Wall clock time and date at job start Sun Mar 7 2021 05:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35905 * 116.99743 * 2 1 4 4 C 1.38709 * 120.05136 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.03266 * 359.95113 * 4 3 2 6 6 H 1.09006 * 112.90309 * 348.74643 * 5 4 3 7 7 C 1.53774 * 113.61884 * 119.99969 * 5 4 3 8 8 C 1.53771 * 87.08261 * 139.98176 * 7 5 4 9 9 H 1.09003 * 113.62075 * 220.01631 * 8 7 5 10 10 N 1.46504 * 113.61232 * 89.11910 * 8 7 5 11 11 C 1.34782 * 119.99726 * 155.00256 * 10 8 7 12 12 O 1.21690 * 120.00471 * 354.28630 * 11 10 8 13 13 C 1.46680 * 119.99640 * 174.29005 * 11 10 8 14 14 C 1.37874 * 126.23463 * 4.29425 * 13 11 10 15 15 C 1.39840 * 107.08501 * 179.97438 * 14 13 11 16 16 C 1.50695 * 126.06506 * 179.97438 * 15 14 13 17 17 O 1.42900 * 109.47131 * 65.00361 * 16 15 14 18 18 Si 1.86300 * 109.47092 * 185.00003 * 16 15 14 19 19 C 1.35446 * 107.86099 * 0.02562 * 15 14 13 20 20 N 1.35529 * 108.87928 * 359.76493 * 19 15 14 21 21 C 1.46501 * 125.68116 * 180.26550 * 20 19 15 22 22 C 1.53779 * 87.08444 * 334.57059 * 8 7 5 23 23 C 1.38166 * 119.94282 * 180.22904 * 4 3 2 24 24 C 1.38248 * 120.05254 * 359.46846 * 23 4 3 25 25 C 1.38285 * 120.11235 * 0.55369 * 24 23 4 26 26 C 1.38127 * 120.05692 * 359.69909 * 25 24 23 27 27 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46906 * 300.00372 * 1 2 3 29 29 H 1.08991 * 109.47254 * 59.99750 * 1 2 3 30 30 H 1.09003 * 113.61768 * 254.53418 * 7 5 4 31 31 H 1.09010 * 113.61368 * 25.43097 * 7 5 4 32 32 H 0.96995 * 120.00392 * 334.99881 * 10 8 7 33 33 H 1.08002 * 126.45676 * 0.02562 * 14 13 11 34 34 H 1.08997 * 109.47151 * 305.00031 * 16 15 14 35 35 H 0.96698 * 114.00057 * 59.99837 * 17 16 15 36 36 H 1.48508 * 109.99795 * 58.68042 * 18 16 15 37 37 H 1.48495 * 110.00154 * 179.97438 * 18 16 15 38 38 H 1.08006 * 125.56002 * 180.02562 * 19 15 14 39 39 H 1.08999 * 109.46936 * 264.43354 * 21 20 19 40 40 H 1.08997 * 109.46958 * 24.43205 * 21 20 19 41 41 H 1.08998 * 109.46732 * 144.43620 * 21 20 19 42 42 H 1.09004 * 113.61458 * 270.88615 * 22 8 7 43 43 H 1.08994 * 113.69240 * 139.98918 * 22 8 7 44 44 H 1.07993 * 119.97477 * 179.74499 * 23 4 3 45 45 H 1.08003 * 119.94388 * 180.25285 * 24 23 4 46 46 H 1.08000 * 119.97500 * 179.72571 * 25 24 23 47 47 H 1.07995 * 120.03150 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2538 0.0222 0.0000 6 1 3.6603 -0.8707 0.1967 7 6 5.1799 -0.1102 -1.2204 8 6 6.2405 -0.6675 -0.2565 9 1 7.2495 -0.3111 -0.4639 10 7 6.1730 -2.1210 -0.0864 11 6 7.2717 -2.8079 0.2845 12 8 8.3430 -2.2382 0.3772 13 6 7.1762 -4.2422 0.5764 14 6 6.0536 -5.0298 0.4337 15 6 6.4089 -6.3255 0.8218 16 6 5.5014 -7.5285 0.8327 17 8 5.1105 -7.8425 -0.5054 18 14 6.4041 -8.9806 1.5728 19 6 7.7130 -6.3069 1.1871 20 7 8.1923 -5.0480 1.0380 21 6 9.5629 -4.6161 1.3228 22 6 5.5269 0.1168 0.8573 23 6 4.0560 2.5171 0.0043 24 6 3.3019 3.6758 -0.0015 25 6 1.9209 3.6048 -0.0006 26 6 1.2914 2.3753 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.8329 -0.8367 -1.9552 31 1 5.4543 0.8460 -1.6661 32 1 5.3376 -2.5891 -0.2407 33 1 5.0831 -4.7072 0.0868 34 1 4.6152 -7.3097 1.4284 35 1 5.8502 -8.0483 -1.0932 36 1 6.8439 -8.6551 2.9534 37 1 5.5197 -10.1733 1.5899 38 1 8.2798 -7.1575 1.5360 39 1 9.6110 -4.2000 2.3291 40 1 10.2355 -5.4707 1.2505 41 1 9.8618 -3.8563 0.6008 42 1 5.8962 1.1351 0.9797 43 1 5.4595 -0.4252 1.8005 44 1 5.1344 2.5752 0.0080 45 1 3.7922 4.6381 -0.0019 46 1 1.3339 4.5114 -0.0006 47 1 0.2128 2.3203 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_10803934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:18 Heat of formation + Delta-G solvation = 6.910507 kcal Electronic energy + Delta-G solvation = -29427.868125 eV Core-core repulsion = 25351.651213 eV Total energy + Delta-G solvation = -4076.216912 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.58173 -41.66639 -40.59089 -39.21491 -38.04865 -37.63692 -34.92677 -33.74489 -32.06817 -31.06026 -30.64665 -28.34205 -28.15225 -26.71575 -26.34421 -25.63130 -24.08986 -23.04258 -22.53291 -21.28266 -20.66250 -19.98209 -19.12735 -18.79367 -17.81215 -17.36508 -17.01483 -16.78044 -16.71820 -16.66515 -16.53619 -15.88407 -15.64222 -15.46820 -15.36645 -15.15050 -15.05762 -14.81104 -14.39437 -14.30662 -14.07677 -14.02415 -13.49890 -13.48408 -13.25001 -13.20845 -13.10819 -12.99541 -12.77021 -12.30122 -12.26324 -12.03527 -11.93204 -11.78183 -11.66750 -11.20657 -11.16639 -10.30136 -10.19731 -9.77264 -9.71311 -9.27215 -9.08375 -4.94299 0.33478 0.37786 0.48013 1.42380 1.51856 1.55947 1.74345 2.05260 2.24232 2.29292 2.37235 2.75343 3.44852 3.60178 3.65569 3.69255 3.75132 3.83874 3.91140 3.98281 4.03886 4.09503 4.18322 4.25188 4.30531 4.34801 4.36200 4.39520 4.44670 4.47925 4.61508 4.66388 4.68543 4.71435 4.72639 4.76873 4.77175 4.83081 4.92790 4.99080 5.09319 5.14790 5.18903 5.40013 5.44169 5.57612 5.62779 5.68069 5.85080 5.86806 6.16806 6.41803 6.43283 6.91189 7.07241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.111 3.889 4 C -0.116 4.116 5 C -0.058 4.058 6 H 0.095 0.905 7 C -0.124 4.124 8 C 0.121 3.879 9 H 0.095 0.905 10 N -0.692 5.692 11 C 0.590 3.410 12 O -0.580 6.580 13 C -0.080 4.080 14 C -0.113 4.113 15 C -0.221 4.221 16 C -0.038 4.038 17 O -0.560 6.560 18 Si 0.782 3.218 19 C 0.038 3.962 20 N -0.412 5.412 21 C 0.064 3.936 22 C -0.140 4.140 23 C -0.086 4.086 24 C -0.162 4.162 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.114 0.886 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.393 0.607 36 H -0.284 1.284 37 H -0.305 1.305 38 H 0.205 0.795 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -0.518 -1.124 1.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.066 3.934 4 C -0.117 4.117 5 C -0.076 4.076 6 H 0.114 0.886 7 C -0.162 4.162 8 C 0.016 3.984 9 H 0.113 0.887 10 N -0.342 5.342 11 C 0.380 3.620 12 O -0.462 6.462 13 C -0.192 4.192 14 C -0.140 4.140 15 C -0.227 4.227 16 C -0.149 4.149 17 O -0.368 6.368 18 Si 0.688 3.312 19 C -0.099 4.099 20 N -0.084 5.084 21 C -0.077 4.077 22 C -0.179 4.179 23 C -0.103 4.103 24 C -0.180 4.180 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.170 0.830 34 H 0.117 0.883 35 H 0.243 0.757 36 H -0.211 1.211 37 H -0.233 1.233 38 H 0.221 0.779 39 H 0.095 0.905 40 H 0.138 0.862 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.789 -0.612 -0.104 1.004 hybrid contribution -1.339 0.598 0.201 1.480 sum -0.550 -0.013 0.097 0.558 Atomic orbital electron populations 1.23272 0.76955 1.05267 1.01944 1.86025 1.22852 1.26914 1.88722 1.19123 0.92344 0.84707 0.97254 1.19243 0.90274 0.95990 1.06197 1.21317 0.93734 0.95362 0.97220 0.88642 1.23383 0.94184 1.02546 0.96055 1.21850 1.00239 0.79017 0.97341 0.88655 1.45249 1.12470 1.07531 1.68989 1.17174 0.83849 0.85059 0.75958 1.90773 1.28774 1.71450 1.55227 1.20022 0.90619 0.92001 1.16591 1.21407 0.97202 0.92765 1.02598 1.19902 0.95041 0.96351 1.11402 1.24492 1.00727 1.00807 0.88832 1.86443 1.38303 1.91297 1.20763 0.93982 0.83809 0.73669 0.79692 1.22362 0.95091 0.87717 1.04766 1.44035 1.10114 1.07594 1.46610 1.22413 0.78599 1.03465 1.03178 1.23580 0.95272 1.01530 0.97474 1.21107 1.00906 0.90801 0.97528 1.21368 0.94116 0.99250 1.03309 1.21265 0.95226 0.97541 0.97084 1.21489 1.00885 0.92448 1.08754 0.86740 0.92141 0.91942 0.90121 0.87532 0.75026 0.83002 0.88274 0.75725 1.21057 1.23266 0.77897 0.90493 0.86195 0.89775 0.87769 0.91909 0.83767 0.84174 0.84169 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.33 -1.39 9.43 -92.48 -0.87 -2.26 16 3 C 0.11 0.53 6.66 22.51 0.15 0.68 16 4 C -0.12 -0.39 5.30 -19.77 -0.10 -0.49 16 5 C -0.06 -0.06 3.75 -11.02 -0.04 -0.10 16 6 H 0.10 0.23 7.33 -2.38 -0.02 0.21 16 7 C -0.12 0.13 7.29 31.11 0.23 0.36 16 8 C 0.12 0.19 4.36 45.51 0.20 0.39 16 9 H 0.10 0.42 7.41 -2.39 -0.02 0.40 16 10 N -0.69 -1.64 5.25 -444.00 -2.33 -3.97 16 11 C 0.59 4.42 7.77 86.45 0.67 5.09 16 12 O -0.58 -7.68 14.36 -4.32 -0.06 -7.75 16 13 C -0.08 -0.42 6.89 40.35 0.28 -0.14 16 14 C -0.11 -0.32 10.29 22.57 0.23 -0.09 16 15 C -0.22 -0.17 5.43 -20.12 -0.11 -0.28 16 16 C -0.04 0.01 3.02 71.23 0.22 0.23 16 17 O -0.56 -0.40 12.88 -148.98 -1.92 -2.32 16 18 Si 0.78 -2.45 30.60 68.60 2.10 -0.35 16 19 C 0.04 -0.06 9.92 83.48 0.83 0.77 16 20 N -0.41 -0.95 3.16 -534.32 -1.69 -2.64 16 21 C 0.06 -0.07 10.47 127.77 1.34 1.27 16 22 C -0.14 -0.13 7.25 31.12 0.23 0.09 16 23 C -0.09 -0.10 8.62 22.26 0.19 0.10 16 24 C -0.16 -0.13 10.04 22.28 0.22 0.10 16 25 C -0.09 -0.12 10.04 22.25 0.22 0.11 16 26 C -0.22 -0.57 9.04 22.37 0.20 -0.36 16 27 H 0.11 -0.64 8.14 -2.39 -0.02 -0.65 16 28 H 0.06 -0.21 7.66 -2.38 -0.02 -0.23 16 29 H 0.06 -0.24 7.66 -2.39 -0.02 -0.26 16 30 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.11 -0.26 7.73 -2.38 -0.02 -0.28 16 32 H 0.41 -0.52 7.60 -92.71 -0.70 -1.23 16 33 H 0.15 0.02 7.45 -2.91 -0.02 -0.01 16 34 H 0.10 0.15 7.96 -2.39 -0.02 0.13 16 35 H 0.39 -2.83 8.70 -74.06 -0.64 -3.47 16 36 H -0.28 -0.38 7.11 99.48 0.71 0.33 16 37 H -0.30 -1.54 7.11 99.48 0.71 -0.83 16 38 H 0.20 -1.78 6.21 -2.91 -0.02 -1.80 16 39 H 0.08 -0.08 8.14 -2.39 -0.02 -0.09 16 40 H 0.12 -0.97 8.12 -2.39 -0.02 -0.99 16 41 H 0.08 0.27 6.57 -2.39 -0.02 0.25 16 42 H 0.10 -0.10 6.30 -2.38 -0.02 -0.11 16 43 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.14 -0.40 6.64 -2.91 -0.02 -0.42 16 45 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 47 H 0.14 -0.13 6.30 -2.91 -0.02 -0.15 16 Total: 0.00 -21.54 384.18 0.99 -20.55 By element: Atomic # 1 Polarization: -9.74 SS G_CDS: -0.30 Total: -10.03 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.06 Total: 8.78 kcal Atomic # 7 Polarization: -2.60 SS G_CDS: -4.02 Total: -6.62 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -2.85 Total: -12.32 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.10 Total: -0.35 kcal Total: -21.54 0.99 -20.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_10803934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.456 kcal (2) G-P(sol) polarization free energy of solvation -21.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds