Wall clock time and date at job start Sun Mar 7 2021 05:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 117.00071 * 2 1 4 4 C 1.38705 * 120.05826 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.02478 * 0.02562 * 4 3 2 6 6 H 1.08998 * 112.85166 * 348.52391 * 5 4 3 7 7 C 1.53780 * 113.61370 * 119.72675 * 5 4 3 8 8 C 1.53777 * 87.08203 * 140.06422 * 7 5 4 9 9 H 1.09001 * 113.61257 * 219.93444 * 8 7 5 10 10 N 1.46496 * 113.61861 * 89.11535 * 8 7 5 11 11 C 1.34777 * 120.00258 * 156.53091 * 10 8 7 12 12 O 1.21690 * 120.00222 * 359.97438 * 11 10 8 13 13 C 1.46676 * 119.99963 * 179.97438 * 11 10 8 14 14 C 1.37874 * 126.23351 * 180.02562 * 13 11 10 15 15 C 1.50695 * 126.45809 * 359.97213 * 14 13 11 16 16 C 1.39834 * 107.08673 * 180.02562 * 14 13 11 17 17 C 1.50700 * 126.06972 * 180.02562 * 16 14 13 18 18 O 1.42893 * 109.47225 * 29.99166 * 17 16 14 19 19 Si 1.86299 * 109.47314 * 149.99483 * 17 16 14 20 20 C 1.35453 * 107.86668 * 359.97438 * 16 14 13 21 21 C 1.50701 * 125.56879 * 180.02562 * 20 16 14 22 22 N 1.35539 * 108.87124 * 359.73869 * 20 16 14 23 23 C 1.53775 * 87.17460 * 334.52027 * 8 7 5 24 24 C 1.38169 * 119.94626 * 179.72205 * 4 3 2 25 25 C 1.38237 * 120.05570 * 0.27859 * 24 4 3 26 26 C 1.38285 * 120.11033 * 359.97438 * 25 24 4 27 27 C 1.38123 * 120.06071 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46729 * 299.99815 * 1 2 3 29 29 H 1.08995 * 109.47126 * 59.99911 * 1 2 3 30 30 H 1.09000 * 109.47211 * 180.02562 * 1 2 3 31 31 H 1.08996 * 113.61741 * 25.50855 * 7 5 4 32 32 H 1.09004 * 113.68547 * 254.61946 * 7 5 4 33 33 H 0.96999 * 119.99694 * 336.52481 * 10 8 7 34 34 H 1.09001 * 109.46662 * 90.02887 * 15 14 13 35 35 H 1.08998 * 109.47546 * 210.02390 * 15 14 13 36 36 H 1.08998 * 109.47234 * 330.03335 * 15 14 13 37 37 H 1.09002 * 109.46896 * 269.99279 * 17 16 14 38 38 H 0.96702 * 113.99682 * 60.00117 * 18 17 16 39 39 H 1.48504 * 109.99909 * 179.97438 * 19 17 16 40 40 H 1.48502 * 109.99988 * 301.31564 * 19 17 16 41 41 H 1.08997 * 109.47237 * 90.00143 * 21 20 16 42 42 H 1.08996 * 109.47428 * 210.00691 * 21 20 16 43 43 H 1.09001 * 109.46660 * 330.00146 * 21 20 16 44 44 H 0.96993 * 125.68415 * 180.28600 * 22 20 16 45 45 H 1.08999 * 113.61562 * 140.02002 * 23 8 7 46 46 H 1.09003 * 113.61852 * 270.93148 * 23 8 7 47 47 H 1.07999 * 119.96912 * 180.25229 * 24 4 3 48 48 H 1.07998 * 119.94433 * 179.97438 * 25 24 4 49 49 H 1.08005 * 119.97043 * 179.97438 * 26 25 24 50 50 H 1.07993 * 120.03252 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0221 -0.0017 6 1 3.6601 -0.8700 0.1978 7 6 5.1748 -0.1119 -1.2258 8 6 6.2386 -0.6701 -0.2658 9 1 7.2474 -0.3160 -0.4784 10 7 6.1701 -2.1234 -0.0948 11 6 7.2615 -2.8075 0.3019 12 8 8.3041 -2.2180 0.5176 13 6 7.1927 -4.2625 0.4737 14 6 8.2244 -5.0858 0.8723 15 6 9.6296 -4.6602 1.2116 16 6 7.7213 -6.3902 0.9014 17 6 8.4903 -7.6294 1.2811 18 8 9.5047 -7.2891 2.2282 19 14 7.3281 -8.8744 2.0362 20 6 6.4199 -6.3421 0.5289 21 6 5.4939 -7.5264 0.4237 22 7 6.0847 -5.0542 0.2721 23 6 5.5328 0.1157 0.8518 24 6 4.0560 2.5171 -0.0063 25 6 3.3020 3.6757 -0.0058 26 6 1.9209 3.6047 0.0000 27 6 1.2914 2.3753 0.0058 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 5.4485 0.8437 -1.6730 32 1 4.8250 -0.8380 -1.9597 33 1 5.3392 -2.5934 -0.2670 34 1 9.6924 -4.4288 2.2749 35 1 10.3214 -5.4684 0.9742 36 1 9.8915 -3.7755 0.6312 37 1 8.9526 -8.0569 0.3914 38 1 9.1647 -6.9022 3.0467 39 1 8.0742 -10.1014 2.4144 40 1 6.6673 -8.2923 3.2320 41 1 4.9944 -7.6830 1.3798 42 1 4.7487 -7.3375 -0.3489 43 1 6.0690 -8.4152 0.1643 44 1 5.2104 -4.7424 -0.0093 45 1 5.4707 -0.4271 1.7950 46 1 5.9042 1.1335 0.9716 47 1 5.1344 2.5751 -0.0109 48 1 3.7923 4.6380 -0.0099 49 1 1.3340 4.5114 0.0009 50 1 0.2129 2.3203 0.0108 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_12297754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:29 Heat of formation + Delta-G solvation = -9.357239 kcal Electronic energy + Delta-G solvation = -31652.753307 eV Core-core repulsion = 27420.293353 eV Total energy + Delta-G solvation = -4232.459953 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.177 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.69427 -41.68076 -40.62509 -39.24455 -38.05177 -37.86061 -34.85055 -33.66812 -33.03805 -31.79913 -31.06856 -29.26660 -28.22220 -27.64065 -26.73700 -26.58261 -25.71946 -23.31320 -22.81308 -22.40686 -20.80586 -20.53582 -20.00932 -19.44050 -19.01481 -17.64783 -17.45443 -17.02398 -16.80613 -16.67330 -16.62784 -16.46125 -15.97609 -15.78954 -15.38030 -15.24079 -15.13454 -14.91707 -14.65825 -14.40926 -14.27868 -14.07201 -14.00772 -13.77942 -13.68317 -13.50375 -13.22290 -13.21666 -13.11532 -13.00286 -12.78118 -12.59478 -12.32714 -12.31584 -12.03754 -11.82995 -11.80116 -11.68435 -11.20172 -11.19456 -10.60987 -10.24250 -9.78441 -9.53301 -9.09413 -8.97698 -4.76611 0.32127 0.34704 0.46972 1.23674 1.67313 1.70425 1.91247 2.06843 2.12492 2.24185 2.36195 2.74074 3.42574 3.44891 3.63914 3.65924 3.81238 3.83728 3.89752 3.96706 3.97254 4.07967 4.17001 4.22279 4.30750 4.35720 4.43905 4.46546 4.51572 4.60706 4.65319 4.66524 4.68223 4.71903 4.75880 4.78029 4.78875 4.85777 4.87659 4.91662 4.96604 5.07844 5.09946 5.13592 5.22799 5.31810 5.38506 5.43482 5.57077 5.62920 5.70253 5.82860 5.83624 6.36647 6.42194 6.51195 6.60160 7.07372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.113 3.887 4 C -0.117 4.117 5 C -0.055 4.055 6 H 0.100 0.900 7 C -0.122 4.122 8 C 0.119 3.881 9 H 0.090 0.910 10 N -0.700 5.700 11 C 0.590 3.410 12 O -0.566 6.566 13 C -0.082 4.082 14 C -0.070 4.070 15 C -0.081 4.081 16 C -0.232 4.232 17 C -0.052 4.052 18 O -0.550 6.550 19 Si 0.760 3.240 20 C 0.086 3.914 21 C -0.110 4.110 22 N -0.518 5.518 23 C -0.142 4.142 24 C -0.087 4.087 25 C -0.163 4.163 26 C -0.093 4.093 27 C -0.217 4.217 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.380 0.620 39 H -0.305 1.305 40 H -0.293 1.293 41 H 0.101 0.899 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.433 0.567 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 -1.460 -3.531 11.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.118 4.118 5 C -0.073 4.073 6 H 0.118 0.882 7 C -0.160 4.160 8 C 0.014 3.986 9 H 0.108 0.892 10 N -0.351 5.351 11 C 0.380 3.620 12 O -0.445 6.445 13 C -0.194 4.194 14 C -0.079 4.079 15 C -0.138 4.138 16 C -0.238 4.238 17 C -0.160 4.160 18 O -0.357 6.357 19 Si 0.665 3.335 20 C -0.034 4.034 21 C -0.166 4.166 22 N -0.116 5.116 23 C -0.180 4.180 24 C -0.105 4.105 25 C -0.181 4.181 26 C -0.111 4.111 27 C -0.235 4.235 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.132 0.868 38 H 0.228 0.772 39 H -0.233 1.233 40 H -0.219 1.219 41 H 0.119 0.881 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.274 0.726 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.158 0.842 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.754 -1.786 -3.221 10.426 hybrid contribution -0.158 1.270 0.875 1.550 sum -9.911 -0.516 -2.346 10.198 Atomic orbital electron populations 1.23283 0.76897 1.05394 1.01898 1.86005 1.22863 1.26734 1.88704 1.19077 0.92221 0.84749 0.97157 1.19229 0.90328 0.95935 1.06263 1.21358 0.93541 0.95416 0.96969 0.88220 1.23366 0.94070 1.02544 0.96021 1.21836 1.00101 0.79321 0.97380 0.89202 1.45398 1.12984 1.07686 1.69029 1.17199 0.83547 0.85069 0.76200 1.90814 1.31064 1.69764 1.52819 1.19881 0.89653 0.90357 1.19511 1.19926 0.95197 0.92419 1.00327 1.20218 0.91782 1.00879 1.00900 1.19684 0.94924 0.94974 1.14191 1.24635 0.96093 0.99211 0.96110 1.86521 1.34752 1.83805 1.30576 0.94484 0.80545 0.74785 0.83664 1.20716 0.94861 0.86174 1.01622 1.20713 0.98244 0.91824 1.05780 1.41711 1.11330 1.05910 1.52666 1.23619 0.95469 1.01423 0.97516 1.21099 1.00828 0.90957 0.97574 1.21356 0.94188 0.99219 1.03387 1.21263 0.95149 0.97641 0.97051 1.21496 1.00924 0.92429 1.08697 0.92261 0.92017 0.86447 0.87800 0.89758 0.75539 0.92125 0.91244 0.92562 0.86800 0.77200 1.23345 1.21941 0.88061 0.86432 0.86399 0.72629 0.91986 0.88150 0.84024 0.84355 0.84219 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.46 9.43 -92.36 -0.87 -1.33 16 3 C 0.11 0.33 6.66 22.51 0.15 0.48 16 4 C -0.12 -0.22 5.30 -19.77 -0.10 -0.33 16 5 C -0.05 0.05 3.76 -10.92 -0.04 0.01 16 6 H 0.10 -0.09 7.33 -2.39 -0.02 -0.10 16 7 C -0.12 0.33 7.29 31.12 0.23 0.56 16 8 C 0.12 0.09 4.29 45.52 0.20 0.28 16 9 H 0.09 0.42 7.50 -2.39 -0.02 0.41 16 10 N -0.70 -0.17 5.26 -444.03 -2.34 -2.51 16 11 C 0.59 4.47 7.79 86.45 0.67 5.15 16 12 O -0.57 -8.98 14.42 -4.32 -0.06 -9.04 16 13 C -0.08 -0.41 7.06 40.35 0.28 -0.12 16 14 C -0.07 -0.55 6.15 -19.57 -0.12 -0.67 16 15 C -0.08 -0.84 8.72 71.23 0.62 -0.22 16 16 C -0.23 -0.61 5.38 -20.12 -0.11 -0.72 16 17 C -0.05 -0.09 3.00 71.24 0.21 0.12 16 18 O -0.55 -3.36 10.66 -148.98 -1.59 -4.94 16 19 Si 0.76 -1.42 26.76 68.60 1.84 0.41 16 20 C 0.09 -0.32 6.84 41.34 0.28 -0.04 16 21 C -0.11 1.40 8.21 71.24 0.59 1.99 16 22 N -0.52 1.91 5.99 -171.92 -1.03 0.88 16 23 C -0.14 -0.05 7.27 31.21 0.23 0.17 16 24 C -0.09 -0.05 8.61 22.25 0.19 0.15 16 25 C -0.16 -0.05 10.04 22.28 0.22 0.18 16 26 C -0.09 -0.04 10.04 22.25 0.22 0.19 16 27 C -0.22 -0.26 9.04 22.37 0.20 -0.06 16 28 H 0.06 -0.34 7.65 -2.39 -0.02 -0.36 16 29 H 0.06 -0.38 7.67 -2.39 -0.02 -0.39 16 30 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H 0.10 -0.35 7.72 -2.39 -0.02 -0.36 16 32 H 0.08 -0.35 8.14 -2.38 -0.02 -0.37 16 33 H 0.41 -2.45 7.83 -92.71 -0.73 -3.17 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.72 7.11 -2.39 -0.02 0.70 16 36 H 0.06 0.79 6.48 -2.39 -0.02 0.78 16 37 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 38 H 0.38 0.77 8.70 -74.06 -0.64 0.12 16 39 H -0.30 -1.94 7.11 99.48 0.71 -1.23 16 40 H -0.29 -0.96 7.11 99.48 0.71 -0.26 16 41 H 0.10 -1.42 7.13 -2.39 -0.02 -1.44 16 42 H 0.12 -2.06 8.14 -2.39 -0.02 -2.08 16 43 H 0.12 -1.80 5.17 -2.39 -0.01 -1.81 16 44 H 0.43 -4.79 8.19 -92.71 -0.76 -5.55 16 45 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.10 -0.07 6.33 -2.39 -0.02 -0.08 16 47 H 0.14 -0.39 6.67 -2.91 -0.02 -0.41 16 48 H 0.14 -0.45 8.06 -2.91 -0.02 -0.47 16 49 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 50 H 0.14 -0.35 6.30 -2.91 -0.02 -0.36 16 Total: 0.00 -25.53 394.58 -0.10 -25.62 By element: Atomic # 1 Polarization: -16.13 SS G_CDS: -1.08 Total: -17.22 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.04 Total: 8.12 kcal Atomic # 7 Polarization: 1.74 SS G_CDS: -3.37 Total: -1.62 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -2.52 Total: -15.31 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: 1.84 Total: 0.41 kcal Total: -25.53 -0.10 -25.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12297754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.265 kcal (2) G-P(sol) polarization free energy of solvation -25.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds