Wall clock time and date at job start Sun Mar 7 2021 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 117.00196 * 2 1 4 4 C 1.38711 * 120.06074 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.02484 * 359.94929 * 4 3 2 6 6 H 1.09001 * 112.85044 * 348.80589 * 5 4 3 7 7 C 1.53779 * 113.61224 * 120.00029 * 5 4 3 8 8 C 1.53784 * 87.08011 * 139.98495 * 7 5 4 9 9 H 1.09007 * 113.61079 * 219.93801 * 8 7 5 10 10 N 1.46498 * 113.61709 * 89.11539 * 8 7 5 11 11 C 1.34775 * 119.99878 * 154.72477 * 10 8 7 12 12 O 1.21695 * 120.00222 * 355.23316 * 11 10 8 13 13 C 1.46677 * 120.00244 * 175.23093 * 11 10 8 14 14 C 1.37870 * 126.22897 * 4.96627 * 13 11 10 15 15 C 1.39832 * 107.08711 * 179.97438 * 14 13 11 16 16 C 1.35452 * 107.86336 * 359.97438 * 15 14 13 17 17 C 1.50700 * 125.56715 * 180.02562 * 16 15 14 18 18 O 1.42896 * 109.47539 * 149.97792 * 17 16 15 19 19 Si 1.86303 * 109.47101 * 29.97628 * 17 16 15 20 20 N 1.35538 * 108.87016 * 359.77219 * 16 15 14 21 21 C 1.46500 * 125.67535 * 180.26513 * 20 16 15 22 22 C 1.53775 * 113.61595 * 217.49953 * 5 4 3 23 23 C 1.38162 * 119.94653 * 180.22546 * 4 3 2 24 24 C 1.38241 * 120.05306 * 359.52028 * 23 4 3 25 25 C 1.38287 * 120.11587 * 0.45663 * 24 23 4 26 26 C 1.38125 * 120.05210 * 359.79089 * 25 24 23 27 27 H 1.09005 * 109.46724 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47285 * 300.00247 * 1 2 3 29 29 H 1.08998 * 109.47001 * 60.00476 * 1 2 3 30 30 H 1.08997 * 113.61873 * 25.43579 * 7 5 4 31 31 H 1.09002 * 113.69571 * 254.53988 * 7 5 4 32 32 H 0.97000 * 119.99733 * 335.00350 * 10 8 7 33 33 H 1.08000 * 126.45976 * 359.91878 * 14 13 11 34 34 H 1.08002 * 126.07398 * 179.97438 * 15 14 13 35 35 H 1.09000 * 109.47286 * 269.97586 * 17 16 15 36 36 H 0.96708 * 114.00236 * 300.00400 * 18 17 16 37 37 H 1.48494 * 110.00067 * 179.97438 * 19 17 16 38 38 H 1.48499 * 110.00127 * 301.32078 * 19 17 16 39 39 H 1.09001 * 109.47322 * 275.92612 * 21 20 16 40 40 H 1.08995 * 109.47495 * 35.93225 * 21 20 16 41 41 H 1.09005 * 109.47079 * 155.92924 * 21 20 16 42 42 H 1.09001 * 113.61732 * 105.47322 * 22 5 4 43 43 H 1.09002 * 113.61391 * 334.56739 * 22 5 4 44 44 H 1.07998 * 119.97137 * 179.74162 * 23 4 3 45 45 H 1.08010 * 119.94319 * 180.20971 * 24 23 4 46 46 H 1.07993 * 119.97352 * 179.77605 * 25 24 23 47 47 H 1.08001 * 120.02950 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.2538 0.0222 0.0000 6 1 3.6593 -0.8702 0.1959 7 6 5.1799 -0.1102 -1.2205 8 6 6.2406 -0.6676 -0.2565 9 1 7.2498 -0.3122 -0.4649 10 7 6.1730 -2.1211 -0.0864 11 6 7.2731 -2.8087 0.2790 12 8 8.3418 -2.2361 0.3834 13 6 7.1823 -4.2471 0.5511 14 6 6.0669 -5.0397 0.3815 15 6 6.4243 -6.3380 0.7582 16 6 7.7231 -6.3165 1.1422 17 6 8.5141 -7.5049 1.6252 18 8 9.8908 -7.3314 1.2838 19 14 7.8643 -9.0530 0.8178 20 7 8.1967 -5.0529 1.0160 21 6 9.5606 -4.6168 1.3257 22 6 5.5270 0.1168 0.8572 23 6 4.0560 2.5171 0.0042 24 6 3.3019 3.6757 -0.0006 25 6 1.9209 3.6048 -0.0006 26 6 1.2914 2.3753 -0.0001 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 5.4544 0.8459 -1.6661 31 1 4.8340 -0.8363 -1.9562 32 1 5.3375 -2.5892 -0.2407 33 1 5.0992 -4.7182 0.0256 34 1 5.7794 -7.2042 0.7452 35 1 8.4162 -7.5909 2.7074 36 1 10.0530 -7.2475 0.3341 37 1 8.6365 -10.2321 1.2854 38 1 6.4251 -9.2278 1.1392 39 1 9.6412 -4.4056 2.3920 40 1 10.2639 -5.4049 1.0572 41 1 9.7914 -3.7151 0.7583 42 1 5.4601 -0.4265 1.7998 43 1 5.8963 1.1350 0.9796 44 1 5.1344 2.5752 0.0080 45 1 3.7923 4.6381 -0.0003 46 1 1.3340 4.5113 -0.0006 47 1 0.2128 2.3203 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_10803936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:21 Heat of formation + Delta-G solvation = 10.304948 kcal Electronic energy + Delta-G solvation = -29449.716186 eV Core-core repulsion = 25373.646468 eV Total energy + Delta-G solvation = -4076.069718 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.162 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.64494 -41.66158 -40.60350 -39.22518 -38.03573 -37.78158 -34.91709 -33.68418 -32.10973 -31.09335 -31.03654 -28.17367 -27.56634 -27.13478 -26.69578 -25.79483 -23.56507 -22.99858 -22.55472 -21.58868 -20.60990 -20.04455 -19.12115 -18.80268 -18.09526 -17.42704 -17.08844 -16.93299 -16.65922 -16.64213 -16.23007 -16.01600 -15.57131 -15.43842 -15.34719 -15.06291 -14.93601 -14.80902 -14.53497 -14.40385 -14.29916 -14.01058 -13.70348 -13.47642 -13.23244 -13.12065 -13.03198 -12.97130 -12.74432 -12.28729 -12.18081 -12.02222 -12.01522 -11.76202 -11.64543 -11.18929 -11.14500 -10.66059 -10.18419 -9.77648 -9.75890 -9.13180 -9.06636 -4.90516 0.32965 0.35403 0.49372 1.17857 1.47518 1.72271 1.75305 2.02915 2.28281 2.33141 2.39022 2.76655 3.27851 3.46907 3.54733 3.64184 3.67408 3.76007 3.92645 3.98768 4.00371 4.11201 4.19823 4.30872 4.32668 4.32922 4.37338 4.40279 4.46284 4.49322 4.54033 4.62982 4.70171 4.73886 4.76007 4.79183 4.85177 4.94909 5.01001 5.02649 5.10638 5.11790 5.18391 5.41300 5.45999 5.59225 5.65158 5.71560 5.86221 5.95360 6.11624 6.44324 6.44991 6.56017 7.09541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.112 3.888 4 C -0.116 4.116 5 C -0.057 4.057 6 H 0.099 0.901 7 C -0.123 4.123 8 C 0.120 3.880 9 H 0.093 0.907 10 N -0.688 5.688 11 C 0.590 3.410 12 O -0.583 6.583 13 C -0.080 4.080 14 C -0.125 4.125 15 C -0.213 4.213 16 C 0.015 3.985 17 C -0.058 4.058 18 O -0.553 6.553 19 Si 0.812 3.188 20 N -0.401 5.401 21 C 0.055 3.945 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.163 4.163 25 C -0.093 4.093 26 C -0.217 4.217 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.396 0.604 37 H -0.294 1.294 38 H -0.274 1.274 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 -0.604 -3.577 5.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.067 3.933 4 C -0.117 4.117 5 C -0.075 4.075 6 H 0.117 0.883 7 C -0.161 4.161 8 C 0.015 3.985 9 H 0.111 0.889 10 N -0.339 5.339 11 C 0.380 3.620 12 O -0.465 6.465 13 C -0.193 4.193 14 C -0.151 4.151 15 C -0.237 4.237 16 C -0.104 4.104 17 C -0.167 4.167 18 O -0.361 6.361 19 Si 0.714 3.286 20 N -0.074 5.074 21 C -0.086 4.086 22 C -0.180 4.180 23 C -0.104 4.104 24 C -0.181 4.181 25 C -0.111 4.111 26 C -0.236 4.236 27 H 0.134 0.866 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.253 0.747 33 H 0.188 0.812 34 H 0.180 0.820 35 H 0.130 0.870 36 H 0.247 0.753 37 H -0.221 1.221 38 H -0.200 1.200 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.555 -1.028 -2.655 4.555 hybrid contribution -0.663 0.667 0.813 1.243 sum -4.217 -0.361 -1.842 4.616 Atomic orbital electron populations 1.23277 0.76946 1.05335 1.01894 1.86019 1.22836 1.26800 1.88692 1.19102 0.92294 0.84724 0.97166 1.19244 0.90303 0.95981 1.06161 1.21323 0.93642 0.95419 0.97112 0.88298 1.23378 0.94061 1.02555 0.96060 1.21854 1.00203 0.79073 0.97402 0.88902 1.45199 1.12314 1.07413 1.68974 1.17180 0.83852 0.85089 0.75906 1.90757 1.29205 1.71484 1.55103 1.20136 0.90877 0.91830 1.16491 1.21640 0.97601 0.92774 1.03095 1.20906 0.94586 0.99120 1.09060 1.21410 0.95989 0.86049 1.06905 1.25231 0.84220 1.02631 1.04571 1.86453 1.22773 1.95419 1.31469 0.92925 0.76396 0.70400 0.88834 1.43910 1.10273 1.06548 1.46623 1.22593 0.80021 1.03787 1.02186 1.23584 0.95436 1.01448 0.97527 1.21102 1.00864 0.90878 0.97568 1.21359 0.94150 0.99231 1.03396 1.21258 0.95188 0.97578 0.97116 1.21493 1.00898 0.92449 1.08751 0.86585 0.92227 0.91989 0.87692 0.89787 0.74736 0.81194 0.82015 0.87005 0.75347 1.22115 1.19967 0.91788 0.86149 0.89255 0.91952 0.87962 0.83887 0.84299 0.84235 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -0.96 9.43 -92.41 -0.87 -1.83 16 3 C 0.11 0.44 6.66 22.51 0.15 0.59 16 4 C -0.12 -0.30 5.30 -19.77 -0.10 -0.41 16 5 C -0.06 0.00 3.75 -11.02 -0.04 -0.04 16 6 H 0.10 0.08 7.33 -2.39 -0.02 0.06 16 7 C -0.12 0.25 7.29 31.12 0.23 0.47 16 8 C 0.12 0.13 4.36 45.52 0.20 0.32 16 9 H 0.09 0.41 7.41 -2.38 -0.02 0.39 16 10 N -0.69 -0.98 5.25 -443.99 -2.33 -3.31 16 11 C 0.59 4.48 7.77 86.45 0.67 5.16 16 12 O -0.58 -8.30 14.12 -4.33 -0.06 -8.36 16 13 C -0.08 -0.45 6.89 40.35 0.28 -0.18 16 14 C -0.12 -0.12 10.35 22.57 0.23 0.11 16 15 C -0.21 -0.14 9.37 22.01 0.21 0.06 16 16 C 0.01 0.03 6.15 41.34 0.25 0.28 16 17 C -0.06 0.07 2.99 71.24 0.21 0.28 16 18 O -0.55 0.89 10.11 -148.98 -1.51 -0.62 16 19 Si 0.81 -3.34 31.29 68.60 2.15 -1.19 16 20 N -0.40 -2.09 3.16 -519.71 -1.64 -3.74 16 21 C 0.05 0.23 10.30 127.77 1.32 1.55 16 22 C -0.14 -0.09 7.25 31.12 0.23 0.14 16 23 C -0.09 -0.07 8.62 22.25 0.19 0.12 16 24 C -0.16 -0.09 10.04 22.28 0.22 0.13 16 25 C -0.09 -0.08 10.04 22.25 0.22 0.14 16 26 C -0.22 -0.43 9.04 22.37 0.20 -0.23 16 27 H 0.12 -0.81 8.14 -2.38 -0.02 -0.83 16 28 H 0.06 -0.27 7.66 -2.39 -0.02 -0.28 16 29 H 0.06 -0.30 7.66 -2.39 -0.02 -0.32 16 30 H 0.10 -0.32 7.73 -2.39 -0.02 -0.34 16 31 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.42 -1.40 7.60 -92.71 -0.70 -2.11 16 33 H 0.17 -0.87 7.45 -2.91 -0.02 -0.89 16 34 H 0.16 -0.45 6.62 -2.91 -0.02 -0.47 16 35 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 36 H 0.40 -3.48 8.29 -74.05 -0.61 -4.09 16 37 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 38 H -0.27 0.13 6.76 99.48 0.67 0.80 16 39 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.12 -0.02 5.24 -2.39 -0.01 -0.03 16 41 H 0.09 0.69 5.92 -2.38 -0.01 0.67 16 42 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.10 -0.09 6.30 -2.39 -0.02 -0.11 16 44 H 0.14 -0.40 6.64 -2.91 -0.02 -0.42 16 45 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 46 H 0.14 -0.43 8.06 -2.91 -0.02 -0.46 16 47 H 0.14 -0.22 6.30 -2.91 -0.02 -0.24 16 Total: 0.00 -19.74 378.03 1.22 -18.51 By element: Atomic # 1 Polarization: -8.72 SS G_CDS: -0.29 Total: -9.01 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.78 Total: 9.54 kcal Atomic # 7 Polarization: -3.08 SS G_CDS: -3.97 Total: -7.05 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -2.44 Total: -10.80 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.15 Total: -1.19 kcal Total: -19.74 1.22 -18.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_10803936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.819 kcal (2) G-P(sol) polarization free energy of solvation -19.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds