Wall clock time and date at job start Sun Mar 7 2021 04:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.46911 * 2 1 4 4 C 1.50703 * 109.46865 * 240.00802 * 2 1 3 5 5 C 1.34189 * 126.54281 * 104.97870 * 4 2 1 6 6 N 1.36869 * 109.96591 * 179.97438 * 5 4 2 7 7 C 1.37402 * 109.98019 * 359.97438 * 6 5 4 8 8 C 1.39333 * 133.25030 * 180.02562 * 7 6 5 9 9 C 1.36350 * 120.23735 * 179.97438 * 8 7 6 10 10 C 1.40166 * 120.66755 * 359.97438 * 9 8 7 11 11 C 1.47658 * 119.97244 * 179.97438 * 10 9 8 12 12 O 1.21573 * 120.00010 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99714 * 359.97438 * 11 10 9 14 14 C 1.46499 * 119.99665 * 179.72385 * 13 11 10 15 15 H 1.08998 * 112.85361 * 336.47110 * 14 13 11 16 16 C 1.53778 * 113.61557 * 107.77998 * 14 13 11 17 17 C 1.53780 * 87.08092 * 89.11527 * 16 14 13 18 18 H 1.09000 * 113.61877 * 270.88531 * 17 16 14 19 19 C 1.53004 * 113.61485 * 139.97987 * 17 16 14 20 20 F 1.39903 * 109.46978 * 87.50465 * 19 17 16 21 21 C 1.53783 * 87.08328 * 25.43430 * 17 16 14 22 22 C 1.39182 * 120.05535 * 0.25157 * 10 9 8 23 23 C 1.39235 * 119.39213 * 359.47905 * 22 10 9 24 24 H 0.96691 * 113.99881 * 299.99447 * 1 2 3 25 25 H 1.08994 * 109.47433 * 120.00247 * 2 1 3 26 26 H 1.48495 * 110.00407 * 300.00379 * 3 2 1 27 27 H 1.48506 * 109.99815 * 61.31939 * 3 2 1 28 28 H 1.07994 * 125.01642 * 359.96620 * 5 4 2 29 29 H 0.96999 * 125.00971 * 179.97438 * 6 5 4 30 30 H 1.08003 * 119.88139 * 359.97192 * 8 7 6 31 31 H 1.07997 * 119.66352 * 179.97438 * 9 8 7 32 32 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 33 33 H 1.08998 * 113.61596 * 203.65958 * 16 14 13 34 34 H 1.08998 * 113.61243 * 334.56847 * 16 14 13 35 35 H 1.09003 * 109.47406 * 207.50528 * 19 17 16 36 36 H 1.08991 * 109.47238 * 327.50817 * 19 17 16 37 37 H 1.09000 * 113.61551 * 220.02042 * 21 17 16 38 38 H 1.09004 * 113.61245 * 89.11513 * 21 17 16 39 39 H 1.08003 * 120.30781 * 179.72211 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.4603 -0.1384 -2.3232 6 7 2.8029 -1.1002 -3.2347 7 6 2.4967 -2.3453 -2.7409 8 6 2.6369 -3.6350 -3.2494 9 6 2.2346 -4.7105 -2.5141 10 6 1.6764 -4.5371 -1.2402 11 6 1.2454 -5.7126 -0.4574 12 8 0.7608 -5.5627 0.6474 13 7 1.3884 -6.9516 -0.9683 14 6 0.9663 -8.1182 -0.1892 15 1 0.9445 -7.9256 0.8834 16 6 -0.3119 -8.7859 -0.7231 17 6 0.6025 -9.6443 -1.6130 18 1 0.8170 -9.1936 -2.5820 19 6 0.1578 -11.1043 -1.7207 20 9 -0.7600 -11.2362 -2.7684 21 6 1.7062 -9.4122 -0.5676 22 6 1.5227 -3.2574 -0.7147 23 6 1.9380 -2.1578 -1.4611 24 1 -0.3933 0.4416 0.7650 25 1 1.7924 -0.5138 0.8899 26 1 1.5614 2.4680 -1.2084 27 1 1.5878 2.4585 1.2243 28 1 2.5956 0.9239 -2.4628 29 1 3.2028 -0.9282 -4.1015 30 1 3.0658 -3.7833 -4.2295 31 1 2.3472 -5.7059 -2.9175 32 1 1.7747 -7.0711 -1.8499 33 1 -0.8520 -9.3598 0.0299 34 1 -0.9565 -8.1091 -1.2838 35 1 1.0251 -11.7349 -1.9161 36 1 -0.3114 -11.4112 -0.7861 37 1 2.6908 -9.2409 -1.0029 38 1 1.7178 -10.1573 0.2279 39 1 1.0890 -3.1189 0.2646 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_13287722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:00 Heat of formation + Delta-G solvation = -31.143802 kcal Electronic energy + Delta-G solvation = -24046.697648 eV Core-core repulsion = 20257.360172 eV Total energy + Delta-G solvation = -3789.337476 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.52554 -42.47502 -41.31250 -39.51737 -37.97197 -37.49378 -34.63620 -33.39413 -31.01705 -30.60795 -29.18009 -26.73188 -26.46218 -25.18435 -23.51959 -23.45094 -21.81496 -20.61925 -20.38089 -19.10253 -18.54898 -18.47950 -17.41044 -17.24220 -16.93857 -16.74789 -16.39440 -16.03204 -15.94107 -15.76443 -15.38235 -15.04760 -14.94664 -14.81709 -14.61170 -14.14396 -13.88331 -13.78547 -13.54256 -13.44554 -13.34447 -12.80044 -12.61099 -12.16649 -12.10832 -11.83871 -11.83508 -11.48719 -11.15913 -11.08955 -10.81138 -10.38395 -10.17135 -9.35140 -8.83404 -4.88635 -0.18032 0.18295 1.33209 1.47036 1.63858 1.79418 1.96850 2.03041 2.09523 2.84978 3.37201 3.43287 3.51882 3.60552 3.63575 3.69987 3.77990 3.81710 4.01536 4.10866 4.17824 4.24814 4.25291 4.39738 4.41050 4.52291 4.56780 4.61503 4.71075 4.76619 4.78327 4.84470 4.98496 5.01447 5.07068 5.20581 5.25385 5.32352 5.46036 5.55292 5.57397 5.96050 6.46330 6.56546 6.62673 7.14454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.066 4.066 3 Si 0.787 3.213 4 C -0.182 4.182 5 C 0.080 3.920 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.180 4.180 11 C 0.563 3.437 12 O -0.587 6.587 13 N -0.695 5.695 14 C 0.109 3.891 15 H 0.086 0.914 16 C -0.151 4.151 17 C -0.139 4.139 18 H 0.104 0.896 19 C 0.062 3.938 20 F -0.241 7.241 21 C -0.118 4.118 22 C -0.019 4.019 23 C -0.130 4.130 24 H 0.390 0.610 25 H 0.070 0.930 26 H -0.277 1.277 27 H -0.293 1.293 28 H 0.206 0.794 29 H 0.439 0.561 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.415 0.585 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 0.442 -4.332 8.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.173 4.173 3 Si 0.689 3.311 4 C -0.189 4.189 5 C -0.048 4.048 6 N -0.175 5.175 7 C 0.002 3.998 8 C -0.144 4.144 9 C -0.086 4.086 10 C -0.184 4.184 11 C 0.353 3.647 12 O -0.468 6.468 13 N -0.347 5.347 14 C 0.004 3.996 15 H 0.104 0.896 16 C -0.190 4.190 17 C -0.157 4.157 18 H 0.123 0.877 19 C 0.008 3.992 20 F -0.222 7.222 21 C -0.156 4.156 22 C -0.039 4.039 23 C -0.134 4.134 24 H 0.239 0.761 25 H 0.088 0.912 26 H -0.204 1.204 27 H -0.220 1.220 28 H 0.222 0.778 29 H 0.281 0.719 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.133 0.867 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.413 1.083 -4.266 8.621 hybrid contribution -1.412 -0.085 0.165 1.424 sum 6.001 0.999 -4.101 7.336 Atomic orbital electron populations 1.86585 1.19474 1.80824 1.50498 1.24571 0.83295 1.12504 0.96971 0.94108 0.89598 0.70153 0.77233 1.19824 1.09874 0.91067 0.98097 1.22089 0.99067 0.95580 0.88063 1.41729 1.53958 1.03165 1.18604 1.18649 0.99776 0.87881 0.93496 1.20069 1.04369 0.87851 1.02158 1.20878 0.95920 1.00206 0.91621 1.19562 1.09150 0.92145 0.97569 1.18471 0.77086 0.83988 0.85146 1.90754 1.46845 1.86720 1.22502 1.45427 1.63607 1.04362 1.21303 1.21898 0.96245 0.85198 0.96283 0.89607 1.23560 0.96722 0.98968 0.99724 1.23211 0.97610 0.95149 0.99746 0.87748 1.22281 0.91595 0.97227 0.88104 1.92736 1.70438 1.97164 1.61904 1.23258 0.98134 0.95377 0.98864 1.20583 0.94257 0.90610 0.98453 1.19205 1.05201 0.93447 0.95568 0.76076 0.91201 1.20391 1.22010 0.77756 0.71921 0.81926 0.82194 0.74682 0.88232 0.92420 0.88599 0.89425 0.88750 0.86675 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.05 12.86 -148.98 -1.92 -5.97 16 2 C -0.07 -0.21 3.05 71.24 0.22 0.00 16 3 Si 0.79 -2.01 30.80 68.60 2.11 0.10 16 4 C -0.18 -0.85 5.61 -18.61 -0.10 -0.96 16 5 C 0.08 -0.14 10.43 82.98 0.87 0.72 16 6 N -0.57 2.12 6.05 -187.49 -1.13 0.99 16 7 C 0.11 0.20 7.27 39.19 0.28 0.49 16 8 C -0.12 0.27 10.00 22.09 0.22 0.49 16 9 C -0.07 0.06 9.46 22.30 0.21 0.27 16 10 C -0.18 -1.25 5.87 -20.09 -0.12 -1.37 16 11 C 0.56 5.31 7.76 86.73 0.67 5.99 16 12 O -0.59 -10.89 15.93 -3.95 -0.06 -10.95 16 13 N -0.70 -0.82 5.21 -443.09 -2.31 -3.13 16 14 C 0.11 0.06 4.33 45.52 0.20 0.25 16 15 H 0.09 0.45 7.46 -2.39 -0.02 0.43 16 16 C -0.15 0.01 7.43 31.12 0.23 0.24 16 17 C -0.14 0.61 3.97 -10.27 -0.04 0.57 16 18 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 19 C 0.06 -0.23 7.39 71.98 0.53 0.30 16 20 F -0.24 -1.14 17.36 44.97 0.78 -0.36 16 21 C -0.12 0.77 7.39 31.12 0.23 1.00 16 22 C -0.02 -0.21 9.64 22.74 0.22 0.01 16 23 C -0.13 -1.01 6.34 -20.21 -0.13 -1.14 16 24 H 0.39 -0.32 8.74 -74.06 -0.65 -0.97 16 25 H 0.07 0.19 7.96 -2.39 -0.02 0.17 16 26 H -0.28 -0.34 7.04 99.48 0.70 0.36 16 27 H -0.29 -0.82 7.11 99.48 0.71 -0.11 16 28 H 0.21 -1.72 6.30 -2.91 -0.02 -1.73 16 29 H 0.44 -4.90 8.96 -92.71 -0.83 -5.73 16 30 H 0.16 -1.51 8.06 -2.91 -0.02 -1.53 16 31 H 0.16 -1.35 6.36 -2.91 -0.02 -1.37 16 32 H 0.41 -2.26 6.70 -92.71 -0.62 -2.88 16 33 H 0.10 -0.13 7.90 -2.39 -0.02 -0.14 16 34 H 0.06 0.21 8.14 -2.39 -0.02 0.20 16 35 H 0.10 -0.72 8.14 -2.39 -0.02 -0.74 16 36 H 0.09 -0.52 7.84 -2.39 -0.02 -0.53 16 37 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.11 -1.03 8.10 -2.39 -0.02 -1.04 16 39 H 0.11 1.62 7.64 -2.91 -0.02 1.60 16 Total: 0.00 -27.90 332.90 0.02 -27.88 By element: Atomic # 1 Polarization: -14.48 SS G_CDS: -0.95 Total: -15.43 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 3.49 Total: 6.86 kcal Atomic # 7 Polarization: 1.30 SS G_CDS: -3.44 Total: -2.15 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.98 Total: -16.92 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.78 Total: -0.36 kcal Atomic # 14 Polarization: -2.01 SS G_CDS: 2.11 Total: 0.10 kcal Total: -27.90 0.02 -27.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_13287722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.263 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds