Wall clock time and date at job start Sun Mar 7 2021 04:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47056 * 2 1 4 4 C 1.50703 * 109.47057 * 240.00551 * 2 1 3 5 5 C 1.33744 * 125.11402 * 299.99948 * 4 2 1 6 6 C 1.37804 * 115.07932 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69861 * 0.02562 * 6 5 4 8 8 C 1.47554 * 125.27465 * 180.02562 * 7 6 5 9 9 C 1.39827 * 120.00169 * 359.72842 * 8 7 6 10 10 C 1.36564 * 120.00503 * 179.71546 * 9 8 7 11 11 C 1.39833 * 119.99516 * 0.57695 * 10 9 8 12 12 C 1.47555 * 120.00069 * 179.67068 * 11 10 9 13 13 O 1.21596 * 120.00002 * 180.02562 * 12 11 10 14 14 N 1.34773 * 120.00096 * 0.02562 * 12 11 10 15 15 C 1.46500 * 120.00431 * 179.97438 * 14 12 11 16 16 H 1.09004 * 112.84195 * 25.33520 * 15 14 12 17 17 C 1.53783 * 113.61600 * 156.52679 * 15 14 12 18 18 C 1.53776 * 87.07671 * 89.12153 * 17 15 14 19 19 H 1.09007 * 113.61448 * 270.88254 * 18 17 15 20 20 C 1.53007 * 113.61355 * 140.06748 * 18 17 15 21 21 F 1.39899 * 109.46954 * 179.97438 * 20 18 17 22 22 C 1.53773 * 113.61691 * 254.14079 * 15 14 12 23 23 C 1.39840 * 119.99722 * 359.69752 * 11 10 9 24 24 C 1.36562 * 119.99702 * 359.97438 * 23 11 10 25 25 S 1.75853 * 125.12102 * 119.99581 * 4 2 1 26 26 H 0.96697 * 114.00505 * 59.99788 * 1 2 3 27 27 H 1.08993 * 109.47404 * 120.00593 * 2 1 3 28 28 H 1.48506 * 109.99703 * 60.00202 * 3 2 1 29 29 H 1.48500 * 109.99865 * 181.31912 * 3 2 1 30 30 H 1.07997 * 122.46347 * 359.72629 * 5 4 2 31 31 H 1.07998 * 122.65025 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.99404 * 359.97438 * 9 8 7 33 33 H 1.07992 * 120.00239 * 180.26841 * 10 9 8 34 34 H 0.97001 * 120.00238 * 0.02562 * 14 12 11 35 35 H 1.09000 * 113.61121 * 203.66835 * 17 15 14 36 36 H 1.09000 * 113.61523 * 334.57292 * 17 15 14 37 37 H 1.08993 * 109.46782 * 299.99315 * 20 18 17 38 38 H 1.08996 * 109.47020 * 59.99675 * 20 18 17 39 39 H 1.09000 * 113.61810 * 25.42615 * 22 15 14 40 40 H 1.08999 * 113.61900 * 156.33332 * 22 15 14 41 41 H 1.07997 * 119.99601 * 179.97438 * 23 11 10 42 42 H 1.08002 * 119.99117 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6720 -1.9846 -1.5430 6 6 2.2370 -2.4239 -2.7206 7 6 2.9666 -1.4967 -3.3765 8 6 3.6710 -1.7145 -4.6546 9 6 3.6166 -2.9646 -5.2787 10 6 4.2636 -3.1646 -6.4646 11 6 4.9906 -2.1226 -7.0487 12 6 5.6957 -2.3407 -8.3264 13 8 6.3282 -1.4347 -8.8341 14 7 5.6388 -3.5440 -8.9307 15 6 6.3384 -3.7604 -10.1995 16 1 7.1861 -3.0887 -10.3352 17 6 6.6714 -5.2362 -10.4755 18 6 5.2959 -5.3376 -11.1555 19 1 4.4902 -5.6079 -10.4728 20 6 5.3033 -6.1837 -12.4303 21 9 4.0150 -6.2182 -12.9746 22 6 5.4011 -3.8231 -11.4169 23 6 5.0496 -0.8741 -6.4216 24 6 4.3970 -0.6724 -5.2392 25 16 2.9465 0.0116 -2.4718 26 1 -0.3934 0.4417 -0.7650 27 1 1.7923 -0.5139 0.8899 28 1 1.5614 2.4678 1.2086 29 1 3.5345 1.7703 -0.0321 30 1 1.0676 -2.6237 -0.9163 31 1 2.1071 -3.4307 -3.0892 32 1 3.0594 -3.7708 -4.8249 33 1 4.2180 -4.1288 -6.9487 34 1 5.1339 -4.2666 -8.5259 35 1 7.5082 -5.3742 -11.1602 36 1 6.7578 -5.8405 -9.5725 37 1 5.9917 -5.7458 -13.1529 38 1 5.6237 -7.1978 -12.1914 39 1 4.4626 -3.2876 -11.2736 40 1 5.8912 -3.5757 -12.3586 41 1 5.6114 -0.0694 -6.8726 42 1 4.4423 0.2921 -4.7552 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_13308390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:08:17 Heat of formation + Delta-G solvation = -28.783321 kcal Electronic energy + Delta-G solvation = -26177.844705 eV Core-core repulsion = 22131.197845 eV Total energy + Delta-G solvation = -4046.646860 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.52357 -41.63663 -40.37183 -39.40035 -38.83416 -37.36437 -34.84458 -33.37731 -32.24949 -30.57162 -29.33982 -27.22626 -26.72913 -24.93564 -24.05028 -23.73852 -23.21744 -21.90550 -20.41718 -20.25430 -19.22114 -18.65868 -17.64607 -17.34109 -16.96339 -16.75174 -16.64005 -16.43525 -16.23387 -16.18684 -16.01120 -15.97718 -15.51160 -15.10026 -14.81592 -14.51329 -14.39379 -14.31940 -13.90429 -13.83714 -13.61619 -13.54389 -13.36734 -13.24132 -13.10202 -12.59757 -12.29816 -12.12713 -12.06801 -11.83291 -11.58003 -11.52297 -11.19457 -11.09389 -10.82587 -10.54243 -10.20500 -10.16421 -9.55701 -9.04259 -5.16497 -0.90490 0.23834 0.32518 0.37764 0.75760 1.21520 1.51097 1.57799 1.84368 1.93602 1.98628 2.80720 3.35412 3.38778 3.42509 3.44145 3.62598 3.66552 3.68206 3.74617 3.80412 3.83232 4.16818 4.18986 4.23803 4.30090 4.36444 4.40131 4.46133 4.54444 4.59129 4.62259 4.71059 4.78519 4.81873 4.90814 5.00420 5.01004 5.05902 5.09729 5.18129 5.21944 5.27935 5.31008 5.47477 5.53470 5.71890 6.40486 6.65978 7.08224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.025 4.025 3 Si 0.717 3.283 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.008 3.992 9 C -0.109 4.109 10 C -0.068 4.068 11 C -0.152 4.152 12 C 0.559 3.441 13 O -0.580 6.580 14 N -0.695 5.695 15 C 0.110 3.890 16 H 0.087 0.913 17 C -0.119 4.119 18 C -0.140 4.140 19 H 0.105 0.895 20 C 0.062 3.938 21 F -0.241 7.241 22 C -0.150 4.150 23 C -0.063 4.063 24 C -0.128 4.128 25 S 0.123 5.877 26 H 0.397 0.603 27 H 0.123 0.877 28 H -0.269 1.269 29 H -0.268 1.268 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.415 0.585 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -4.776 0.232 4.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.138 4.138 3 Si 0.620 3.380 4 C -0.338 4.338 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.128 4.128 10 C -0.086 4.086 11 C -0.155 4.155 12 C 0.348 3.652 13 O -0.460 6.460 14 N -0.347 5.347 15 C 0.004 3.996 16 H 0.105 0.895 17 C -0.157 4.157 18 C -0.158 4.158 19 H 0.123 0.877 20 C 0.007 3.993 21 F -0.222 7.222 22 C -0.189 4.189 23 C -0.082 4.082 24 C -0.147 4.147 25 S 0.390 5.610 26 H 0.247 0.753 27 H 0.140 0.860 28 H -0.194 1.194 29 H -0.194 1.194 30 H 0.171 0.829 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.147 0.853 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.652 -2.395 0.639 2.564 hybrid contribution -0.758 -1.770 0.485 1.986 sum -0.106 -4.165 1.125 4.316 Atomic orbital electron populations 1.86490 1.16523 1.82050 1.50415 1.24402 0.85294 1.09026 0.95086 0.94181 0.79518 0.76422 0.87868 1.25169 1.06966 0.99374 1.02338 1.20187 1.01271 0.94889 0.97704 1.20639 0.97651 1.01370 0.94950 1.23163 1.06646 0.98239 0.99657 1.18463 0.95048 0.94604 0.91343 1.21197 0.99977 0.96428 0.95238 1.21248 0.93871 0.98603 0.94884 1.20007 1.03168 0.96324 0.96003 1.18493 0.79736 0.82457 0.84514 1.90784 1.44388 1.43765 1.67107 1.45475 1.52855 1.13077 1.23263 1.21906 0.95523 0.99058 0.83070 0.89480 1.23243 0.96855 0.93510 1.02072 1.23265 0.99898 0.95032 0.97621 0.87698 1.22269 0.79445 1.02709 0.94843 1.92736 1.43429 1.98093 1.87964 1.23575 1.00166 0.96206 0.98918 1.20949 0.96596 0.96511 0.94156 1.21035 0.98276 0.99366 0.96027 1.84191 1.49134 1.13111 1.14576 0.75317 0.85992 1.19440 1.19367 0.82860 0.81602 0.82163 0.82097 0.74642 0.86725 0.88744 0.89401 0.88722 0.92234 0.88328 0.85286 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.67 12.86 -148.98 -1.92 -1.25 16 2 C -0.02 0.04 2.96 71.24 0.21 0.25 16 3 Si 0.72 -1.05 30.96 68.60 2.12 1.07 16 4 C -0.22 0.19 5.73 24.67 0.14 0.33 16 5 C -0.11 0.16 10.00 21.15 0.21 0.38 16 6 C -0.12 0.29 9.64 21.42 0.21 0.49 16 7 C -0.16 0.04 6.37 23.98 0.15 0.19 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.11 0.43 9.48 22.26 0.21 0.65 16 10 C -0.07 0.28 9.48 22.26 0.21 0.49 16 11 C -0.15 -0.33 5.88 -20.05 -0.12 -0.45 16 12 C 0.56 3.01 7.76 86.70 0.67 3.68 16 13 O -0.58 -8.28 15.95 -4.02 -0.06 -8.35 16 14 N -0.69 1.24 5.21 -443.18 -2.31 -1.07 16 15 C 0.11 -0.20 4.29 45.52 0.20 0.00 16 16 H 0.09 0.24 7.50 -2.38 -0.02 0.22 16 17 C -0.12 0.97 7.38 31.12 0.23 1.20 16 18 C -0.14 0.84 3.98 -10.17 -0.04 0.80 16 19 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 20 C 0.06 -0.30 7.36 71.98 0.53 0.23 16 21 F -0.24 -0.88 17.36 44.97 0.78 -0.10 16 22 C -0.15 0.30 7.45 31.21 0.23 0.53 16 23 C -0.06 -0.25 9.53 22.27 0.21 -0.04 16 24 C -0.13 -0.22 9.54 22.26 0.21 -0.01 16 25 S 0.12 -0.04 19.46 -56.49 -1.10 -1.14 16 26 H 0.40 -3.46 8.70 -74.06 -0.64 -4.11 16 27 H 0.12 -0.16 7.96 -2.39 -0.02 -0.18 16 28 H -0.27 -1.21 7.11 99.48 0.71 -0.50 16 29 H -0.27 -0.92 7.11 99.48 0.71 -0.21 16 30 H 0.15 -0.50 8.06 -2.91 -0.02 -0.53 16 31 H 0.17 -1.24 6.88 -2.91 -0.02 -1.26 16 32 H 0.16 -1.53 6.74 -2.91 -0.02 -1.55 16 33 H 0.16 -1.84 6.38 -2.91 -0.02 -1.86 16 34 H 0.41 -3.43 6.71 -92.71 -0.62 -4.05 16 35 H 0.11 -1.18 8.10 -2.39 -0.02 -1.20 16 36 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.09 -0.63 7.95 -2.39 -0.02 -0.65 16 38 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.10 -0.27 7.97 -2.39 -0.02 -0.29 16 41 H 0.13 0.72 7.64 -2.91 -0.02 0.70 16 42 H 0.13 -0.01 7.26 -2.91 -0.02 -0.03 16 Total: 0.00 -20.93 369.15 0.72 -20.21 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -0.15 Total: -17.99 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 3.35 Total: 8.60 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -2.31 Total: -1.07 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.98 Total: -9.59 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.78 Total: -0.10 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: 2.12 Total: 1.07 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.10 Total: -1.14 kcal Total: -20.93 0.72 -20.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_13308390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.570 kcal (2) G-P(sol) polarization free energy of solvation -20.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds