Wall clock time and date at job start Sun Mar 7 2021 04:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34815 * 125.90147 * 2 1 4 4 C 1.40988 * 107.48204 * 180.22336 * 3 2 1 5 5 C 1.50700 * 126.25329 * 179.79337 * 4 3 2 6 6 O 1.42906 * 109.46965 * 254.97270 * 5 4 3 7 7 Si 1.86303 * 109.47286 * 14.97047 * 5 4 3 8 8 C 1.34804 * 107.49062 * 359.77209 * 4 3 2 9 9 C 1.50702 * 125.90372 * 180.02562 * 8 4 3 10 10 N 1.36651 * 108.19248 * 359.97438 * 8 4 3 11 11 C 1.39671 * 125.68253 * 179.97438 * 10 8 4 12 12 C 1.40206 * 120.15506 * 269.98074 * 11 10 8 13 13 C 1.47574 * 120.18924 * 0.04553 * 12 11 10 14 14 O 1.21586 * 120.00777 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99818 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00094 * 179.97438 * 15 13 12 17 17 H 1.09001 * 112.84738 * 336.20138 * 16 15 13 18 18 C 1.53778 * 113.61081 * 107.50435 * 16 15 13 19 19 C 1.53780 * 87.08407 * 89.11814 * 18 16 15 20 20 H 1.09001 * 113.68615 * 270.87774 * 19 18 16 21 21 C 1.52992 * 113.61920 * 139.98052 * 19 18 16 22 22 F 1.39895 * 109.47294 * 87.50174 * 21 19 18 23 23 C 1.53778 * 113.61356 * 204.99853 * 16 15 13 24 24 C 1.39655 * 119.61551 * 180.02562 * 12 11 10 25 25 C 1.37830 * 119.91581 * 0.02562 * 24 12 11 26 26 C 1.38537 * 120.31279 * 359.71584 * 25 24 12 27 27 C 1.38068 * 120.38844 * 0.56282 * 26 25 24 28 28 H 1.08998 * 109.47091 * 270.16845 * 1 2 3 29 29 H 1.08999 * 109.47016 * 30.17421 * 1 2 3 30 30 H 1.09003 * 109.46990 * 150.16642 * 1 2 3 31 31 H 1.07999 * 126.25267 * 0.02562 * 3 2 1 32 32 H 1.08992 * 109.47417 * 134.97601 * 5 4 3 33 33 H 0.96705 * 113.99874 * 179.97438 * 6 5 4 34 34 H 1.48497 * 110.00063 * 178.67886 * 7 5 4 35 35 H 1.48492 * 110.00202 * 300.00297 * 7 5 4 36 36 H 1.08991 * 109.47368 * 269.99650 * 9 8 4 37 37 H 1.08997 * 109.47041 * 30.00422 * 9 8 4 38 38 H 1.09003 * 109.47034 * 149.99855 * 9 8 4 39 39 H 0.96997 * 119.99860 * 0.02562 * 15 13 12 40 40 H 1.09000 * 113.61656 * 203.66561 * 18 16 15 41 41 H 1.09001 * 113.61578 * 334.56769 * 18 16 15 42 42 H 1.09001 * 109.47389 * 207.50401 * 21 19 18 43 43 H 1.09001 * 109.47153 * 327.50311 * 21 19 18 44 44 H 1.09005 * 113.61459 * 25.44194 * 23 16 15 45 45 H 1.08999 * 113.60900 * 156.33516 * 23 16 15 46 46 H 1.07997 * 120.04012 * 180.02562 * 24 12 11 47 47 H 1.07998 * 119.84020 * 180.02562 * 25 24 12 48 48 H 1.07996 * 119.80499 * 180.27737 * 26 25 24 49 49 H 1.08002 * 119.96388 * 179.72398 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0920 0.0000 4 6 3.6352 0.6466 -0.0052 5 6 4.8647 1.5180 -0.0115 6 8 5.4497 1.5069 -1.3153 7 14 4.3921 3.2620 0.4423 8 6 3.6134 -0.7013 -0.0031 9 6 4.8196 -1.6047 -0.0066 10 7 2.3084 -1.1068 0.0038 11 6 1.8672 -2.4320 0.0074 12 6 1.6382 -3.1014 -1.2031 13 6 1.8630 -2.4101 -2.4874 14 8 2.2475 -1.2567 -2.4980 15 7 1.6422 -3.0575 -3.6488 16 6 1.8649 -2.3711 -4.9238 17 1 1.7991 -1.2865 -4.8377 18 6 3.1161 -2.8568 -5.6744 19 6 2.2131 -3.9098 -6.3381 20 1 2.1418 -4.8417 -5.7771 21 6 2.5170 -4.1308 -7.8211 22 9 3.5164 -5.1008 -7.9529 23 6 1.0399 -2.9481 -6.0862 24 6 1.1965 -4.4261 -1.1863 25 6 0.9883 -5.0661 0.0165 26 6 1.2207 -4.4034 1.2106 27 6 1.6519 -3.0918 1.2090 28 1 -0.3633 0.0030 1.0276 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5113 31 1 1.9666 2.1201 0.0004 32 1 5.5842 1.1364 0.7127 33 1 6.2471 2.0485 -1.3932 34 1 5.6006 4.1246 0.4707 35 1 3.4114 3.7939 -0.5377 36 1 5.1063 -1.8241 -1.0350 37 1 5.6459 -1.1094 0.5033 38 1 4.5789 -2.5341 0.5096 39 1 1.3351 -3.9775 -3.6404 40 1 3.5180 -2.1233 -6.3734 41 1 3.8782 -3.2835 -5.0224 42 1 1.6143 -4.4678 -8.3307 43 1 2.8574 -3.1956 -8.2656 44 1 0.1257 -3.4486 -5.7667 45 1 0.8741 -2.2396 -6.8978 46 1 1.0184 -4.9484 -2.1147 47 1 0.6471 -6.0908 0.0280 48 1 1.0591 -4.9142 2.1483 49 1 1.8267 -2.5803 2.1440 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_12335856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:07:11 Heat of formation + Delta-G solvation = 1.017243 kcal Electronic energy + Delta-G solvation = -33292.050900 eV Core-core repulsion = 28909.269035 eV Total energy + Delta-G solvation = -4382.781866 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.58180 -42.87060 -41.38875 -40.04659 -38.92551 -37.80729 -34.92768 -34.17555 -33.62380 -32.31288 -30.50609 -30.13395 -29.37075 -27.25971 -26.81753 -25.39040 -24.58396 -23.87429 -23.29503 -22.07390 -21.00628 -20.45963 -19.95137 -18.94336 -18.46969 -17.84830 -17.39170 -17.10957 -16.82353 -16.73196 -16.35962 -16.21697 -16.02267 -15.91257 -15.73799 -15.32262 -15.13003 -14.92301 -14.76786 -14.44447 -14.24334 -14.15786 -13.94138 -13.76596 -13.68625 -13.55463 -13.46032 -13.36305 -13.23717 -13.11593 -12.93467 -12.56404 -12.40389 -12.36313 -12.16641 -11.90820 -11.87387 -11.56011 -11.20255 -11.06673 -10.33690 -10.31991 -10.13491 -10.02089 -9.54270 -8.68316 -4.88855 -0.43054 0.04498 1.18157 1.40726 1.60378 1.71868 1.85071 1.88629 1.97883 2.05719 2.59370 3.28941 3.35292 3.48455 3.56375 3.62556 3.67278 3.73274 3.78083 3.96684 4.03213 4.10128 4.17539 4.18131 4.20042 4.24314 4.26502 4.33580 4.36216 4.45647 4.52548 4.53698 4.62869 4.63888 4.66902 4.68324 4.70551 4.73562 4.75758 4.92311 4.92885 4.96978 4.98342 5.06373 5.13515 5.19106 5.23685 5.28700 5.43043 5.48686 5.63973 6.09435 6.24807 6.37104 6.63157 6.71052 7.09800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 C -0.209 4.209 4 C -0.171 4.171 5 C -0.050 4.050 6 O -0.562 6.562 7 Si 0.776 3.224 8 C 0.053 3.947 9 C -0.072 4.072 10 N -0.391 5.391 11 C 0.143 3.857 12 C -0.147 4.147 13 C 0.543 3.457 14 O -0.545 6.545 15 N -0.697 5.697 16 C 0.115 3.885 17 H 0.078 0.922 18 C -0.149 4.149 19 C -0.135 4.135 20 H 0.106 0.894 21 C 0.063 3.937 22 F -0.240 7.240 23 C -0.118 4.118 24 C -0.076 4.076 25 C -0.106 4.106 26 C -0.074 4.074 27 C -0.119 4.119 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.385 0.615 34 H -0.283 1.283 35 H -0.310 1.310 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.412 0.588 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.159 0.841 47 H 0.170 0.830 48 H 0.167 0.833 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 -7.072 3.235 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.232 4.232 4 C -0.177 4.177 5 C -0.159 4.159 6 O -0.370 6.370 7 Si 0.682 3.318 8 C -0.057 4.057 9 C -0.129 4.129 10 N -0.065 5.065 11 C 0.053 3.947 12 C -0.151 4.151 13 C 0.331 3.669 14 O -0.423 6.423 15 N -0.350 5.350 16 C 0.009 3.991 17 H 0.096 0.904 18 C -0.188 4.188 19 C -0.154 4.154 20 H 0.124 0.876 21 C 0.008 3.992 22 F -0.221 7.221 23 C -0.156 4.156 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.093 4.093 27 C -0.138 4.138 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.234 0.766 34 H -0.210 1.210 35 H -0.238 1.238 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.251 0.749 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.130 0.870 46 H 0.176 0.824 47 H 0.188 0.812 48 H 0.184 0.816 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.230 -6.147 2.855 8.561 hybrid contribution 1.137 -0.097 -1.217 1.668 sum -4.093 -6.244 1.638 7.643 Atomic orbital electron populations 1.20275 0.87004 1.02709 1.03298 1.20470 0.93978 0.84877 1.08153 1.20565 0.92417 0.97706 1.12542 1.18596 0.93559 0.92255 1.13272 1.24304 0.94682 1.10317 0.86616 1.86662 1.46477 1.72232 1.31673 0.94035 0.77991 0.71880 0.87872 1.20229 0.84400 0.93983 1.07124 1.20188 0.93571 0.97652 1.01502 1.40976 1.05186 1.03003 1.57361 1.17847 0.99916 0.83424 0.93483 1.20217 1.06560 0.96491 0.91830 1.18541 0.77567 0.86155 0.84656 1.90950 1.45529 1.18085 1.87713 1.45434 1.68421 1.16959 1.04216 1.21793 0.97272 0.97126 0.82860 0.90383 1.23523 0.96834 0.98910 0.99540 1.23183 0.97364 0.98934 0.95870 0.87586 1.22266 0.89613 0.90439 0.96876 1.92736 1.65271 1.66960 1.97139 1.23243 0.97076 0.98318 0.96988 1.21595 0.95682 0.91251 1.00961 1.21696 0.97692 1.01959 0.91025 1.21719 0.94310 0.92607 1.00648 1.21503 0.99728 0.96163 0.96412 0.89320 0.90137 0.92820 0.84525 0.90102 0.76570 1.21049 1.23788 0.93145 0.89222 0.91339 0.74942 0.88737 0.92543 0.88482 0.89641 0.88679 0.86979 0.82396 0.81229 0.81563 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.09 71.24 0.72 0.33 16 2 C 0.03 0.38 5.98 41.02 0.25 0.63 16 3 C -0.21 -2.73 9.27 22.16 0.21 -2.52 16 4 C -0.17 -2.25 5.39 -19.98 -0.11 -2.36 16 5 C -0.05 -0.44 2.59 71.24 0.18 -0.26 16 6 O -0.56 -6.79 12.86 -148.98 -1.92 -8.71 16 7 Si 0.78 4.64 30.84 68.60 2.12 6.75 16 8 C 0.05 0.65 6.00 41.02 0.25 0.89 16 9 C -0.07 -0.58 9.88 71.24 0.70 0.13 16 10 N -0.39 -3.99 1.45 -319.52 -0.46 -4.46 16 11 C 0.14 0.72 4.52 38.50 0.17 0.90 16 12 C -0.15 -0.46 5.89 -19.99 -0.12 -0.58 16 13 C 0.54 4.26 7.77 86.71 0.67 4.93 16 14 O -0.55 -9.54 13.27 -3.99 -0.05 -9.60 16 15 N -0.70 -0.43 5.21 -443.16 -2.31 -2.74 16 16 C 0.12 0.15 4.32 45.52 0.20 0.34 16 17 H 0.08 0.59 7.46 -2.39 -0.02 0.57 16 18 C -0.15 -0.14 7.43 31.12 0.23 0.09 16 19 C -0.13 0.55 3.97 -10.27 -0.04 0.51 16 20 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 21 C 0.06 -0.21 7.39 71.98 0.53 0.33 16 22 F -0.24 -1.16 17.36 44.97 0.78 -0.38 16 23 C -0.12 0.69 7.39 31.12 0.23 0.92 16 24 C -0.08 0.39 9.54 22.52 0.21 0.61 16 25 C -0.11 0.89 10.02 22.24 0.22 1.11 16 26 C -0.07 0.51 10.03 22.30 0.22 0.73 16 27 C -0.12 0.11 9.96 22.35 0.22 0.33 16 28 H 0.09 0.09 8.14 -2.39 -0.02 0.08 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.30 7.83 -2.39 -0.02 0.28 16 31 H 0.14 1.54 6.55 -2.91 -0.02 1.52 16 32 H 0.08 0.33 7.50 -2.39 -0.02 0.32 16 33 H 0.39 1.09 8.74 -74.05 -0.65 0.44 16 34 H -0.28 -2.27 7.11 99.48 0.71 -1.56 16 35 H -0.31 -4.48 7.06 99.48 0.70 -3.77 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 38 H 0.07 0.34 7.83 -2.39 -0.02 0.32 16 39 H 0.41 -2.53 6.73 -92.71 -0.62 -3.16 16 40 H 0.09 0.07 7.90 -2.39 -0.02 0.05 16 41 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.09 -0.42 7.84 -2.39 -0.02 -0.44 16 44 H 0.09 -0.80 8.14 -2.38 -0.02 -0.81 16 45 H 0.11 -0.85 8.10 -2.39 -0.02 -0.87 16 46 H 0.16 -1.78 6.40 -2.91 -0.02 -1.79 16 47 H 0.17 -2.46 8.06 -2.91 -0.02 -2.49 16 48 H 0.17 -2.07 8.06 -2.91 -0.02 -2.09 16 49 H 0.14 -0.28 8.06 -2.91 -0.02 -0.30 16 Total: 0.00 -28.35 404.13 2.86 -25.49 By element: Atomic # 1 Polarization: -13.15 SS G_CDS: -0.25 Total: -13.41 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 4.96 Total: 7.05 kcal Atomic # 7 Polarization: -4.42 SS G_CDS: -2.78 Total: -7.20 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.97 Total: -18.30 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.78 Total: -0.38 kcal Atomic # 14 Polarization: 4.64 SS G_CDS: 2.12 Total: 6.75 kcal Total: -28.35 2.86 -25.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_12335856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.508 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds