Wall clock time and date at job start Sun Mar 7 2021 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99372 * 2 1 4 4 C 1.38711 * 120.05193 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.02929 * 359.97438 * 4 3 2 6 6 H 1.09006 * 112.84739 * 10.92949 * 5 4 3 7 7 C 1.54051 * 113.69578 * 142.19164 * 5 4 3 8 8 C 1.53785 * 86.98409 * 139.99375 * 7 5 4 9 9 H 1.08994 * 113.61251 * 219.98446 * 8 7 5 10 10 N 1.46496 * 113.61490 * 89.16426 * 8 7 5 11 11 C 1.34772 * 120.00214 * 105.86395 * 10 8 7 12 12 O 1.21281 * 119.99940 * 359.97438 * 11 10 8 13 13 C 1.50703 * 120.00069 * 180.02562 * 11 10 8 14 14 C 1.50706 * 109.47001 * 179.97438 * 13 11 10 15 15 C 1.38233 * 120.00109 * 269.72485 * 14 13 11 16 16 C 1.38238 * 119.99749 * 179.78525 * 15 14 13 17 17 C 1.38234 * 120.00056 * 0.46903 * 16 15 14 18 18 C 1.50696 * 120.00189 * 179.78529 * 17 16 15 19 19 O 1.42904 * 109.46876 * 119.97813 * 18 17 16 20 20 Si 1.86295 * 109.46942 * 359.97438 * 18 17 16 21 21 C 1.38237 * 120.00048 * 359.76546 * 17 16 15 22 22 C 1.38235 * 120.00123 * 0.02562 * 21 17 16 23 23 C 1.53774 * 113.61904 * 239.72921 * 5 4 3 24 24 C 1.38163 * 119.94560 * 179.72211 * 4 3 2 25 25 C 1.38244 * 120.05174 * 0.27448 * 24 4 3 26 26 C 1.38285 * 120.11656 * 359.97438 * 25 24 4 27 27 C 1.38122 * 120.04956 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46995 * 299.99597 * 1 2 3 30 30 H 1.08996 * 109.46964 * 60.00110 * 1 2 3 31 31 H 1.08994 * 113.61297 * 25.49203 * 7 5 4 32 32 H 1.08995 * 113.69457 * 254.50760 * 7 5 4 33 33 H 0.97000 * 119.99972 * 285.86396 * 10 8 7 34 34 H 1.09000 * 109.46978 * 60.00374 * 13 11 10 35 35 H 1.09000 * 109.46976 * 299.99619 * 13 11 10 36 36 H 1.08004 * 119.99934 * 0.02562 * 15 14 13 37 37 H 1.07999 * 119.99919 * 180.25459 * 16 15 14 38 38 H 1.08999 * 109.47304 * 239.97813 * 18 17 16 39 39 H 0.96706 * 113.99427 * 180.02562 * 19 18 17 40 40 H 1.48496 * 110.00402 * 60.00011 * 20 18 17 41 41 H 1.48509 * 110.00172 * 181.31809 * 20 18 17 42 42 H 1.08000 * 120.00539 * 180.02562 * 21 17 16 43 43 H 1.07999 * 120.00181 * 179.97438 * 22 21 17 44 44 H 1.09007 * 113.61752 * 105.38178 * 23 5 4 45 45 H 1.09005 * 113.69151 * 334.49528 * 23 5 4 46 46 H 1.08002 * 119.97186 * 180.24714 * 24 4 3 47 47 H 1.08001 * 119.94063 * 179.97438 * 25 24 4 48 48 H 1.07992 * 119.97728 * 180.02562 * 26 25 24 49 49 H 1.08008 * 120.02479 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4311 1.2850 -0.0005 5 6 4.2538 0.0223 -0.0005 6 1 3.6584 -0.8708 -0.1906 7 6 5.5252 0.1118 -0.8658 8 6 6.2410 -0.6686 0.2494 9 1 7.2515 -0.3135 0.4513 10 7 6.1711 -2.1227 0.0859 11 6 7.2589 -2.8087 -0.3170 12 8 8.2957 -2.2221 -0.5448 13 6 7.1867 -4.3045 -0.4857 14 6 8.5261 -4.8238 -0.9412 15 6 8.8064 -4.9227 -2.2913 16 6 10.0366 -5.3949 -2.7090 17 6 10.9830 -5.7773 -1.7768 18 6 12.3224 -6.2967 -2.2322 19 8 13.3583 -5.4554 -1.7210 20 14 12.3867 -6.2997 -4.0941 21 6 10.7010 -5.6831 -0.4268 22 6 9.4724 -5.2068 -0.0090 23 6 5.1856 -0.1058 1.2160 24 6 4.0559 2.5173 -0.0063 25 6 3.3017 3.6759 -0.0059 26 6 1.9207 3.6049 -0.0001 27 6 1.2914 2.3753 0.0046 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.8955 1.1289 -0.9937 32 1 5.4548 -0.4355 -1.8057 33 1 5.3417 -2.5918 0.2677 34 1 6.4298 -4.5500 -1.2306 35 1 6.9227 -4.7651 0.4662 36 1 8.0656 -4.6273 -3.0196 37 1 10.2571 -5.4682 -3.7637 38 1 12.4632 -7.3122 -1.8622 39 1 14.2497 -5.7305 -1.9756 40 1 12.1959 -4.9209 -4.6112 41 1 13.6907 -6.8396 -4.5564 42 1 11.4405 -5.9815 0.3016 43 1 9.2519 -5.1335 1.0457 44 1 4.8413 -0.8288 1.9556 45 1 5.4639 0.8512 1.6573 46 1 5.1343 2.5754 -0.0108 47 1 3.7920 4.6382 -0.0100 48 1 1.3338 4.5114 -0.0002 49 1 0.2127 2.3203 0.0087 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15784314_12335836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:42 Heat of formation + Delta-G solvation = -21.410222 kcal Electronic energy + Delta-G solvation = -29900.712784 eV Core-core repulsion = 25760.467563 eV Total energy + Delta-G solvation = -4140.245220 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.166 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.76545 -41.05934 -40.31574 -39.26250 -38.06093 -37.74387 -34.61450 -34.06538 -31.94758 -31.87448 -31.05511 -29.75275 -28.14176 -26.69140 -26.40428 -25.42527 -23.80519 -23.21626 -22.69414 -22.18000 -21.31947 -20.09035 -19.10642 -18.59674 -18.16955 -17.62213 -17.30607 -16.92676 -16.86050 -16.69211 -16.64980 -16.20373 -15.96690 -15.37921 -15.31607 -15.29127 -15.09852 -14.68922 -14.65090 -14.37168 -14.29728 -14.00889 -13.97935 -13.50392 -13.40053 -13.22004 -13.17798 -12.97269 -12.85144 -12.74471 -12.30298 -12.25193 -12.01981 -11.91545 -11.76008 -11.74495 -11.63637 -11.15531 -10.99564 -10.53535 -10.06804 -9.86412 -9.76548 -9.58232 -9.07692 -4.96840 0.24147 0.33822 0.46474 0.48132 1.27649 1.56715 1.63274 1.93071 2.13877 2.38220 2.75266 2.75546 3.39551 3.48927 3.65063 3.67586 3.71400 3.85568 3.90859 3.92087 4.00224 4.05128 4.06745 4.10836 4.19106 4.32543 4.32808 4.37635 4.45461 4.46183 4.48774 4.50056 4.63360 4.65697 4.70920 4.73358 4.74105 4.78360 4.86111 4.96429 5.00920 5.03418 5.09770 5.09953 5.20332 5.38536 5.40303 5.50044 5.55040 5.59397 5.59702 5.68274 5.84854 6.02397 6.44103 6.56166 6.56748 7.28163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.329 6.329 3 C 0.114 3.886 4 C -0.116 4.116 5 C -0.054 4.054 6 H 0.102 0.898 7 C -0.142 4.142 8 C 0.118 3.882 9 H 0.081 0.919 10 N -0.702 5.702 11 C 0.514 3.486 12 O -0.581 6.581 13 C -0.096 4.096 14 C -0.072 4.072 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.092 4.092 18 C -0.088 4.088 19 O -0.561 6.561 20 Si 0.767 3.233 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.088 4.088 25 C -0.164 4.164 26 C -0.093 4.093 27 C -0.217 4.217 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.417 0.583 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.394 0.606 40 H -0.306 1.306 41 H -0.283 1.283 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.489 -3.552 0.697 8.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.068 3.932 4 C -0.117 4.117 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.181 4.181 8 C 0.012 3.988 9 H 0.100 0.900 10 N -0.354 5.354 11 C 0.302 3.698 12 O -0.460 6.460 13 C -0.136 4.136 14 C -0.073 4.073 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.092 4.092 18 C -0.196 4.196 19 O -0.371 6.371 20 Si 0.673 3.327 21 C -0.127 4.127 22 C -0.134 4.134 23 C -0.162 4.162 24 C -0.106 4.106 25 C -0.182 4.182 26 C -0.111 4.111 27 C -0.236 4.236 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.244 0.756 40 H -0.235 1.235 41 H -0.210 1.210 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.158 0.842 47 H 0.156 0.844 48 H 0.158 0.842 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.791 -2.751 0.096 7.328 hybrid contribution 0.666 0.599 0.591 1.074 sum -6.125 -2.152 0.687 6.528 Atomic orbital electron populations 1.23284 0.76894 1.05398 1.01898 1.86017 1.22877 1.26719 1.88689 1.19076 0.92223 0.84742 0.97118 1.19256 0.90365 0.95999 1.06094 1.21364 0.93541 0.95403 0.96961 0.87953 1.23599 0.95495 1.01265 0.97699 1.21758 0.99395 0.80528 0.97083 0.90043 1.45604 1.14266 1.06971 1.68551 1.21095 0.82777 0.90570 0.75332 1.90752 1.31819 1.72017 1.51386 1.20764 0.96173 0.89901 1.06719 1.19584 0.95894 0.98270 0.93527 1.21215 0.97155 0.98637 0.95790 1.21116 0.94347 0.99670 0.99182 1.19503 0.94435 1.00969 0.94292 1.25064 0.86548 0.96205 1.11797 1.86567 1.18734 1.55721 1.76033 0.94216 0.84373 0.81313 0.72820 1.21099 0.96849 0.99282 0.95427 1.21253 0.93364 0.98599 1.00160 1.23351 0.94334 1.02348 0.96153 1.21089 1.00741 0.91034 0.97688 1.21351 0.94217 0.99176 1.03470 1.21253 0.95106 0.97644 0.97107 1.21499 1.00938 0.92428 1.08696 0.86473 0.92051 0.92184 0.88722 0.91651 0.74560 0.84755 0.84977 0.83959 0.84431 0.88549 0.75578 1.23460 1.20980 0.85763 0.84784 0.89711 0.88333 0.84208 0.84420 0.84204 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.76 9.43 -92.48 -0.87 -1.63 16 3 C 0.11 0.41 6.66 22.50 0.15 0.56 16 4 C -0.12 -0.31 5.30 -19.77 -0.10 -0.41 16 5 C -0.05 0.02 3.76 -10.92 -0.04 -0.02 16 6 H 0.10 -0.03 7.32 -2.38 -0.02 -0.05 16 7 C -0.14 -0.10 7.27 31.21 0.23 0.13 16 8 C 0.12 0.10 4.29 45.52 0.20 0.30 16 9 H 0.08 0.47 7.50 -2.39 -0.02 0.45 16 10 N -0.70 1.11 5.26 -440.05 -2.32 -1.21 16 11 C 0.51 1.78 7.82 87.66 0.69 2.47 16 12 O -0.58 -8.42 15.65 -3.03 -0.05 -8.47 16 13 C -0.10 0.32 5.83 29.10 0.17 0.49 16 14 C -0.07 -0.25 4.37 -19.86 -0.09 -0.34 16 15 C -0.11 -0.43 9.70 22.27 0.22 -0.21 16 16 C -0.13 -0.64 8.67 22.27 0.19 -0.45 16 17 C -0.09 -0.61 5.42 -19.87 -0.11 -0.72 16 18 C -0.09 -0.28 2.81 71.23 0.20 -0.08 16 19 O -0.56 -3.63 12.74 -148.98 -1.90 -5.53 16 20 Si 0.77 0.85 29.79 68.60 2.04 2.89 16 21 C -0.11 -0.77 9.61 22.27 0.21 -0.55 16 22 C -0.12 -0.59 9.70 22.27 0.22 -0.38 16 23 C -0.12 0.25 7.28 31.12 0.23 0.47 16 24 C -0.09 -0.12 8.62 22.25 0.19 0.07 16 25 C -0.16 -0.17 10.04 22.28 0.22 0.05 16 26 C -0.09 -0.10 10.04 22.25 0.22 0.13 16 27 C -0.22 -0.40 9.04 22.36 0.20 -0.20 16 28 H 0.12 -0.92 8.14 -2.39 -0.02 -0.94 16 29 H 0.06 -0.33 7.65 -2.39 -0.02 -0.35 16 30 H 0.06 -0.31 7.67 -2.39 -0.02 -0.32 16 31 H 0.09 0.03 6.33 -2.39 -0.02 0.01 16 32 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.42 -3.23 8.70 -92.71 -0.81 -4.03 16 34 H 0.13 -1.21 8.08 -2.39 -0.02 -1.23 16 35 H 0.13 -1.14 8.09 -2.39 -0.02 -1.16 16 36 H 0.14 -0.10 8.06 -2.91 -0.02 -0.12 16 37 H 0.14 0.18 4.88 -2.91 -0.01 0.16 16 38 H 0.10 -0.14 7.96 -2.39 -0.02 -0.16 16 39 H 0.39 -0.88 8.74 -74.05 -0.65 -1.53 16 40 H -0.31 -2.93 7.11 99.48 0.71 -2.23 16 41 H -0.28 -1.22 7.11 99.48 0.71 -0.52 16 42 H 0.12 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.13 0.20 8.06 -2.91 -0.02 0.17 16 44 H 0.08 -0.30 8.14 -2.38 -0.02 -0.32 16 45 H 0.10 -0.21 7.73 -2.38 -0.02 -0.22 16 46 H 0.14 -0.23 6.67 -2.91 -0.02 -0.25 16 47 H 0.14 -0.34 8.06 -2.91 -0.02 -0.37 16 48 H 0.14 -0.42 8.06 -2.91 -0.02 -0.45 16 49 H 0.14 -0.26 6.30 -2.91 -0.02 -0.28 16 Total: 0.00 -25.28 401.51 0.79 -24.50 By element: Atomic # 1 Polarization: -12.46 SS G_CDS: -0.43 Total: -12.89 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.31 Total: 2.33 kcal Atomic # 7 Polarization: 1.11 SS G_CDS: -2.32 Total: -1.21 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -2.82 Total: -15.62 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: 2.04 Total: 2.89 kcal Total: -25.28 0.79 -24.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12335836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.087 kcal (2) G-P(sol) polarization free energy of solvation -25.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds