Wall clock time and date at job start Sun Mar 7 2021 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47408 * 2 1 4 4 C 1.50703 * 109.47256 * 240.00038 * 2 1 3 5 5 C 1.38241 * 119.94585 * 119.97488 * 4 2 1 6 6 C 1.38170 * 120.05781 * 179.76926 * 5 4 2 7 7 C 1.38716 * 119.93976 * 0.53357 * 6 5 4 8 8 O 1.35896 * 120.05262 * 179.74749 * 7 6 5 9 9 C 1.42905 * 117.00039 * 359.72147 * 8 7 6 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00169 * 180.02562 * 12 10 9 14 14 H 1.09006 * 112.84794 * 336.19876 * 13 12 10 15 15 C 1.53780 * 113.61396 * 107.49686 * 13 12 10 16 16 C 1.53783 * 87.08122 * 89.11854 * 15 13 12 17 17 H 1.09005 * 113.61330 * 270.88419 * 16 15 13 18 18 C 1.52996 * 113.69408 * 139.99271 * 16 15 13 19 19 F 1.39906 * 109.47208 * 202.47054 * 18 16 15 20 20 C 1.53771 * 113.61578 * 204.99635 * 13 12 10 21 21 C 1.38752 * 119.88840 * 359.47210 * 7 6 5 22 22 N 1.48003 * 120.02490 * 180.23091 * 21 7 6 23 23 O 1.21800 * 119.99932 * 179.97438 * 22 21 7 24 24 O 1.21797 * 120.00067 * 359.97438 * 22 21 7 25 25 C 1.38127 * 119.94619 * 0.24871 * 21 7 6 26 26 H 0.96703 * 114.00006 * 59.99837 * 1 2 3 27 27 H 1.09004 * 109.46922 * 120.00614 * 2 1 3 28 28 H 1.48506 * 109.99785 * 60.00155 * 3 2 1 29 29 H 1.48501 * 110.00100 * 181.31759 * 3 2 1 30 30 H 1.08005 * 119.97061 * 0.02866 * 5 4 2 31 31 H 1.07995 * 120.02585 * 180.26211 * 6 5 4 32 32 H 1.09000 * 109.47187 * 300.00222 * 9 8 7 33 33 H 1.09001 * 109.46558 * 60.00270 * 9 8 7 34 34 H 0.96996 * 119.99844 * 359.97438 * 12 10 9 35 35 H 1.09004 * 113.61867 * 203.66394 * 15 13 12 36 36 H 1.08998 * 113.61869 * 334.56979 * 15 13 12 37 37 H 1.08999 * 109.46888 * 322.46207 * 18 16 15 38 38 H 1.08997 * 109.47395 * 82.46532 * 18 16 15 39 39 H 1.09005 * 113.61657 * 25.43176 * 20 13 12 40 40 H 1.09004 * 113.61814 * 156.25124 * 20 13 12 41 41 H 1.07999 * 119.97460 * 179.97438 * 25 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7256 -0.0373 -2.1400 6 6 3.1914 -0.6878 -3.2665 7 6 2.8523 -2.0141 -3.4900 8 8 3.3049 -2.6546 -4.5998 9 6 4.1210 -1.8992 -5.4973 10 6 4.5251 -2.7677 -6.6607 11 8 4.1506 -3.9200 -6.7161 12 7 5.3025 -2.2640 -7.6397 13 6 5.6949 -3.1081 -8.7709 14 1 5.6691 -4.1719 -8.5343 15 6 4.9793 -2.7499 -10.0841 16 6 6.1301 -1.7654 -10.3510 17 1 5.9572 -0.7702 -9.9412 18 6 6.5877 -1.7356 -11.8106 19 9 7.8977 -1.2493 -11.8788 20 6 6.9991 -2.6597 -9.4510 21 6 2.0548 -2.6874 -2.5757 22 7 1.6953 -4.1041 -2.8086 23 8 0.9957 -4.6949 -2.0055 24 8 2.0991 -4.6793 -3.8034 25 6 1.5965 -2.0344 -1.4482 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5140 0.8900 28 1 1.5616 2.4678 1.2086 29 1 3.5347 1.7702 -0.0321 30 1 2.9858 0.9967 -1.9677 31 1 3.8154 -0.1627 -3.9745 32 1 3.5591 -1.0400 -5.8637 33 1 5.0128 -1.5539 -4.9742 34 1 5.6017 -1.3424 -7.5956 35 1 4.9355 -3.5739 -10.7965 36 1 4.0145 -2.2644 -9.9373 37 1 6.5527 -2.7440 -12.2230 38 1 5.9282 -1.0851 -12.3850 39 1 7.6650 -2.1013 -8.7930 40 1 7.5084 -3.4593 -9.9890 41 1 0.9754 -2.5579 -0.7364 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_4549638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:14 Heat of formation + Delta-G solvation = -93.603741 kcal Electronic energy + Delta-G solvation = -29112.413893 eV Core-core repulsion = 24492.547516 eV Total energy + Delta-G solvation = -4619.866378 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.120 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.50892 -43.30025 -41.83232 -41.14108 -39.84454 -38.98707 -37.59917 -37.36221 -34.67589 -33.47634 -32.24934 -30.43664 -28.87566 -27.82893 -26.70209 -26.56084 -24.36478 -23.57765 -22.84335 -22.01577 -20.58218 -20.34213 -19.78075 -19.15339 -18.64566 -18.55041 -18.13707 -17.60771 -17.35288 -17.03007 -16.77129 -16.66528 -16.43013 -16.29948 -16.08603 -15.67290 -15.62048 -15.30406 -14.75724 -14.64723 -14.05320 -13.99635 -13.76481 -13.75625 -13.50781 -13.25290 -13.23076 -12.71217 -12.37874 -12.28250 -12.26854 -12.22500 -12.19376 -11.94918 -11.67901 -11.50714 -11.16185 -11.04954 -10.84196 -10.56671 -10.18030 -9.79440 -4.99727 -1.32021 -0.24828 0.15138 0.34861 1.18217 1.27079 1.41573 1.64045 2.02135 2.05119 2.28891 3.11437 3.23342 3.36374 3.38693 3.43028 3.50126 3.58381 3.67700 3.70857 3.78992 3.79984 3.91497 4.01538 4.12937 4.23289 4.28570 4.35482 4.41306 4.50584 4.62242 4.62967 4.73670 4.81416 4.83587 4.85822 5.02690 5.06789 5.07579 5.14947 5.18752 5.52419 5.75216 6.40839 6.42022 6.73434 7.12786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.083 4.083 3 Si 0.800 3.200 4 C -0.150 4.150 5 C -0.004 4.004 6 C -0.188 4.188 7 C 0.194 3.806 8 O -0.292 6.292 9 C 0.025 3.975 10 C 0.510 3.490 11 O -0.565 6.565 12 N -0.691 5.691 13 C 0.113 3.887 14 H 0.080 0.920 15 C -0.138 4.138 16 C -0.136 4.136 17 H 0.115 0.885 18 C 0.061 3.939 19 F -0.236 7.236 20 C -0.132 4.132 21 C -0.105 4.105 22 N 0.034 4.966 23 O -0.204 6.204 24 O -0.173 6.173 25 C -0.004 4.004 26 H 0.398 0.602 27 H 0.109 0.891 28 H -0.307 1.307 29 H -0.264 1.264 30 H 0.189 0.811 31 H 0.207 0.793 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.422 0.578 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 14.444 -3.614 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.191 4.191 3 Si 0.704 3.296 4 C -0.151 4.151 5 C -0.022 4.022 6 C -0.207 4.207 7 C 0.144 3.856 8 O -0.202 6.202 9 C -0.051 4.051 10 C 0.296 3.704 11 O -0.442 6.442 12 N -0.346 5.346 13 C 0.007 3.993 14 H 0.098 0.902 15 C -0.176 4.176 16 C -0.154 4.154 17 H 0.133 0.867 18 C 0.007 3.993 19 F -0.218 7.218 20 C -0.170 4.170 21 C -0.190 4.190 22 N 0.544 4.456 23 O -0.411 6.411 24 O -0.387 6.387 25 C -0.023 4.023 26 H 0.248 0.752 27 H 0.127 0.873 28 H -0.235 1.235 29 H -0.190 1.190 30 H 0.206 0.794 31 H 0.224 0.776 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.261 0.739 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.030 14.309 -2.654 15.101 hybrid contribution -0.108 -1.403 0.297 1.438 sum 3.922 12.907 -2.357 13.694 Atomic orbital electron populations 1.86531 1.17240 1.82216 1.50640 1.25483 0.85488 1.12074 0.96010 0.93803 0.77925 0.72483 0.85416 1.20460 1.02132 0.92655 0.99903 1.21723 0.89426 1.01178 0.89852 1.21822 1.05954 0.90489 1.02391 1.18960 0.89644 0.92080 0.84929 1.86469 1.63666 1.39781 1.30315 1.23119 0.98225 0.94482 0.89318 1.20540 0.78411 0.87650 0.83801 1.90854 1.54792 1.20257 1.78262 1.45292 1.51462 1.16456 1.21345 1.21839 0.96503 0.95409 0.85557 0.90185 1.23383 0.97931 0.99510 0.96800 1.23213 0.97036 1.00261 0.94936 0.86671 1.22193 0.78304 1.01159 0.97681 1.92742 1.40993 1.90411 1.97608 1.23283 0.95481 1.00054 0.98144 1.20870 1.13492 0.81507 1.03118 1.43906 0.98214 1.04014 0.99451 1.94505 1.36100 1.68328 1.42149 1.94677 1.56372 1.69401 1.18285 1.20839 0.94175 0.94796 0.92464 0.75175 0.87333 1.23498 1.18969 0.79446 0.77598 0.83451 0.83907 0.73916 0.88332 0.90489 0.89831 0.89328 0.89584 0.88508 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.15 12.77 -148.98 -1.90 0.25 16 2 C -0.08 0.54 2.82 71.24 0.20 0.74 16 3 Si 0.80 -8.51 29.78 68.60 2.04 -6.46 16 4 C -0.15 0.92 5.39 -19.85 -0.11 0.82 16 5 C 0.00 0.06 8.66 22.25 0.19 0.25 16 6 C -0.19 2.20 9.04 22.37 0.20 2.40 16 7 C 0.19 -0.04 6.67 22.51 0.15 0.11 16 8 O -0.29 -1.07 7.68 -63.36 -0.49 -1.56 16 9 C 0.03 -0.21 5.22 71.24 0.37 0.16 16 10 C 0.51 0.04 7.91 87.66 0.69 0.73 16 11 O -0.56 -7.99 16.10 16.00 0.26 -7.73 16 12 N -0.69 4.92 5.26 -440.05 -2.32 2.61 16 13 C 0.11 -0.42 4.32 45.51 0.20 -0.22 16 14 H 0.08 0.22 7.46 -2.38 -0.02 0.20 16 15 C -0.14 0.86 7.43 31.12 0.23 1.09 16 16 C -0.14 1.15 4.00 -10.27 -0.04 1.11 16 17 H 0.12 -1.31 8.14 -2.38 -0.02 -1.33 16 18 C 0.06 -0.38 7.41 71.98 0.53 0.15 16 19 F -0.24 -0.25 17.22 44.97 0.77 0.53 16 20 C -0.13 0.89 7.25 31.12 0.23 1.11 16 21 C -0.10 -0.69 6.87 36.47 0.25 -0.44 16 22 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 23 O -0.20 -3.79 18.45 18.89 0.35 -3.44 16 24 O -0.17 -3.72 17.24 25.61 0.44 -3.27 16 25 C 0.00 -0.01 9.12 22.26 0.20 0.20 16 26 H 0.40 -5.02 8.70 -74.06 -0.64 -5.66 16 27 H 0.11 -0.48 7.96 -2.38 -0.02 -0.50 16 28 H -0.31 0.20 7.11 99.48 0.71 0.91 16 29 H -0.26 2.28 7.11 99.48 0.71 2.99 16 30 H 0.19 -3.77 4.87 -2.91 -0.01 -3.79 16 31 H 0.21 -4.53 6.30 -2.91 -0.02 -4.55 16 32 H 0.15 -2.61 7.67 -2.39 -0.02 -2.63 16 33 H 0.14 -2.41 7.65 -2.39 -0.02 -2.43 16 34 H 0.42 -6.55 8.70 -92.71 -0.81 -7.35 16 35 H 0.10 -0.63 7.97 -2.38 -0.02 -0.64 16 36 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.08 -0.64 7.95 -2.39 -0.02 -0.66 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 40 H 0.10 -0.55 8.10 -2.38 -0.02 -0.57 16 41 H 0.15 0.56 7.61 -2.91 -0.02 0.54 16 Total: 0.00 -39.90 358.80 1.96 -37.95 By element: Atomic # 1 Polarization: -27.14 SS G_CDS: -0.30 Total: -27.44 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 3.30 Total: 8.21 kcal Atomic # 7 Polarization: 5.49 SS G_CDS: -2.52 Total: 2.97 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.34 Total: -15.75 kcal Atomic # 9 Polarization: -0.25 SS G_CDS: 0.77 Total: 0.53 kcal Atomic # 14 Polarization: -8.51 SS G_CDS: 2.04 Total: -6.46 kcal Total: -39.90 1.96 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_4549638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.657 kcal (2) G-P(sol) polarization free energy of solvation -39.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds