Wall clock time and date at job start Sun Mar 7 2021 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99940 * 2 1 4 4 C 1.38712 * 120.05375 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.03008 * 0.02562 * 4 3 2 6 6 H 1.09004 * 112.84479 * 348.52884 * 5 4 3 7 7 C 1.53778 * 113.61086 * 119.72066 * 5 4 3 8 8 C 1.53787 * 87.08035 * 140.06661 * 7 5 4 9 9 H 1.08994 * 113.61447 * 220.02014 * 8 7 5 10 10 N 1.46496 * 113.61210 * 89.11438 * 8 7 5 11 11 C 1.34774 * 120.00099 * 155.00440 * 10 8 7 12 12 O 1.21699 * 119.99730 * 359.97438 * 11 10 8 13 13 C 1.46676 * 120.00622 * 180.02562 * 11 10 8 14 14 C 1.37871 * 126.23625 * 180.02562 * 13 11 10 15 15 C 1.39845 * 107.08442 * 179.97438 * 14 13 11 16 16 C 1.50702 * 126.06623 * 180.02562 * 15 14 13 17 17 O 1.42899 * 109.47281 * 64.99549 * 16 15 14 18 18 Si 1.86294 * 109.46843 * 184.99878 * 16 15 14 19 19 C 1.35457 * 107.86331 * 359.97438 * 15 14 13 20 20 N 1.35536 * 108.87011 * 359.73929 * 19 15 14 21 21 C 1.53778 * 113.69101 * 217.25842 * 5 4 3 22 22 C 1.38169 * 119.93952 * 179.72676 * 4 3 2 23 23 C 1.38240 * 120.05948 * 0.23074 * 22 4 3 24 24 C 1.38297 * 120.10954 * 0.02562 * 23 22 4 25 25 C 1.38118 * 120.05471 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47654 * 300.00082 * 1 2 3 27 27 H 1.09006 * 109.47087 * 59.99842 * 1 2 3 28 28 H 1.08997 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.08998 * 113.61879 * 25.52144 * 7 5 4 30 30 H 1.08997 * 113.69304 * 254.62230 * 7 5 4 31 31 H 0.97002 * 120.00490 * 335.00104 * 10 8 7 32 32 H 1.08000 * 126.45910 * 0.02562 * 14 13 11 33 33 H 1.09004 * 109.46794 * 304.99808 * 16 15 14 34 34 H 0.96701 * 114.00105 * 59.99927 * 17 16 15 35 35 H 1.48498 * 110.00303 * 58.67958 * 18 16 15 36 36 H 1.48506 * 109.99749 * 180.02562 * 18 16 15 37 37 H 1.07997 * 125.55683 * 180.02562 * 19 15 14 38 38 H 0.96994 * 125.66948 * 180.30598 * 20 19 15 39 39 H 1.08993 * 113.61229 * 105.46294 * 21 5 4 40 40 H 1.09000 * 113.61263 * 334.55944 * 21 5 4 41 41 H 1.08001 * 119.96754 * 180.25681 * 22 4 3 42 42 H 1.08000 * 119.94526 * 180.02562 * 23 22 4 43 43 H 1.07997 * 119.96969 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.02543 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 0.0005 5 6 4.2538 0.0222 0.0005 6 1 3.6598 -0.8699 0.1999 7 6 5.1757 -0.1123 -1.2228 8 6 6.2389 -0.6701 -0.2618 9 1 7.2475 -0.3149 -0.4729 10 7 6.1702 -2.1233 -0.0903 11 6 7.2692 -2.8112 0.2776 12 8 8.3188 -2.2251 0.4669 13 6 7.2007 -4.2663 0.4488 14 6 8.2397 -5.0931 0.8200 15 6 7.7334 -6.3960 0.8609 16 6 8.5081 -7.6380 1.2195 17 8 8.9226 -7.5632 2.5850 18 14 7.4260 -9.1354 0.9801 19 6 6.4230 -6.3435 0.5220 20 7 6.0854 -5.0542 0.2752 21 6 5.5298 0.1161 0.8536 22 6 4.0559 2.5172 -0.0052 23 6 3.3019 3.6758 -0.0066 24 6 1.9208 3.6048 -0.0018 25 6 1.2914 2.3753 0.0050 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 5.4498 0.8432 -1.6702 30 1 4.8266 -0.8386 -1.9567 31 1 5.3337 -2.5906 -0.2415 32 1 9.2533 -4.7913 1.0388 33 1 9.3853 -7.7171 0.5773 34 1 8.1921 -7.4908 3.2144 35 1 6.9623 -9.2071 -0.4288 36 1 8.1782 -10.3669 1.3311 37 1 5.7551 -7.1901 0.4631 38 1 5.2050 -4.7396 0.0170 39 1 5.4653 -0.4263 1.7968 40 1 5.9006 1.1340 0.9739 41 1 5.1344 2.5752 -0.0090 42 1 3.7922 4.6381 -0.0115 43 1 1.3339 4.5114 -0.0025 44 1 0.2128 2.3204 0.0092 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_10543058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:15 Heat of formation + Delta-G solvation = -1.561868 kcal Electronic energy + Delta-G solvation = -27074.110969 eV Core-core repulsion = 23153.064287 eV Total energy + Delta-G solvation = -3921.046683 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.51322 -41.65995 -40.60853 -39.24755 -38.04328 -37.62708 -34.79316 -32.59623 -31.88798 -31.05875 -30.60878 -28.16620 -26.85066 -26.72544 -26.00244 -24.29265 -23.06316 -22.56747 -21.31107 -20.81277 -20.33285 -19.80954 -19.05742 -17.57334 -17.46219 -17.15048 -16.75109 -16.69182 -16.63138 -16.41568 -15.88685 -15.66416 -15.37030 -15.20059 -15.16157 -14.76388 -14.63156 -14.37848 -14.28329 -14.01572 -13.92748 -13.50996 -13.47407 -13.17212 -12.99863 -12.77175 -12.30860 -12.26115 -12.02665 -11.96935 -11.80059 -11.68772 -11.34706 -11.19329 -10.32743 -10.27761 -9.95756 -9.77551 -9.29268 -9.08247 -4.92645 0.32864 0.35007 0.47965 1.42444 1.52567 1.74558 1.89433 2.09911 2.12940 2.22944 2.37258 2.75042 3.43539 3.64551 3.65321 3.70014 3.79143 3.90579 3.97611 3.98987 4.08870 4.17377 4.18161 4.31902 4.36619 4.36916 4.44912 4.47556 4.60261 4.66189 4.69419 4.73179 4.76819 4.79096 4.88832 4.92006 4.98036 5.02933 5.08827 5.12759 5.39080 5.41940 5.57096 5.59025 5.63880 5.72916 5.84473 6.33242 6.43198 6.51104 6.91624 7.03073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.114 3.886 4 C -0.117 4.117 5 C -0.055 4.055 6 H 0.102 0.898 7 C -0.123 4.123 8 C 0.116 3.884 9 H 0.090 0.910 10 N -0.697 5.697 11 C 0.591 3.409 12 O -0.575 6.575 13 C -0.070 4.070 14 C -0.104 4.104 15 C -0.228 4.228 16 C -0.053 4.053 17 O -0.566 6.566 18 Si 0.803 3.197 19 C 0.062 3.938 20 N -0.515 5.515 21 C -0.141 4.141 22 C -0.087 4.087 23 C -0.164 4.164 24 C -0.093 4.093 25 C -0.217 4.217 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.411 0.589 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.393 0.607 35 H -0.274 1.274 36 H -0.310 1.310 37 H 0.218 0.782 38 H 0.437 0.563 39 H 0.065 0.935 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 -0.635 -0.921 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.161 4.161 8 C 0.011 3.989 9 H 0.108 0.892 10 N -0.348 5.348 11 C 0.380 3.620 12 O -0.454 6.454 13 C -0.183 4.183 14 C -0.131 4.131 15 C -0.235 4.235 16 C -0.162 4.162 17 O -0.374 6.374 18 Si 0.708 3.292 19 C -0.076 4.076 20 N -0.113 5.113 21 C -0.180 4.180 22 C -0.105 4.105 23 C -0.182 4.182 24 C -0.111 4.111 25 C -0.236 4.236 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.247 0.753 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.243 0.757 35 H -0.201 1.201 36 H -0.239 1.239 37 H 0.235 0.765 38 H 0.278 0.722 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.937 -1.050 -1.540 10.110 hybrid contribution -0.121 0.755 -0.302 0.822 sum -10.057 -0.295 -1.843 10.229 Atomic orbital electron populations 1.23283 0.76909 1.05400 1.01884 1.86005 1.22844 1.26700 1.88700 1.19074 0.92219 0.84742 0.97130 1.19229 0.90320 0.95938 1.06248 1.21319 0.93570 0.95486 0.96907 0.88010 1.23382 0.94115 1.02528 0.96091 1.21870 1.00146 0.79317 0.97568 0.89227 1.45381 1.12138 1.07721 1.69524 1.17262 0.83594 0.85223 0.75949 1.90847 1.31249 1.70215 1.53074 1.20076 0.89533 0.90368 1.18341 1.21231 0.98038 0.92786 1.01082 1.19960 0.95342 0.95196 1.12983 1.24751 1.03212 1.03098 0.85139 1.86458 1.38564 1.96813 1.15538 0.93927 0.82698 0.71624 0.80923 1.22409 0.96065 0.87311 1.01799 1.41871 1.10810 1.06440 1.52146 1.23572 0.95341 1.01455 0.97599 1.21103 1.00830 0.90970 0.97573 1.21358 0.94187 0.99224 1.03408 1.21262 0.95150 0.97644 0.97069 1.21494 1.00926 0.92441 1.08701 0.92214 0.92103 0.86426 0.87869 0.89780 0.75275 0.85917 0.89182 0.75693 1.20087 1.23857 0.76537 0.72188 0.91648 0.88144 0.84019 0.84394 0.84260 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.29 9.43 -92.46 -0.87 -1.17 16 3 C 0.11 0.28 6.66 22.51 0.15 0.43 16 4 C -0.12 -0.17 5.30 -19.77 -0.10 -0.27 16 5 C -0.05 0.09 3.74 -11.02 -0.04 0.04 16 6 H 0.10 -0.19 7.33 -2.38 -0.02 -0.21 16 7 C -0.12 0.38 7.29 31.12 0.23 0.61 16 8 C 0.12 0.03 4.32 45.52 0.20 0.23 16 9 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 10 N -0.70 0.44 5.26 -444.00 -2.33 -1.90 16 11 C 0.59 4.11 7.79 86.45 0.67 4.79 16 12 O -0.57 -9.56 16.48 -4.35 -0.07 -9.63 16 13 C -0.07 -0.25 7.06 40.35 0.28 0.04 16 14 C -0.10 -0.75 10.59 22.57 0.24 -0.51 16 15 C -0.23 -0.22 5.43 -20.12 -0.11 -0.33 16 16 C -0.05 -0.06 3.02 71.24 0.22 0.16 16 17 O -0.57 -1.84 12.88 -148.98 -1.92 -3.76 16 18 Si 0.80 -3.47 30.60 68.60 2.10 -1.37 16 19 C 0.06 -0.39 10.45 83.48 0.87 0.49 16 20 N -0.52 3.05 5.99 -183.62 -1.10 1.95 16 21 C -0.14 0.06 7.26 31.12 0.23 0.28 16 22 C -0.09 -0.02 8.61 22.25 0.19 0.17 16 23 C -0.16 -0.01 10.04 22.28 0.22 0.21 16 24 C -0.09 -0.02 10.04 22.26 0.22 0.21 16 25 C -0.22 -0.20 9.04 22.36 0.20 0.00 16 26 H 0.06 -0.36 7.65 -2.39 -0.02 -0.38 16 27 H 0.06 -0.39 7.67 -2.38 -0.02 -0.40 16 28 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 29 H 0.10 -0.36 7.72 -2.39 -0.02 -0.38 16 30 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.41 -3.02 7.83 -92.71 -0.73 -3.74 16 32 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.09 0.38 7.96 -2.39 -0.02 0.37 16 34 H 0.39 -2.22 8.70 -74.06 -0.64 -2.86 16 35 H -0.27 0.36 7.11 99.48 0.71 1.07 16 36 H -0.31 -1.48 7.11 99.48 0.71 -0.78 16 37 H 0.22 -3.22 6.21 -2.91 -0.02 -3.24 16 38 H 0.44 -5.89 8.19 -92.71 -0.76 -6.65 16 39 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.10 -0.13 6.32 -2.39 -0.02 -0.15 16 41 H 0.14 -0.44 6.67 -2.91 -0.02 -0.46 16 42 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 43 H 0.14 -0.52 8.06 -2.91 -0.02 -0.54 16 44 H 0.14 -0.38 6.30 -2.91 -0.02 -0.40 16 Total: 0.00 -26.74 365.93 -0.44 -27.18 By element: Atomic # 1 Polarization: -17.84 SS G_CDS: -1.02 Total: -18.86 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.78 Total: 7.55 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -3.43 Total: 0.06 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -2.86 Total: -14.56 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.10 Total: -1.37 kcal Total: -26.74 -0.44 -27.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_10543058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.617 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds