Wall clock time and date at job start Sun Mar 7 2021 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34847 * 125.90739 * 2 1 4 4 C 1.40933 * 107.47014 * 180.23962 * 3 2 1 5 5 C 1.50706 * 126.26541 * 179.78798 * 4 3 2 6 6 O 1.42901 * 109.47425 * 254.97659 * 5 4 3 7 7 Si 1.86301 * 109.47178 * 14.98197 * 5 4 3 8 8 C 1.34848 * 107.46881 * 359.77280 * 4 3 2 9 9 C 1.50704 * 125.90161 * 180.02562 * 8 4 3 10 10 N 1.36563 * 108.20215 * 359.97438 * 8 4 3 11 11 C 1.40223 * 125.67126 * 179.97438 * 10 8 4 12 12 C 1.38552 * 119.99587 * 115.00025 * 11 10 8 13 13 C 1.39501 * 119.78525 * 180.02562 * 12 11 10 14 14 C 1.47855 * 120.11338 * 179.97438 * 13 12 11 15 15 O 1.21553 * 119.99955 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99755 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72373 * 16 14 13 18 18 H 1.09002 * 112.85201 * 24.08188 * 17 16 14 19 19 C 1.53784 * 113.61491 * 155.28109 * 17 16 14 20 20 C 1.53777 * 87.08172 * 89.11442 * 19 17 16 21 21 H 1.08994 * 113.61502 * 270.88324 * 20 19 17 22 22 C 1.53002 * 113.61128 * 140.06614 * 20 19 17 23 23 F 1.39900 * 109.47214 * 65.00299 * 22 20 19 24 24 C 1.53777 * 87.08146 * 25.43581 * 20 19 17 25 25 C 1.39576 * 119.77107 * 0.24910 * 13 12 11 26 26 C 1.38019 * 119.98848 * 359.46757 * 25 13 12 27 27 C 1.38219 * 120.21283 * 0.54029 * 26 25 13 28 28 H 1.09000 * 109.47008 * 270.15268 * 1 2 3 29 29 H 1.09008 * 109.46874 * 30.14516 * 1 2 3 30 30 H 1.09002 * 109.47682 * 150.14749 * 1 2 3 31 31 H 1.08003 * 126.26057 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.46956 * 134.97535 * 5 4 3 33 33 H 0.96706 * 113.99644 * 60.00198 * 6 5 4 34 34 H 1.48497 * 110.00149 * 179.97438 * 7 5 4 35 35 H 1.48504 * 109.99775 * 301.31680 * 7 5 4 36 36 H 1.09000 * 109.46925 * 269.97830 * 9 8 4 37 37 H 1.09002 * 109.47166 * 29.97457 * 9 8 4 38 38 H 1.09002 * 109.47004 * 149.97547 * 9 8 4 39 39 H 1.07998 * 120.10801 * 359.97438 * 12 11 10 40 40 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 41 41 H 1.08999 * 113.61037 * 203.66621 * 19 17 16 42 42 H 1.08999 * 113.61254 * 334.47782 * 19 17 16 43 43 H 1.09003 * 109.47103 * 184.99636 * 22 20 19 44 44 H 1.08996 * 109.47678 * 304.99835 * 22 20 19 45 45 H 1.08999 * 113.61239 * 220.01646 * 24 20 19 46 46 H 1.08999 * 113.61926 * 89.11880 * 24 20 19 47 47 H 1.08001 * 120.00649 * 179.74801 * 25 13 12 48 48 H 1.08001 * 119.89303 * 180.24889 * 26 25 13 49 49 H 1.08010 * 119.88448 * 179.76719 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0922 0.0000 4 6 3.6348 0.6465 -0.0056 5 6 4.8648 1.5173 -0.0121 6 8 5.4495 1.5062 -1.3160 7 14 4.3933 3.2614 0.4422 8 6 3.6120 -0.7018 -0.0038 9 6 4.8176 -1.6060 -0.0076 10 7 2.3077 -1.1064 0.0034 11 6 1.8643 -2.4366 0.0069 12 6 1.1698 -2.9324 1.0985 13 6 0.7311 -4.2567 1.0975 14 6 -0.0101 -4.7934 2.2588 15 8 -0.2378 -4.0806 3.2167 16 7 -0.4333 -6.0730 2.2552 17 6 -1.1625 -6.6066 3.4084 18 1 -1.6583 -5.8306 3.9916 19 6 -2.0745 -7.7959 3.0640 20 6 -0.8644 -8.7032 3.3419 21 1 -0.2404 -8.8793 2.4658 22 6 -1.2224 -9.9917 4.0852 23 9 -2.0425 -10.7847 3.2755 24 6 -0.3376 -7.5868 4.2590 25 6 0.9993 -5.0748 -0.0010 26 6 1.6868 -4.5695 -1.0859 27 6 2.1213 -3.2574 -1.0844 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8888 -0.5161 30 1 -0.3634 -0.8913 -0.5115 31 1 1.9671 2.1204 0.0004 32 1 5.5843 1.1352 0.7120 33 1 4.8640 1.8341 -2.0124 34 1 5.5976 4.1302 0.4400 35 1 3.3886 3.7828 -0.5191 36 1 5.1037 -1.8257 -1.0362 37 1 5.6446 -1.1112 0.5017 38 1 4.5766 -2.5352 0.5088 39 1 0.9694 -2.2960 1.9477 40 1 -0.2513 -6.6420 1.4909 41 1 -2.8952 -7.9348 3.7677 42 1 -2.4018 -7.8085 2.0244 43 1 -0.3103 -10.5385 4.3245 44 1 -1.7504 -9.7452 5.0063 45 1 0.7386 -7.4315 4.1838 46 1 -0.6834 -7.6687 5.2895 47 1 0.6650 -6.1018 -0.0041 48 1 1.8900 -5.2028 -1.9369 49 1 2.6622 -2.8686 -1.9346 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_12335854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:08 Heat of formation + Delta-G solvation = -10.634331 kcal Electronic energy + Delta-G solvation = -31510.218030 eV Core-core repulsion = 27126.930914 eV Total energy + Delta-G solvation = -4383.287116 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -48.52159 -42.91941 -41.59791 -40.11259 -39.00443 -37.82220 -35.03490 -34.07610 -33.72826 -32.35843 -30.56221 -30.16650 -29.34915 -27.24888 -26.72459 -25.54928 -24.76019 -23.75105 -23.48382 -22.13315 -21.08654 -20.45801 -20.39530 -18.80297 -17.68916 -17.59742 -17.36923 -17.19612 -17.09143 -16.76694 -16.64838 -16.41989 -16.06944 -15.95973 -15.65606 -15.46376 -15.08894 -15.06225 -14.77632 -14.62129 -14.31934 -14.12759 -14.06578 -13.83512 -13.70256 -13.50367 -13.45702 -13.29203 -13.26454 -13.23811 -12.92808 -12.71701 -12.53282 -12.24847 -12.15810 -11.72393 -11.70598 -11.51116 -11.27154 -11.15248 -10.57886 -10.41118 -10.32599 -10.11295 -9.55352 -8.86209 -4.84815 -0.46853 -0.07118 1.07217 1.41558 1.59064 1.63498 1.71158 1.75642 1.95189 2.02598 2.55014 3.34574 3.40001 3.42138 3.56454 3.63828 3.65197 3.66462 3.78114 3.86412 3.90630 3.95784 4.08523 4.11879 4.16133 4.21379 4.30684 4.36770 4.39479 4.43569 4.58568 4.58764 4.61976 4.65219 4.70420 4.72108 4.74004 4.78772 4.82400 4.96010 4.97647 4.99893 5.00606 5.05176 5.06418 5.11062 5.13040 5.14907 5.33495 5.47260 5.53530 5.95502 6.12236 6.34198 6.44157 6.57816 7.01637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.015 3.985 3 C -0.198 4.198 4 C -0.202 4.202 5 C -0.043 4.043 6 O -0.550 6.550 7 Si 0.767 3.233 8 C 0.040 3.960 9 C -0.079 4.079 10 N -0.405 5.405 11 C 0.097 3.903 12 C -0.062 4.062 13 C -0.133 4.133 14 C 0.561 3.439 15 O -0.575 6.575 16 N -0.692 5.692 17 C 0.111 3.889 18 H 0.088 0.912 19 C -0.132 4.132 20 C -0.139 4.139 21 H 0.109 0.891 22 C 0.063 3.937 23 F -0.236 7.236 24 C -0.136 4.136 25 C -0.065 4.065 26 C -0.101 4.101 27 C -0.084 4.084 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.114 0.886 33 H 0.382 0.618 34 H -0.303 1.303 35 H -0.285 1.285 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.416 0.584 41 H 0.103 0.897 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.167 0.833 48 H 0.174 0.826 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 -6.037 -1.328 6.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.222 4.222 4 C -0.208 4.208 5 C -0.153 4.153 6 O -0.357 6.357 7 Si 0.673 3.327 8 C -0.069 4.069 9 C -0.137 4.137 10 N -0.080 5.080 11 C 0.008 3.992 12 C -0.082 4.082 13 C -0.136 4.136 14 C 0.350 3.650 15 O -0.456 6.456 16 N -0.344 5.344 17 C 0.005 3.995 18 H 0.106 0.894 19 C -0.170 4.170 20 C -0.158 4.158 21 H 0.127 0.873 22 C 0.008 3.992 23 F -0.218 7.218 24 C -0.175 4.175 25 C -0.083 4.083 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.131 0.869 33 H 0.231 0.769 34 H -0.232 1.232 35 H -0.212 1.212 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.254 0.746 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.185 0.815 48 H 0.191 0.809 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.093 -5.295 -0.574 5.437 hybrid contribution 0.005 -0.140 -1.355 1.362 sum -1.088 -5.435 -1.928 5.869 Atomic orbital electron populations 1.20363 0.86863 1.03695 1.03110 1.20749 0.94341 0.85061 1.09221 1.20789 0.92056 0.98174 1.11196 1.19671 0.94990 0.92819 1.13318 1.24402 0.94555 1.09220 0.87158 1.86533 1.44564 1.87234 1.17393 0.93831 0.77172 0.72205 0.89456 1.20579 0.84363 0.94405 1.07601 1.20323 0.92906 0.97315 1.03139 1.41515 1.05651 1.03242 1.57610 1.17644 1.02057 0.83760 0.95730 1.21128 0.95526 0.94994 0.96559 1.19710 1.03361 0.94479 0.96086 1.18408 0.78353 0.82058 0.86228 1.90798 1.58214 1.59378 1.37167 1.45440 1.56644 1.11285 1.21016 1.21912 0.94053 0.95611 0.87895 0.89430 1.23317 0.96889 0.92963 1.03819 1.23206 0.98769 0.93411 1.00379 0.87314 1.22189 0.94296 0.90078 0.92628 1.92741 1.75806 1.76667 1.76566 1.23377 1.00723 0.93959 0.99440 1.21773 0.94945 1.00514 0.91091 1.21429 0.96600 0.94315 0.99545 1.21643 0.97947 0.94534 0.96198 0.90737 0.88754 0.92055 0.83199 0.86861 0.76916 1.23156 1.21183 0.90359 0.89653 0.91774 0.86218 0.74556 0.87875 0.89871 0.89448 0.89427 0.90836 0.87721 0.81549 0.80885 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 9.94 71.23 0.71 0.61 16 2 C 0.01 0.07 6.81 41.04 0.28 0.35 16 3 C -0.20 -0.99 9.27 22.15 0.21 -0.78 16 4 C -0.20 -1.04 5.35 -19.98 -0.11 -1.15 16 5 C -0.04 -0.15 2.60 71.24 0.19 0.03 16 6 O -0.55 -3.06 12.88 -148.98 -1.92 -4.98 16 7 Si 0.77 1.74 30.86 68.60 2.12 3.85 16 8 C 0.04 0.21 6.81 41.04 0.28 0.49 16 9 C -0.08 -0.11 9.72 71.24 0.69 0.58 16 10 N -0.41 -2.01 2.79 -320.37 -0.89 -2.90 16 11 C 0.10 0.22 4.65 38.04 0.18 0.40 16 12 C -0.06 -0.24 9.28 22.65 0.21 -0.02 16 13 C -0.13 0.00 5.87 -20.10 -0.12 -0.12 16 14 C 0.56 1.87 7.77 86.79 0.67 2.54 16 15 O -0.58 -7.25 15.95 -3.88 -0.06 -7.31 16 16 N -0.69 2.53 5.21 -442.89 -2.31 0.22 16 17 C 0.11 -0.33 4.32 45.52 0.20 -0.14 16 18 H 0.09 0.16 7.47 -2.39 -0.02 0.14 16 19 C -0.13 0.82 7.34 31.12 0.23 1.04 16 20 C -0.14 1.01 3.98 -10.27 -0.04 0.97 16 21 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 22 C 0.06 -0.36 7.33 71.98 0.53 0.17 16 23 F -0.24 -0.38 17.30 44.97 0.78 0.40 16 24 C -0.14 0.78 7.44 31.12 0.23 1.01 16 25 C -0.06 0.47 9.54 22.54 0.21 0.68 16 26 C -0.10 0.78 10.02 22.21 0.22 1.00 16 27 C -0.08 0.22 9.72 22.44 0.22 0.44 16 28 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 30 H 0.06 0.08 7.83 -2.39 -0.02 0.06 16 31 H 0.15 0.37 6.52 -2.91 -0.02 0.35 16 32 H 0.11 0.24 7.50 -2.38 -0.02 0.22 16 33 H 0.38 0.28 8.70 -74.05 -0.64 -0.36 16 34 H -0.30 -2.73 7.11 99.48 0.71 -2.02 16 35 H -0.29 -1.73 7.01 99.48 0.70 -1.03 16 36 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 0.07 7.50 -2.39 -0.02 0.05 16 38 H 0.06 0.05 7.83 -2.39 -0.02 0.03 16 39 H 0.12 0.98 7.65 -2.91 -0.02 0.96 16 40 H 0.42 -4.22 6.73 -92.71 -0.62 -4.84 16 41 H 0.10 -0.66 8.10 -2.39 -0.02 -0.68 16 42 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 43 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.09 -0.69 8.06 -2.39 -0.02 -0.71 16 45 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 46 H 0.10 -0.73 8.04 -2.39 -0.02 -0.75 16 47 H 0.17 -2.42 6.40 -2.91 -0.02 -2.43 16 48 H 0.17 -2.40 8.06 -2.91 -0.02 -2.42 16 49 H 0.14 -0.53 8.06 -2.91 -0.02 -0.55 16 Total: 0.00 -21.78 408.33 2.44 -19.34 By element: Atomic # 1 Polarization: -16.47 SS G_CDS: -0.26 Total: -16.72 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 4.99 Total: 8.11 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -3.20 Total: -2.68 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.98 Total: -12.29 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.78 Total: 0.40 kcal Atomic # 14 Polarization: 1.74 SS G_CDS: 2.12 Total: 3.85 kcal Total: -21.78 2.44 -19.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_12335854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.705 kcal (2) G-P(sol) polarization free energy of solvation -21.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds