Wall clock time and date at job start Sun Mar 7 2021 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35999 * 116.99372 * 2 1 4 4 C 1.39155 * 120.06889 * 180.02562 * 3 2 1 5 5 O 1.35992 * 120.07298 * 359.97438 * 4 3 2 6 6 C 1.42906 * 117.00187 * 179.72897 * 5 4 3 7 7 C 1.50695 * 109.47045 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00413 * 0.27121 * 7 6 5 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99971 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.84942 * 25.33046 * 10 9 7 12 12 C 1.53781 * 113.61562 * 156.52736 * 10 9 7 13 13 C 1.53786 * 87.07827 * 89.11795 * 12 10 9 14 14 H 1.08997 * 113.61112 * 270.80055 * 13 12 10 15 15 C 1.52996 * 113.61039 * 139.98196 * 13 12 10 16 16 F 1.39902 * 109.47403 * 65.00386 * 15 13 12 17 17 C 1.53783 * 113.61722 * 254.13839 * 10 9 7 18 18 C 1.38565 * 119.85357 * 179.72710 * 4 3 2 19 19 C 1.38235 * 119.99920 * 0.27038 * 18 4 3 20 20 C 1.38257 * 120.14950 * 0.02562 * 19 18 4 21 21 C 1.50697 * 119.92799 * 179.97438 * 20 19 18 22 22 O 1.42911 * 109.46896 * 244.99687 * 21 20 19 23 23 Si 1.86297 * 109.47309 * 4.99609 * 21 20 19 24 24 C 1.38242 * 120.14103 * 359.97438 * 20 19 18 25 25 H 1.09007 * 109.47308 * 60.00400 * 1 2 3 26 26 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47612 * 300.00098 * 1 2 3 28 28 H 1.09005 * 109.47002 * 60.00042 * 6 5 4 29 29 H 1.09002 * 109.46834 * 300.00409 * 6 5 4 30 30 H 0.96999 * 120.00044 * 0.02562 * 9 7 6 31 31 H 1.09000 * 113.61420 * 203.66386 * 12 10 9 32 32 H 1.08993 * 113.61235 * 334.48750 * 12 10 9 33 33 H 1.09005 * 109.46592 * 184.99618 * 15 13 12 34 34 H 1.08994 * 109.47300 * 304.99813 * 15 13 12 35 35 H 1.09008 * 113.61277 * 25.42740 * 17 10 9 36 36 H 1.08992 * 113.61683 * 156.33587 * 17 10 9 37 37 H 1.08005 * 120.00132 * 180.24965 * 18 4 3 38 38 H 1.08001 * 119.93054 * 179.97438 * 19 18 4 39 39 H 1.08997 * 109.47418 * 125.00388 * 21 20 19 40 40 H 0.96697 * 113.99462 * 60.00011 * 22 21 20 41 41 H 1.48503 * 110.00045 * 180.02562 * 23 21 20 42 42 H 1.48499 * 109.99982 * 301.32123 * 23 21 20 43 43 H 1.08006 * 119.99640 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 3.4358 1.2865 -0.0005 5 8 4.1794 0.1479 -0.0005 6 6 5.6003 0.3009 -0.0071 7 6 6.2518 -1.0580 -0.0067 8 8 5.5670 -2.0589 -0.0063 9 7 7.5957 -1.1609 -0.0119 10 6 8.2292 -2.4818 -0.0109 11 1 7.5918 -3.2572 -0.4361 12 6 9.6586 -2.4800 -0.5779 13 6 10.1414 -2.1886 0.8528 14 1 10.1943 -1.1255 1.0878 15 6 11.4143 -2.9458 1.2362 16 9 12.4769 -2.5053 0.4398 17 6 8.8482 -2.8673 1.3430 18 6 4.0601 2.5235 -0.0063 19 6 3.3028 3.6799 -0.0058 20 6 1.9222 3.6058 0.0010 21 6 1.1014 4.8697 0.0020 22 8 0.3702 4.9617 1.2265 23 14 2.2299 6.3432 -0.1596 24 6 1.2931 2.3749 0.0067 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 5.9103 0.8532 0.8800 29 1 5.9026 0.8482 -0.9000 30 1 8.1434 -0.3604 -0.0154 31 1 9.9790 -3.4501 -0.9577 32 1 9.8493 -1.6671 -1.2785 33 1 11.6454 -2.7603 2.2852 34 1 11.2624 -4.0139 1.0809 35 1 8.3856 -2.3659 2.1932 36 1 8.9475 -3.9430 1.4873 37 1 5.1385 2.5842 -0.0108 38 1 3.7905 4.6435 -0.0098 39 1 0.4052 4.8515 -0.8363 40 1 0.9273 4.9825 2.0166 41 1 1.4326 7.5960 -0.1591 42 1 3.2046 6.3617 0.9606 43 1 0.2145 2.3197 0.0124 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15781660_60476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:09:34 Heat of formation + Delta-G solvation = -130.372898 kcal Electronic energy + Delta-G solvation = -27139.379872 eV Core-core repulsion = 22874.715689 eV Total energy + Delta-G solvation = -4264.664183 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.51579 -41.85790 -41.24781 -39.85003 -39.06497 -38.80385 -37.02362 -34.66646 -32.07445 -31.47886 -30.21017 -28.80431 -28.38612 -26.71640 -26.21365 -24.06467 -23.37392 -22.60167 -21.89003 -20.40605 -19.81110 -18.60473 -18.43931 -17.99971 -17.56056 -17.33551 -17.04841 -16.81978 -16.71620 -16.62675 -16.37142 -16.13563 -15.89028 -15.80687 -15.46871 -15.43182 -14.86400 -14.58357 -14.32821 -13.83428 -13.78418 -13.64188 -13.52701 -13.42538 -13.24212 -12.63908 -12.58875 -12.25314 -12.17704 -12.14194 -12.00475 -11.71021 -11.62427 -11.49520 -11.17680 -11.02946 -10.61396 -10.19049 -9.79470 -8.93005 -4.88291 0.16062 0.27264 1.33291 1.40799 1.44467 1.63068 1.99516 2.30452 2.54300 2.54749 3.35252 3.40817 3.41983 3.49201 3.65255 3.65921 3.78032 3.85066 3.89660 4.03583 4.10313 4.12867 4.13903 4.21858 4.27551 4.30382 4.35452 4.40215 4.56890 4.60322 4.64374 4.65889 4.73013 4.80824 4.83067 5.00173 5.01024 5.07070 5.11919 5.14796 5.36538 5.51399 5.59040 5.95715 6.38218 6.49198 6.52772 7.10649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.086 3.914 5 O -0.314 6.314 6 C 0.035 3.965 7 C 0.515 3.485 8 O -0.571 6.571 9 N -0.693 5.693 10 C 0.112 3.888 11 H 0.082 0.918 12 C -0.130 4.130 13 C -0.137 4.137 14 H 0.111 0.889 15 C 0.062 3.938 16 F -0.236 7.236 17 C -0.138 4.138 18 C -0.160 4.160 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.085 4.085 22 O -0.550 6.550 23 Si 0.777 3.223 24 C -0.151 4.151 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.421 0.579 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.175 0.825 38 H 0.158 0.842 39 H 0.122 0.878 40 H 0.386 0.614 41 H -0.308 1.308 42 H -0.273 1.273 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 4.217 -0.559 6.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.031 3.969 4 C 0.040 3.960 5 O -0.228 6.228 6 C -0.043 4.043 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.347 5.347 10 C 0.007 3.993 11 H 0.100 0.900 12 C -0.168 4.168 13 C -0.156 4.156 14 H 0.129 0.871 15 C 0.008 3.992 16 F -0.217 7.217 17 C -0.177 4.177 18 C -0.178 4.178 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.193 4.193 22 O -0.359 6.359 23 Si 0.682 3.318 24 C -0.170 4.170 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.259 0.741 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.193 0.807 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.235 0.765 41 H -0.236 1.236 42 H -0.200 1.200 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.274 3.827 -0.625 5.771 hybrid contribution -0.470 -0.112 1.178 1.274 sum 3.804 3.715 0.553 5.346 Atomic orbital electron populations 1.23286 0.76817 1.05201 1.02107 1.86192 1.22993 1.26615 1.89086 1.18677 0.89919 0.85633 1.02685 1.18587 0.88186 0.86503 1.02708 1.86221 1.18188 1.29099 1.89301 1.22768 0.79380 0.95002 1.07107 1.20582 0.82899 0.90911 0.75482 1.90773 1.64064 1.40192 1.49888 1.45344 1.05090 1.09619 1.74628 1.21858 0.94139 0.85254 0.98084 0.90001 1.23297 0.92675 1.04249 0.96618 1.23251 0.93533 1.01589 0.97224 0.87092 1.22189 0.82772 0.99657 0.94608 1.92741 1.59935 1.91805 1.77267 1.23427 0.94867 1.02192 0.97171 1.21373 1.02246 0.89321 1.04858 1.21044 0.92462 0.99092 1.00286 1.20114 0.94414 0.94706 1.02355 1.25313 1.02307 1.02231 0.89472 1.86574 1.37414 1.95578 1.16305 0.93961 0.77244 0.72370 0.88271 1.21022 1.00520 0.90527 1.04935 0.91547 0.87114 0.91953 0.85525 0.85265 0.74075 0.88084 0.89603 0.89467 0.89562 0.90828 0.88017 0.80726 0.82535 0.86044 0.76455 1.23624 1.19954 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 9.81 113.37 1.11 1.16 16 2 O -0.33 -3.66 10.28 -79.67 -0.82 -4.48 16 3 C 0.08 0.60 6.70 22.57 0.15 0.75 16 4 C 0.09 0.45 6.70 22.57 0.15 0.60 16 5 O -0.31 -2.59 9.45 -67.05 -0.63 -3.23 16 6 C 0.04 -0.10 5.22 71.23 0.37 0.27 16 7 C 0.51 1.67 7.91 87.65 0.69 2.37 16 8 O -0.57 -9.00 16.12 16.02 0.26 -8.74 16 9 N -0.69 2.96 5.26 -440.04 -2.32 0.64 16 10 C 0.11 -0.26 4.30 45.52 0.20 -0.06 16 11 H 0.08 0.27 7.50 -2.39 -0.02 0.25 16 12 C -0.13 0.75 7.33 31.12 0.23 0.98 16 13 C -0.14 0.94 4.00 -10.17 -0.04 0.90 16 14 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 15 C 0.06 -0.32 7.33 71.98 0.53 0.20 16 16 F -0.24 -0.47 17.30 44.97 0.78 0.30 16 17 C -0.14 0.67 7.45 31.21 0.23 0.90 16 18 C -0.16 0.45 9.04 22.35 0.20 0.66 16 19 C -0.11 0.38 8.66 22.27 0.19 0.58 16 20 C -0.12 0.02 5.35 -19.86 -0.11 -0.08 16 21 C -0.09 0.13 2.80 71.24 0.20 0.33 16 22 O -0.55 -1.07 12.83 -148.98 -1.91 -2.98 16 23 Si 0.78 -3.26 29.88 68.60 2.05 -1.21 16 24 C -0.15 -0.53 8.67 22.35 0.19 -0.34 16 25 H 0.07 -0.02 7.68 -2.38 -0.02 -0.04 16 26 H 0.11 -0.03 8.14 -2.38 -0.02 -0.05 16 27 H 0.06 0.03 7.65 -2.38 -0.02 0.01 16 28 H 0.13 -1.25 7.66 -2.38 -0.02 -1.26 16 29 H 0.13 -1.29 7.66 -2.39 -0.02 -1.31 16 30 H 0.42 -5.00 8.70 -92.71 -0.81 -5.80 16 31 H 0.10 -0.57 8.10 -2.39 -0.02 -0.59 16 32 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.09 -0.65 8.14 -2.38 -0.02 -0.67 16 34 H 0.09 -0.62 8.05 -2.39 -0.02 -0.64 16 35 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 36 H 0.10 -0.58 8.04 -2.39 -0.02 -0.60 16 37 H 0.18 -1.94 6.30 -2.91 -0.02 -1.95 16 38 H 0.16 -1.36 4.83 -2.91 -0.01 -1.38 16 39 H 0.12 -0.33 7.96 -2.39 -0.02 -0.35 16 40 H 0.39 -1.44 8.70 -74.06 -0.64 -2.08 16 41 H -0.31 -1.33 7.11 99.48 0.71 -0.62 16 42 H -0.27 0.50 7.00 99.48 0.70 1.20 16 43 H 0.14 0.29 6.30 -2.91 -0.02 0.27 16 Total: 0.00 -29.32 362.36 1.35 -27.97 By element: Atomic # 1 Polarization: -17.14 SS G_CDS: -0.36 Total: -17.50 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.31 Total: 9.21 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -2.32 Total: 0.64 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -3.11 Total: -19.42 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.78 Total: 0.30 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.05 Total: -1.21 kcal Total: -29.32 1.35 -27.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15781660_60476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.403 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds