Wall clock time and date at job start Sun Mar 7 2021 05:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00025 * 2 1 4 4 C 1.38705 * 120.05413 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.03162 * 359.95797 * 4 3 2 6 6 H 1.08997 * 112.84666 * 348.79778 * 5 4 3 7 7 C 1.53775 * 113.61451 * 120.00101 * 5 4 3 8 8 C 1.53777 * 87.08265 * 139.98219 * 7 5 4 9 9 H 1.09005 * 113.61680 * 220.01496 * 8 7 5 10 10 N 1.46501 * 113.61631 * 89.19723 * 8 7 5 11 11 C 1.34779 * 120.00076 * 155.00242 * 10 8 7 12 12 O 1.21593 * 120.00094 * 359.97438 * 11 10 8 13 13 C 1.47574 * 120.00381 * 180.02562 * 11 10 8 14 14 C 1.40202 * 119.82980 * 359.72247 * 13 11 10 15 15 C 1.36233 * 120.37967 * 179.75913 * 14 13 11 16 16 C 1.39881 * 119.96109 * 0.52049 * 15 14 13 17 17 C 1.46257 * 133.84709 * 179.74271 * 16 15 14 18 18 C 1.50702 * 126.48057 * 0.02562 * 17 16 15 19 19 O 1.42900 * 109.47454 * 74.99777 * 18 17 16 20 20 Si 1.86297 * 109.46854 * 195.00051 * 18 17 16 21 21 C 1.34451 * 107.03466 * 179.97438 * 17 16 15 22 22 N 1.36556 * 109.98673 * 359.97438 * 21 17 16 23 23 C 1.37828 * 109.86225 * 0.02562 * 22 21 17 24 24 C 1.38647 * 133.37939 * 180.02562 * 23 22 21 25 25 C 1.53780 * 87.08376 * 334.56533 * 8 7 5 26 26 C 1.38173 * 119.93997 * 179.72484 * 4 3 2 27 27 C 1.38241 * 120.05599 * 0.53472 * 26 4 3 28 28 C 1.38291 * 120.11180 * 359.44059 * 27 26 4 29 29 C 1.38122 * 120.05183 * 0.30261 * 28 27 26 30 30 H 1.08999 * 109.47144 * 59.99791 * 1 2 3 31 31 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47352 * 299.99766 * 1 2 3 33 33 H 1.09005 * 113.61252 * 254.52300 * 7 5 4 34 34 H 1.08996 * 113.61802 * 25.34797 * 7 5 4 35 35 H 0.96997 * 120.00034 * 335.00261 * 10 8 7 36 36 H 1.08002 * 119.81219 * 359.97438 * 14 13 11 37 37 H 1.07998 * 120.02364 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46845 * 314.99508 * 18 17 16 39 39 H 0.96701 * 113.99187 * 60.00084 * 19 18 17 40 40 H 1.48501 * 110.00119 * 58.68078 * 20 18 17 41 41 H 1.48498 * 109.99689 * 179.97438 * 20 18 17 42 42 H 1.08003 * 125.00382 * 180.02562 * 21 17 16 43 43 H 0.97002 * 125.07498 * 180.02562 * 22 21 17 44 44 H 1.07999 * 120.16999 * 0.02562 * 24 23 22 45 45 H 1.09000 * 113.61336 * 270.89167 * 25 8 7 46 46 H 1.08997 * 113.61960 * 139.97752 * 25 8 7 47 47 H 1.08001 * 119.97126 * 180.27071 * 26 4 3 48 48 H 1.08002 * 119.94762 * 179.72634 * 27 26 4 49 49 H 1.07998 * 119.97202 * 180.27812 * 28 27 26 50 50 H 1.08002 * 120.02342 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4311 1.2848 -0.0005 5 6 4.2537 0.0222 -0.0002 6 1 3.6593 -0.8702 0.1957 7 6 5.1798 -0.1100 -1.2206 8 6 6.2405 -0.6675 -0.2568 9 1 7.2495 -0.3110 -0.4643 10 7 6.1742 -2.1213 -0.0883 11 6 7.2734 -2.8075 0.2823 12 8 8.3202 -2.2201 0.4765 13 6 7.2069 -4.2720 0.4515 14 6 5.9969 -4.9452 0.2313 15 6 5.9240 -6.2975 0.3795 16 6 7.0582 -7.0203 0.7639 17 6 7.3204 -8.4376 1.0122 18 6 6.3274 -9.5656 0.8997 19 8 6.0887 -9.8543 -0.4793 20 14 7.0104 -11.0804 1.7421 21 6 8.6151 -8.5438 1.3588 22 7 9.2028 -7.3112 1.3520 23 6 8.2788 -6.3539 0.9924 24 6 8.3456 -4.9782 0.8331 25 6 5.5270 0.1167 0.8571 26 6 4.0559 2.5172 -0.0063 27 6 3.3019 3.6758 -0.0003 28 6 1.9208 3.6048 -0.0003 29 6 1.2914 2.3753 0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.8328 -0.8365 -1.9554 34 1 5.4531 0.8461 -1.6670 35 1 5.3393 -2.5899 -0.2436 36 1 5.1184 -4.3890 -0.0608 37 1 4.9900 -6.8107 0.2045 38 1 5.3918 -9.2750 1.3774 39 1 6.8795 -10.1205 -0.9680 40 1 7.2928 -10.7839 3.1696 41 1 6.0403 -12.1999 1.6387 42 1 9.1167 -9.4680 1.6053 43 1 10.1320 -7.1354 1.5680 44 1 9.2756 -4.4565 1.0042 45 1 5.8962 1.1350 0.9795 46 1 5.4601 -0.4266 1.7996 47 1 5.1344 2.5753 -0.0111 48 1 3.7922 4.6381 -0.0004 49 1 1.3339 4.5114 -0.0002 50 1 0.2128 2.3204 0.0006 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15784314_12335838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:05:47 Heat of formation + Delta-G solvation = 15.057312 kcal Electronic energy + Delta-G solvation = -33174.036583 eV Core-core repulsion = 28713.494522 eV Total energy + Delta-G solvation = -4460.542061 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.162 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.46212 -41.69884 -40.77070 -39.39468 -38.08928 -37.78702 -37.38690 -34.52375 -33.22643 -31.96035 -31.04621 -30.68897 -30.39092 -28.24234 -26.66892 -26.59479 -26.22152 -24.63149 -23.59169 -23.09171 -22.52491 -21.48442 -20.80643 -20.06678 -19.43372 -19.05277 -18.29903 -17.58906 -17.38915 -17.00830 -16.93612 -16.68691 -16.60887 -16.20182 -15.87886 -15.77113 -15.55845 -15.37565 -15.19916 -15.04535 -14.97023 -14.70037 -14.66679 -14.36950 -14.19733 -14.00038 -13.98551 -13.47514 -13.15921 -13.08416 -13.03440 -12.79024 -12.57883 -12.29620 -12.29135 -12.21018 -12.06322 -11.90084 -11.70427 -11.62957 -11.11335 -10.85943 -10.72467 -10.34183 -10.00503 -9.73004 -9.32360 -9.03789 -8.78682 -5.09578 -0.22843 0.37540 0.42924 0.52845 1.29609 1.39237 1.62826 1.90243 1.97829 2.05383 2.26091 2.33487 2.79219 2.97048 3.50199 3.56218 3.60936 3.68722 3.73450 3.78219 3.80517 3.89377 3.90401 4.00996 4.08367 4.14158 4.17367 4.20836 4.23039 4.34296 4.44013 4.44876 4.47190 4.51695 4.55975 4.58471 4.68689 4.72745 4.76138 4.77650 4.90361 4.97631 5.01522 5.06326 5.10486 5.20882 5.28122 5.42720 5.46875 5.48062 5.54776 5.62611 5.63549 5.71667 5.84986 6.01528 6.38429 6.44596 6.56298 6.66244 7.30064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.130 3.870 4 C -0.102 4.102 5 C -0.064 4.064 6 H 0.102 0.898 7 C -0.136 4.136 8 C 0.120 3.880 9 H 0.106 0.894 10 N -0.708 5.708 11 C 0.566 3.434 12 O -0.537 6.537 13 C -0.121 4.121 14 C -0.113 4.113 15 C -0.073 4.073 16 C -0.063 4.063 17 C -0.211 4.211 18 C -0.030 4.030 19 O -0.542 6.542 20 Si 0.685 3.315 21 C 0.077 3.923 22 N -0.584 5.584 23 C 0.081 3.919 24 C -0.056 4.056 25 C -0.145 4.145 26 C -0.080 4.080 27 C -0.154 4.154 28 C -0.084 4.084 29 C -0.207 4.207 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.402 0.598 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.377 0.623 40 H -0.256 1.256 41 H -0.255 1.255 42 H 0.179 0.821 43 H 0.422 0.578 44 H 0.136 0.864 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.124 0.876 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 -1.965 -0.818 2.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.103 4.103 5 C -0.082 4.082 6 H 0.120 0.880 7 C -0.174 4.174 8 C 0.015 3.985 9 H 0.124 0.876 10 N -0.359 5.359 11 C 0.355 3.645 12 O -0.415 6.415 13 C -0.125 4.125 14 C -0.133 4.133 15 C -0.091 4.091 16 C -0.068 4.068 17 C -0.219 4.219 18 C -0.141 4.141 19 O -0.347 6.347 20 Si 0.586 3.414 21 C -0.052 4.052 22 N -0.186 5.186 23 C -0.025 4.025 24 C -0.077 4.077 25 C -0.183 4.183 26 C -0.098 4.098 27 C -0.172 4.172 28 C -0.102 4.102 29 C -0.226 4.226 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.238 0.762 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.224 0.776 40 H -0.181 1.181 41 H -0.179 1.179 42 H 0.195 0.805 43 H 0.260 0.740 44 H 0.154 0.846 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.142 0.858 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.048 -2.172 0.164 2.179 hybrid contribution -0.765 0.657 0.140 1.018 sum -0.813 -1.515 0.304 1.746 Atomic orbital electron populations 1.23079 0.78236 1.04128 1.01405 1.86049 1.21395 1.26793 1.88624 1.18862 0.91817 0.84267 0.96606 1.19041 0.90111 0.95369 1.05776 1.21410 0.94008 0.95851 0.96943 0.87986 1.23437 0.95310 1.02216 0.96415 1.21841 1.00467 0.79660 0.96533 0.87584 1.45562 1.12925 1.07352 1.70100 1.18144 0.83415 0.86769 0.76216 1.90790 1.29620 1.70606 1.50464 1.19414 0.94345 0.92477 1.06280 1.20695 0.96535 0.94460 1.01582 1.20200 0.97453 0.93098 0.98388 1.19174 0.92961 0.92534 1.02171 1.20728 0.94809 0.93729 1.12637 1.24331 1.00044 1.01322 0.88423 1.86507 1.37524 1.90034 1.20626 0.95281 0.87613 0.77562 0.80930 1.21740 0.93235 0.88588 1.01622 1.41715 1.11985 1.05221 1.59698 1.18073 0.89733 0.90548 1.04153 1.20074 0.98994 0.89772 0.98896 1.23590 0.95196 1.01313 0.98218 1.20884 1.00063 0.91008 0.97847 1.21081 0.93932 0.98509 1.03708 1.20973 0.94788 0.97030 0.97402 1.21261 1.00106 0.92436 1.08780 0.92595 0.88090 0.92622 0.90524 0.88385 0.76196 0.85653 0.85233 0.87154 0.77586 1.18100 1.17907 0.80453 0.74006 0.84595 0.88686 0.90741 0.85206 0.85771 0.85787 0.85490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.32 -0.53 9.43 -19.44 -0.18 -0.71 16 3 C 0.13 0.27 6.66 -39.22 -0.26 0.01 16 4 C -0.10 -0.15 5.30 -104.47 -0.55 -0.71 16 5 C -0.06 -0.02 3.75 -90.96 -0.34 -0.36 16 6 H 0.10 0.07 7.32 -51.93 -0.38 -0.31 16 7 C -0.14 0.07 7.29 -25.92 -0.19 -0.12 16 8 C 0.12 0.08 4.32 -67.12 -0.29 -0.21 16 9 H 0.11 0.21 7.46 -51.93 -0.39 -0.18 16 10 N -0.71 -0.60 5.21 -54.04 -0.28 -0.89 16 11 C 0.57 1.98 7.76 -12.45 -0.10 1.88 16 12 O -0.54 -3.70 15.91 5.28 0.08 -3.61 16 13 C -0.12 -0.29 5.87 -104.95 -0.62 -0.91 16 14 C -0.11 -0.10 9.46 -39.57 -0.37 -0.47 16 15 C -0.07 -0.11 10.03 -39.69 -0.40 -0.50 16 16 C -0.06 -0.13 6.35 -105.04 -0.67 -0.79 16 17 C -0.21 -0.03 5.57 -102.74 -0.57 -0.60 16 18 C -0.03 0.01 3.06 36.01 0.11 0.12 16 19 O -0.54 -0.11 12.88 -35.23 -0.45 -0.57 16 20 Si 0.68 -1.29 30.75 -169.99 -5.23 -6.52 16 21 C 0.08 -0.15 10.43 -16.79 -0.18 -0.32 16 22 N -0.58 0.73 6.07 -10.68 -0.06 0.67 16 23 C 0.08 0.13 7.26 -84.00 -0.61 -0.48 16 24 C -0.06 -0.13 9.61 -39.03 -0.37 -0.51 16 25 C -0.14 -0.05 7.26 -25.91 -0.19 -0.24 16 26 C -0.08 -0.06 8.60 -39.60 -0.34 -0.40 16 27 C -0.15 -0.10 10.04 -39.56 -0.40 -0.50 16 28 C -0.08 -0.07 10.04 -39.60 -0.40 -0.46 16 29 C -0.21 -0.25 9.04 -39.43 -0.36 -0.61 16 30 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 31 H 0.10 -0.30 8.14 -51.93 -0.42 -0.72 16 32 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 33 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 34 H 0.10 -0.09 7.71 -51.93 -0.40 -0.49 16 35 H 0.40 -0.50 6.69 -40.82 -0.27 -0.78 16 36 H 0.13 -0.21 6.36 -52.49 -0.33 -0.55 16 37 H 0.13 0.05 8.06 -52.49 -0.42 -0.37 16 38 H 0.11 0.04 7.96 -51.93 -0.41 -0.37 16 39 H 0.38 -1.39 8.70 45.56 0.40 -0.99 16 40 H -0.26 -0.17 7.11 56.52 0.40 0.23 16 41 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 42 H 0.18 -1.01 6.35 -52.48 -0.33 -1.34 16 43 H 0.42 -1.69 8.96 -40.82 -0.37 -2.06 16 44 H 0.14 0.29 7.62 -52.49 -0.40 -0.11 16 45 H 0.09 -0.03 6.32 -51.93 -0.33 -0.36 16 46 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 47 H 0.13 -0.13 6.67 -52.49 -0.35 -0.48 16 48 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 49 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 50 H 0.13 -0.06 6.30 -52.49 -0.33 -0.39 16 LS Contribution 410.35 15.07 6.18 6.18 Total: 0.00 -10.42 410.35 -12.47 -22.89 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -6.43 Total: -12.22 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -6.10 Total: -5.24 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.35 Total: -0.22 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.55 Total: -4.89 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.23 Total: -6.52 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -10.42 -12.47 -22.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15784314_12335838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.948 kcal (2) G-P(sol) polarization free energy of solvation -10.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds