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 42 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 47 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 50 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 51 H 0.13 -1.14 7.96 -2.39 -0.02 -1.16 16 52 H 0.15 0.97 8.06 -2.92 -0.02 0.95 16 Total: 0.00 -23.25 434.58 -0.81 -24.06 By element: Atomic # 1 Polarization: -12.04 SS G_CDS: -1.04 Total: -13.07 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.85 Total: 11.36 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -5.50 Total: -5.11 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.86 Total: -16.38 kcal Atomic # 9 Polarization: 0.48 SS G_CDS: 0.71 Total: 1.19 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.15 Total: -0.57 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.12 Total: -1.49 kcal Total: -23.25 -0.81 -24.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15774724_6739946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.939 kcal (2) G-P(sol) polarization free energy of solvation -23.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds