Wall clock time and date at job start Sun Mar 7 2021 08:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36780 * 125.79661 * 2 1 4 4 C 1.47257 * 126.94161 * 0.02562 * 3 2 1 5 5 O 1.21628 * 120.00388 * 0.02562 * 4 3 2 6 6 N 1.34786 * 119.99544 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99362 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46483 * 180.02562 * 7 6 4 9 9 F 1.39890 * 112.85293 * 48.80258 * 8 7 6 10 10 C 1.53781 * 113.61246 * 180.02562 * 8 7 6 11 11 C 1.53770 * 87.08441 * 139.97703 * 10 8 7 12 12 H 1.09002 * 113.62047 * 220.01374 * 11 10 8 13 13 N 1.46504 * 113.61719 * 89.11076 * 11 10 8 14 14 C 1.34777 * 120.00056 * 154.99623 * 13 11 10 15 15 O 1.21499 * 120.00326 * 0.02562 * 14 13 11 16 16 O 1.34640 * 119.99525 * 180.02562 * 14 13 11 17 17 C 1.45200 * 116.99575 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47114 * 60.00784 * 17 16 14 19 19 C 1.53004 * 109.47132 * 180.02562 * 17 16 14 20 20 C 1.52995 * 109.47633 * 300.00473 * 17 16 14 21 21 C 1.53784 * 87.08303 * 334.56640 * 11 10 8 22 22 C 1.46688 * 106.11263 * 179.97438 * 3 2 1 23 23 C 1.34491 * 106.33063 * 359.97438 * 22 3 2 24 24 C 1.50699 * 125.56761 * 179.97438 * 23 22 3 25 25 O 1.42903 * 109.47152 * 245.02629 * 24 23 22 26 26 Si 1.86305 * 109.47184 * 5.02101 * 24 23 22 27 27 N 1.34658 * 125.80749 * 180.26926 * 2 1 3 28 28 H 1.08999 * 109.46925 * 90.00276 * 1 2 3 29 29 H 1.09006 * 109.47089 * 209.99891 * 1 2 3 30 30 H 1.09001 * 109.47513 * 330.00393 * 1 2 3 31 31 H 0.96995 * 119.99765 * 0.02562 * 6 4 3 32 32 H 1.08994 * 109.47298 * 299.99697 * 7 6 4 33 33 H 1.08998 * 109.46847 * 60.00415 * 7 6 4 34 34 H 1.09002 * 113.61166 * 254.53032 * 10 8 7 35 35 H 1.09004 * 113.61726 * 25.34244 * 10 8 7 36 36 H 0.97008 * 119.99950 * 335.00729 * 13 11 10 37 37 H 1.08998 * 109.47515 * 59.99490 * 18 17 16 38 38 H 1.08998 * 109.47004 * 180.02562 * 18 17 16 39 39 H 1.08998 * 109.46577 * 299.99576 * 18 17 16 40 40 H 1.08997 * 109.47094 * 60.00103 * 19 17 16 41 41 H 1.08999 * 109.47331 * 180.02562 * 19 17 16 42 42 H 1.09001 * 109.46997 * 300.00698 * 19 17 16 43 43 H 1.08998 * 109.47231 * 59.99705 * 20 17 16 44 44 H 1.08998 * 109.47849 * 180.02562 * 20 17 16 45 45 H 1.09002 * 109.47182 * 300.00257 * 20 17 16 46 46 H 1.08994 * 113.61121 * 270.88572 * 21 11 10 47 47 H 1.08999 * 113.61567 * 139.98077 * 21 11 10 48 48 H 1.07995 * 126.83567 * 180.02562 * 22 3 2 49 49 H 1.08997 * 109.47198 * 125.02307 * 24 23 22 50 50 H 0.96700 * 114.00311 * 180.02562 * 25 24 23 51 51 H 1.48499 * 109.99670 * 178.68093 * 26 24 23 52 52 H 1.48497 * 110.00233 * 300.00062 * 26 24 23 53 53 H 0.97003 * 124.84509 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1094 0.0000 4 6 1.8700 2.5157 0.0005 5 8 0.6837 2.7839 0.0015 6 7 2.7848 3.5055 -0.0001 7 6 2.3501 4.9046 -0.0001 8 6 3.5764 5.8196 -0.0015 9 9 4.5187 5.4637 -0.9722 10 6 3.2274 7.3173 -0.0010 11 6 4.3916 7.5079 0.9853 12 1 4.1764 8.2191 1.7828 13 7 5.6794 7.7561 0.3323 14 6 6.6510 8.4204 0.9889 15 8 6.4592 8.8129 2.1226 16 8 7.8343 8.6489 0.3885 17 6 8.8343 9.3697 1.1557 18 6 9.1635 8.5862 2.4279 19 6 10.1020 9.5335 0.3147 20 6 8.2913 10.7495 1.5327 21 6 4.1815 6.0406 1.3949 22 6 3.6882 0.6153 0.0006 23 6 3.6095 -0.7273 0.0015 24 6 4.7820 -1.6740 0.0019 25 8 4.7949 -2.4167 -1.2190 26 14 6.3644 -0.7028 0.1546 27 7 2.2948 -1.0920 -0.0051 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.7309 3.2916 -0.0012 32 1 1.7512 5.0989 -0.8898 33 1 1.7520 5.0992 0.8901 34 1 3.3867 7.8030 -0.9637 35 1 2.2497 7.5377 0.4276 36 1 5.8327 7.4426 -0.5729 37 1 9.5505 7.6032 2.1595 38 1 9.9139 9.1276 3.0041 39 1 8.2603 8.4700 3.0269 40 1 9.8672 10.0918 -0.5915 41 1 10.8529 10.0742 0.8908 42 1 10.4890 8.5506 0.0458 43 1 7.3880 10.6333 2.1316 44 1 9.0421 11.2908 2.1082 45 1 8.0567 11.3077 0.6263 46 1 3.4654 5.9122 2.2064 47 1 5.1111 5.4957 1.5592 48 1 4.5889 1.2111 0.0012 49 1 4.6943 -2.3606 0.8439 50 1 5.5244 -3.0477 -1.2878 51 1 7.5263 -1.6270 0.1881 52 1 6.4958 0.2371 -0.9876 53 1 1.9734 -2.0073 -0.0091 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15774724_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:27:35 Heat of formation + Delta-G solvation = -129.242311 kcal Electronic energy + Delta-G solvation = -36233.834684 eV Core-core repulsion = 31216.217228 eV Total energy + Delta-G solvation = -5017.617455 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.194 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -48.87298 -42.46226 -41.87423 -40.33493 -39.71470 -37.90347 -37.82256 -35.85646 -35.22441 -33.86095 -32.99063 -32.24267 -29.44526 -28.71292 -28.36071 -28.30419 -27.03567 -25.59762 -24.59631 -23.30982 -22.65566 -21.45514 -21.17862 -20.99304 -20.33719 -19.33935 -18.65766 -18.44318 -17.70064 -17.53561 -17.24194 -17.13114 -16.87671 -16.46056 -16.36950 -16.04284 -15.91659 -15.68825 -15.50573 -15.36689 -15.23913 -15.07921 -14.59519 -14.50553 -14.41057 -14.33214 -13.87519 -13.83603 -13.71538 -13.57065 -13.47414 -13.34203 -13.14194 -13.04725 -13.01437 -12.90436 -12.87074 -12.76410 -12.46156 -12.43356 -12.31017 -12.00769 -11.62553 -11.39907 -11.31346 -11.13150 -10.95410 -10.63191 -10.26430 -10.19811 -9.86492 -9.19426 -4.89993 0.67955 1.09826 1.11185 1.26417 1.61339 1.70332 1.92976 2.06153 2.42209 2.49027 3.03657 3.06389 3.15858 3.26064 3.29417 3.60346 3.69921 3.74192 3.74795 3.80015 3.87599 3.94473 4.02654 4.16303 4.33416 4.38192 4.40524 4.47555 4.51927 4.61921 4.63092 4.64558 4.67410 4.68525 4.71157 4.76892 4.80333 4.85260 4.87661 4.89803 4.92169 4.93957 4.97616 5.13574 5.17144 5.27757 5.30445 5.40985 5.45219 5.59017 5.64088 5.84695 6.33349 6.41495 6.51907 6.57042 7.28419 7.30089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.114 3.886 3 C -0.261 4.261 4 C 0.592 3.408 5 O -0.581 6.581 6 N -0.718 5.718 7 C 0.116 3.884 8 C 0.080 3.920 9 F -0.195 7.195 10 C -0.143 4.143 11 C 0.130 3.870 12 H 0.113 0.887 13 N -0.688 5.688 14 C 0.648 3.352 15 O -0.588 6.588 16 O -0.372 6.372 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.139 4.139 20 C -0.180 4.180 21 C -0.159 4.159 22 C -0.162 4.162 23 C 0.026 3.974 24 C -0.062 4.062 25 O -0.563 6.563 26 Si 0.781 3.219 27 N -0.530 5.530 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.146 0.854 36 H 0.414 0.586 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.133 0.867 47 H 0.081 0.919 48 H 0.163 0.837 49 H 0.101 0.899 50 H 0.399 0.601 51 H -0.280 1.280 52 H -0.296 1.296 53 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -2.268 2.491 4.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.006 4.006 3 C -0.270 4.270 4 C 0.382 3.618 5 O -0.463 6.463 6 N -0.370 5.370 7 C -0.008 4.008 8 C 0.061 3.939 9 F -0.176 7.176 10 C -0.181 4.181 11 C 0.026 3.974 12 H 0.131 0.869 13 N -0.347 5.347 14 C 0.402 3.598 15 O -0.479 6.479 16 O -0.286 6.286 17 C 0.091 3.909 18 C -0.237 4.237 19 C -0.196 4.196 20 C -0.237 4.237 21 C -0.198 4.198 22 C -0.185 4.185 23 C -0.084 4.084 24 C -0.170 4.170 25 O -0.373 6.373 26 Si 0.684 3.316 27 N -0.126 5.126 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.164 0.836 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.152 0.848 47 H 0.100 0.900 48 H 0.181 0.819 49 H 0.118 0.882 50 H 0.250 0.750 51 H -0.206 1.206 52 H -0.223 1.223 53 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.067 -1.436 2.549 3.582 hybrid contribution 0.563 -1.758 -1.386 2.308 sum 2.630 -3.193 1.163 4.297 Atomic orbital electron populations 1.20595 0.85943 1.04775 1.03804 1.20637 0.94443 0.85626 0.99923 1.20071 0.93648 0.91929 1.21398 1.17447 0.84899 0.84662 0.74771 1.90733 1.17759 1.84873 1.52889 1.45547 1.10269 1.05488 1.75661 1.21819 0.95216 0.79412 1.04374 1.22273 0.87202 0.96207 0.88172 1.92844 1.66684 1.93057 1.64992 1.24007 1.00489 0.91893 1.01719 1.21893 0.80948 0.97947 0.96639 0.86887 1.44479 1.12437 1.58545 1.19231 1.18252 0.80751 0.77721 0.83074 1.90901 1.81857 1.56360 1.18744 1.86322 1.22819 1.71940 1.47548 1.22368 0.86062 0.90909 0.91583 1.22471 1.03439 1.00655 0.97116 1.21900 0.93745 1.03585 1.00347 1.22477 1.03330 0.95304 1.02613 1.24208 1.03289 0.96138 0.96123 1.21927 0.96095 0.92881 1.07640 1.19813 0.84191 0.93994 1.10399 1.24688 1.04208 0.98606 0.89533 1.86544 1.54734 1.57297 1.38738 0.93648 0.71364 0.79403 0.87142 1.41571 1.05299 1.09076 1.56639 0.90236 0.89259 0.89448 0.75462 0.90974 0.88062 0.88638 0.83629 0.74948 0.91958 0.89426 0.91552 0.91306 0.88220 0.91266 0.91563 0.89415 0.92052 0.84842 0.89991 0.81950 0.88151 0.74978 1.20609 1.22265 0.73260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.14 9.88 71.23 0.70 0.56 16 2 C 0.11 0.46 7.17 41.78 0.30 0.76 16 3 C -0.26 -1.56 6.29 -19.04 -0.12 -1.68 16 4 C 0.59 4.51 7.81 86.61 0.68 5.18 16 5 O -0.58 -7.66 14.81 -4.12 -0.06 -7.72 16 6 N -0.72 -1.23 5.46 -466.51 -2.55 -3.77 16 7 C 0.12 -0.18 5.36 86.38 0.46 0.28 16 8 C 0.08 -0.33 1.66 -10.26 -0.02 -0.35 16 9 F -0.20 -0.03 15.72 44.97 0.71 0.68 16 10 C -0.14 0.98 7.28 31.12 0.23 1.21 16 11 C 0.13 -0.37 4.32 45.51 0.20 -0.18 16 12 H 0.11 -0.13 7.47 -2.39 -0.02 -0.15 16 13 N -0.69 -0.60 5.19 -567.62 -2.95 -3.54 16 14 C 0.65 4.17 8.06 129.79 1.05 5.22 16 15 O -0.59 -6.30 11.48 19.84 0.23 -6.07 16 16 O -0.37 -2.19 9.94 -55.49 -0.55 -2.75 16 17 C 0.13 0.37 1.13 -10.79 -0.01 0.35 16 18 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 19 C -0.14 0.25 8.85 71.98 0.64 0.89 16 20 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 21 C -0.16 0.78 7.33 31.12 0.23 1.01 16 22 C -0.16 -0.37 9.03 23.62 0.21 -0.16 16 23 C 0.03 0.03 6.51 40.98 0.27 0.30 16 24 C -0.06 0.19 3.07 71.24 0.22 0.41 16 25 O -0.56 0.22 12.86 -148.98 -1.92 -1.69 16 26 Si 0.78 -3.08 30.58 68.60 2.10 -0.98 16 27 N -0.53 -0.29 5.90 -171.07 -1.01 -1.30 16 28 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 30 H 0.09 0.48 6.46 -2.39 -0.02 0.46 16 31 H 0.41 -0.41 7.31 -92.71 -0.68 -1.09 16 32 H 0.07 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.10 -0.34 7.94 -2.39 -0.02 -0.36 16 34 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.15 -1.64 8.10 -2.38 -0.02 -1.66 16 36 H 0.41 -0.35 7.89 -92.70 -0.73 -1.08 16 37 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.07 0.50 5.88 -2.39 -0.01 0.49 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.07 0.51 5.88 -2.39 -0.01 0.50 16 44 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.13 -1.09 7.96 -2.39 -0.02 -1.11 16 47 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 48 H 0.16 -0.31 5.88 -2.91 -0.02 -0.33 16 49 H 0.10 -0.79 7.96 -2.39 -0.02 -0.81 16 50 H 0.40 -3.37 8.74 -74.06 -0.65 -4.02 16 51 H -0.28 0.11 7.11 99.48 0.71 0.82 16 52 H -0.30 -1.13 7.11 99.48 0.71 -0.42 16 53 H 0.43 -1.82 8.96 -92.71 -0.83 -2.65 16 Total: 0.00 -24.78 430.79 -1.63 -26.41 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: -1.86 Total: -13.25 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.23 Total: 14.00 kcal Atomic # 7 Polarization: -2.11 SS G_CDS: -6.50 Total: -8.62 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -2.30 Total: -18.23 kcal Atomic # 9 Polarization: -0.03 SS G_CDS: 0.71 Total: 0.68 kcal Atomic # 14 Polarization: -3.08 SS G_CDS: 2.10 Total: -0.98 kcal Total: -24.78 -1.63 -26.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15774724_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.833 kcal (2) G-P(sol) polarization free energy of solvation -24.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds