Wall clock time and date at job start Sun Mar 7 2021 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99960 * 2 1 4 4 C 1.38713 * 120.05858 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.02535 * 0.04386 * 4 3 2 6 6 H 1.09000 * 112.84868 * 348.80284 * 5 4 3 7 7 C 1.53781 * 113.61274 * 120.00355 * 5 4 3 8 8 C 1.53784 * 87.07799 * 139.97989 * 7 5 4 9 9 H 1.09005 * 113.61201 * 219.92718 * 8 7 5 10 10 N 1.46501 * 113.61242 * 89.11787 * 8 7 5 11 11 C 1.34783 * 120.00062 * 154.99675 * 10 8 7 12 12 O 1.21282 * 119.99717 * 0.02562 * 11 10 8 13 13 C 1.50693 * 120.00369 * 179.97438 * 11 10 8 14 14 C 1.53004 * 109.46857 * 300.00289 * 13 11 10 15 15 O 1.42895 * 109.47393 * 180.02562 * 13 11 10 16 16 C 1.35898 * 116.99937 * 204.94830 * 15 13 11 17 17 C 1.38740 * 120.05383 * 174.27895 * 16 15 13 18 18 C 1.38140 * 119.94102 * 179.70420 * 17 16 15 19 19 C 1.38268 * 120.05957 * 0.58624 * 18 17 16 20 20 C 1.50699 * 119.94885 * 179.70331 * 19 18 17 21 21 O 1.42896 * 109.47188 * 244.98340 * 20 19 18 22 22 Si 1.86302 * 109.46833 * 4.98346 * 20 19 18 23 23 C 1.38265 * 120.10755 * 359.68607 * 19 18 17 24 24 C 1.38144 * 120.05729 * 0.02562 * 23 19 18 25 25 C 1.53773 * 87.08355 * 334.56501 * 8 7 5 26 26 C 1.38166 * 119.94458 * 180.02562 * 4 3 2 27 27 C 1.38242 * 120.05605 * 359.73872 * 26 4 3 28 28 C 1.38283 * 120.11142 * 0.51626 * 27 26 4 29 29 C 1.38129 * 120.05464 * 359.48532 * 28 27 26 30 30 H 1.08990 * 109.46989 * 299.99548 * 1 2 3 31 31 H 1.08998 * 109.47556 * 59.99861 * 1 2 3 32 32 H 1.09006 * 109.46783 * 179.97438 * 1 2 3 33 33 H 1.08999 * 113.60923 * 254.52666 * 7 5 4 34 34 H 1.08998 * 113.61422 * 25.43058 * 7 5 4 35 35 H 0.96998 * 120.00431 * 334.99163 * 10 8 7 36 36 H 1.08996 * 109.47331 * 59.99531 * 13 11 10 37 37 H 1.09004 * 109.47257 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.47172 * 299.99523 * 14 13 11 39 39 H 1.08995 * 109.47712 * 59.99985 * 14 13 11 40 40 H 1.08000 * 120.02652 * 359.97438 * 17 16 15 41 41 H 1.08001 * 119.97377 * 180.31600 * 18 17 16 42 42 H 1.08995 * 109.47190 * 124.97817 * 20 19 18 43 43 H 0.96701 * 114.00513 * 59.99867 * 21 20 19 44 44 H 1.48500 * 110.00393 * 58.67761 * 22 20 19 45 45 H 1.48503 * 109.99830 * 180.02562 * 22 20 19 46 46 H 1.08003 * 119.97153 * 179.97438 * 23 19 18 47 47 H 1.08005 * 120.02744 * 179.97438 * 24 23 19 48 48 H 1.09000 * 113.61521 * 270.88622 * 25 8 7 49 49 H 1.09003 * 113.61501 * 139.98115 * 25 8 7 50 50 H 1.08001 * 119.96742 * 179.97438 * 26 4 3 51 51 H 1.08000 * 119.94318 * 180.25684 * 27 26 4 52 52 H 1.07996 * 119.97700 * 179.76578 * 28 27 26 53 53 H 1.08003 * 120.02290 * 180.28038 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4311 1.2849 0.0005 5 6 4.2537 0.0222 0.0001 6 1 3.6591 -0.8704 0.1945 7 6 5.1808 -0.1086 -1.2199 8 6 6.2407 -0.6671 -0.2557 9 1 7.2501 -0.3116 -0.4630 10 7 6.1730 -2.1209 -0.0875 11 6 7.2715 -2.8082 0.2833 12 8 8.3159 -2.2231 0.4781 13 6 7.2019 -4.3035 0.4568 14 6 6.1711 -4.6443 1.5350 15 8 8.4836 -4.7976 0.8507 16 6 8.7615 -6.0951 0.5570 17 6 10.0273 -6.6072 0.8025 18 6 10.3055 -7.9281 0.5088 19 6 9.3273 -8.7363 -0.0406 20 6 9.6355 -10.1750 -0.3662 21 8 9.5572 -10.3709 -1.7795 22 14 11.3528 -10.5912 0.2242 23 6 8.0667 -8.2267 -0.2914 24 6 7.7817 -6.9081 0.0060 25 6 5.5263 0.1158 0.8584 26 6 4.0559 2.5172 0.0011 27 6 3.3018 3.6758 -0.0044 28 6 1.9208 3.6048 0.0004 29 6 1.2914 2.3752 -0.0001 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 4.8342 -0.8342 -1.9557 34 1 5.4554 0.8481 -1.6641 35 1 5.3377 -2.5888 -0.2430 36 1 6.9079 -4.7654 -0.4856 37 1 6.1210 -5.7259 1.6609 38 1 6.4651 -4.1824 2.4776 39 1 5.1934 -4.2674 1.2351 40 1 10.7932 -5.9750 1.2269 41 1 11.2892 -8.3287 0.7044 42 1 8.9135 -10.8228 0.1310 43 1 10.1734 -9.8252 -2.2870 44 1 11.4565 -10.3611 1.6876 45 1 11.6691 -12.0074 -0.0915 46 1 7.3044 -8.8598 -0.7209 47 1 6.7969 -6.5104 -0.1905 48 1 5.8955 1.1339 0.9823 49 1 5.4587 -0.4286 1.8003 50 1 5.1343 2.5753 0.0019 51 1 3.7921 4.6381 -0.0082 52 1 1.3338 4.5113 -0.0001 53 1 0.2127 2.3203 -0.0010 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_10157680.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:10 Heat of formation + Delta-G solvation = -49.888052 kcal Electronic energy + Delta-G solvation = -34364.820133 eV Core-core repulsion = 29749.120211 eV Total energy + Delta-G solvation = -4615.699923 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.182 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.99100 -41.50677 -40.73040 -39.63098 -38.86003 -38.02283 -37.13785 -34.95475 -33.18623 -32.07653 -31.79633 -31.20771 -31.04658 -28.15895 -26.81222 -26.69415 -26.34795 -25.28177 -24.15385 -23.16992 -22.71484 -22.38473 -21.50291 -20.18891 -19.48304 -19.11346 -18.54606 -18.15496 -17.49190 -17.17360 -16.87864 -16.65122 -16.63603 -16.60196 -16.38972 -15.96284 -15.72417 -15.61495 -15.35845 -15.32063 -15.08241 -14.80135 -14.72048 -14.34624 -14.29984 -14.24028 -14.04427 -13.73738 -13.47082 -13.37836 -13.32120 -13.13240 -12.99301 -12.92298 -12.75733 -12.30118 -12.17263 -12.15100 -12.06812 -12.01975 -11.76372 -11.69181 -11.64457 -11.17072 -10.95338 -10.40390 -10.19028 -10.04633 -9.76110 -9.23055 -9.07148 -4.99064 0.24356 0.32161 0.34596 0.48952 1.33535 1.35569 1.47983 1.64459 1.96828 2.38161 2.46368 2.64935 2.76196 3.40385 3.46878 3.57315 3.63887 3.66564 3.69969 3.73764 3.81328 3.86162 3.92205 3.92684 4.00208 4.10583 4.19684 4.26492 4.32637 4.34667 4.37131 4.45944 4.48869 4.51285 4.55677 4.60119 4.64155 4.66599 4.70544 4.74003 4.79098 4.83382 4.93896 4.99028 5.01006 5.06450 5.10333 5.15817 5.18321 5.28660 5.40679 5.44356 5.48129 5.59113 5.65183 5.68099 5.85555 6.24682 6.42097 6.44231 6.79163 7.06179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.103 0.897 7 C -0.123 4.123 8 C 0.117 3.883 9 H 0.088 0.912 10 N -0.691 5.691 11 C 0.520 3.480 12 O -0.566 6.566 13 C 0.066 3.934 14 C -0.173 4.173 15 O -0.311 6.311 16 C 0.119 3.881 17 C -0.159 4.159 18 C -0.075 4.075 19 C -0.162 4.162 20 C -0.064 4.064 21 O -0.556 6.556 22 Si 0.765 3.235 23 C -0.057 4.057 24 C -0.208 4.208 25 C -0.142 4.142 26 C -0.087 4.087 27 C -0.164 4.164 28 C -0.094 4.094 29 C -0.218 4.218 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.418 0.582 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.108 0.892 43 H 0.395 0.605 44 H -0.288 1.288 45 H -0.299 1.299 46 H 0.138 0.862 47 H 0.153 0.847 48 H 0.099 0.901 49 H 0.066 0.934 50 H 0.143 0.857 51 H 0.138 0.862 52 H 0.139 0.861 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 1.457 -2.625 6.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.116 4.116 5 C -0.075 4.075 6 H 0.121 0.879 7 C -0.161 4.161 8 C 0.012 3.988 9 H 0.107 0.893 10 N -0.345 5.345 11 C 0.306 3.694 12 O -0.444 6.444 13 C 0.006 3.994 14 C -0.230 4.230 15 O -0.224 6.224 16 C 0.074 3.926 17 C -0.177 4.177 18 C -0.092 4.092 19 C -0.162 4.162 20 C -0.174 4.174 21 O -0.364 6.364 22 Si 0.672 3.328 23 C -0.076 4.076 24 C -0.227 4.227 25 C -0.180 4.180 26 C -0.105 4.105 27 C -0.182 4.182 28 C -0.112 4.112 29 C -0.237 4.237 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.121 0.879 35 H 0.256 0.744 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.125 0.875 43 H 0.245 0.755 44 H -0.215 1.215 45 H -0.227 1.227 46 H 0.156 0.844 47 H 0.171 0.829 48 H 0.117 0.883 49 H 0.085 0.915 50 H 0.160 0.840 51 H 0.156 0.844 52 H 0.157 0.843 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.811 0.907 -1.698 5.182 hybrid contribution -1.407 0.103 0.266 1.436 sum -6.219 1.010 -1.432 6.461 Atomic orbital electron populations 1.23275 0.76949 1.05359 1.01876 1.86007 1.22815 1.26751 1.88703 1.19082 0.92274 0.84691 0.97151 1.19240 0.90273 0.95996 1.06109 1.21350 0.93618 0.95478 0.97044 0.87909 1.23381 0.94053 1.02539 0.96117 1.21856 1.00016 0.79422 0.97496 0.89342 1.45417 1.12523 1.07436 1.69080 1.20505 0.83642 0.89245 0.76037 1.90748 1.31455 1.71409 1.50760 1.22379 0.83825 0.91063 1.02118 1.22375 0.98332 1.04351 0.97967 1.86184 1.35484 1.24630 1.76130 1.19280 0.94659 0.83005 0.95637 1.20603 0.95161 0.96377 1.05596 1.20973 0.99133 0.92328 0.96780 1.20344 0.95119 0.96906 1.03868 1.25008 1.12188 0.94127 0.86119 1.86458 1.65936 1.67914 1.16079 0.93809 0.79107 0.80293 0.79579 1.20991 0.96315 0.94429 0.95815 1.21517 1.00255 0.95128 1.05760 1.23572 0.95321 1.01447 0.97659 1.21104 1.00834 0.90945 0.97575 1.21353 0.94155 0.99247 1.03410 1.21254 0.95180 0.97600 0.97141 1.21496 1.00904 0.92487 1.08763 0.92235 0.92073 0.86508 0.89598 0.87925 0.74419 0.85603 0.89641 0.92090 0.87416 0.84586 0.83254 0.87476 0.75534 1.21520 1.22714 0.84376 0.82934 0.88263 0.91539 0.83964 0.84397 0.84313 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.46 9.43 -92.39 -0.87 -1.33 16 3 C 0.11 0.30 6.66 22.51 0.15 0.45 16 4 C -0.12 -0.16 5.30 -19.77 -0.10 -0.26 16 5 C -0.06 0.10 3.75 -11.01 -0.04 0.06 16 6 H 0.10 -0.20 7.32 -2.39 -0.02 -0.22 16 7 C -0.12 0.45 7.29 31.12 0.23 0.68 16 8 C 0.12 -0.08 4.32 45.52 0.20 0.11 16 9 H 0.09 0.32 7.46 -2.38 -0.02 0.30 16 10 N -0.69 1.55 5.16 -440.03 -2.27 -0.72 16 11 C 0.52 2.32 7.23 87.65 0.63 2.96 16 12 O -0.57 -8.61 16.10 16.00 0.26 -8.35 16 13 C 0.07 -0.01 2.64 29.85 0.08 0.07 16 14 C -0.17 0.83 9.07 71.98 0.65 1.48 16 15 O -0.31 -2.20 9.33 -73.37 -0.68 -2.89 16 16 C 0.12 0.51 6.60 22.51 0.15 0.65 16 17 C -0.16 -0.57 9.99 22.37 0.22 -0.35 16 18 C -0.07 -0.03 8.66 22.25 0.19 0.17 16 19 C -0.16 -0.06 5.35 -19.85 -0.11 -0.17 16 20 C -0.06 0.03 2.80 71.24 0.20 0.23 16 21 O -0.56 -0.04 12.83 -148.98 -1.91 -1.95 16 22 Si 0.77 -1.06 29.80 68.60 2.04 0.99 16 23 C -0.06 -0.01 9.68 22.25 0.22 0.21 16 24 C -0.21 0.02 8.24 22.36 0.18 0.21 16 25 C -0.14 0.14 7.25 31.12 0.23 0.37 16 26 C -0.09 -0.01 8.61 22.25 0.19 0.19 16 27 C -0.16 -0.01 10.04 22.28 0.22 0.22 16 28 C -0.09 -0.03 10.04 22.25 0.22 0.19 16 29 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16 30 H 0.06 -0.33 7.66 -2.39 -0.02 -0.35 16 31 H 0.06 -0.36 7.66 -2.39 -0.02 -0.37 16 32 H 0.12 -0.97 8.14 -2.38 -0.02 -0.99 16 33 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 34 H 0.10 -0.42 7.72 -2.39 -0.02 -0.43 16 35 H 0.42 -3.62 8.12 -92.71 -0.75 -4.37 16 36 H 0.13 -0.72 6.31 -2.39 -0.02 -0.73 16 37 H 0.08 -0.48 6.91 -2.38 -0.02 -0.50 16 38 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.11 -1.15 7.56 -2.39 -0.02 -1.17 16 40 H 0.14 0.40 8.06 -2.91 -0.02 0.37 16 41 H 0.15 -0.61 4.90 -2.91 -0.01 -0.63 16 42 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 43 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 44 H -0.29 -1.09 7.11 99.48 0.71 -0.38 16 45 H -0.30 -1.81 7.11 99.48 0.71 -1.10 16 46 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 47 H 0.15 -0.84 5.43 -2.91 -0.02 -0.86 16 48 H 0.10 -0.17 6.31 -2.39 -0.02 -0.19 16 49 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 50 H 0.14 -0.48 6.66 -2.91 -0.02 -0.50 16 51 H 0.14 -0.48 8.06 -2.91 -0.02 -0.50 16 52 H 0.14 -0.49 8.06 -2.91 -0.02 -0.51 16 53 H 0.14 -0.32 6.30 -2.91 -0.02 -0.34 16 Total: 0.00 -24.93 427.05 1.20 -23.74 By element: Atomic # 1 Polarization: -17.52 SS G_CDS: -0.40 Total: -17.92 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.03 Total: 8.44 kcal Atomic # 7 Polarization: 1.55 SS G_CDS: -2.27 Total: -0.72 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -3.21 Total: -14.52 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.04 Total: 0.99 kcal Total: -24.93 1.20 -23.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_10157680.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.153 kcal (2) G-P(sol) polarization free energy of solvation -24.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds